CVGAE: A Self-Supervised Generative Method for Gene Regulatory Network Inference Using Single-Cell RNA Sequencing Data Wei LiuZhijie TengJing Chen Original research article 23 May 2024
Adap-BDCM: Adaptive Bilinear Dynamic Cascade Model for Classification Tasks on CNV Datasets Liancheng JiangLiye JiaJunhong Yue Original research article 17 May 2024
A Computational Predictor for Accurate Identification of Tumor Homing Peptides by Integrating Sequential and Deep BiLSTM Features Roha ArifSameera KanwalMuhammad Kabir Original research article 11 May 2024
GEnDDn: An lncRNA–Disease Association Identification Framework Based on Dual-Net Neural Architecture and Deep Neural Network Lihong PengMengnan RenMin Chen Original research article 11 May 2024
A Multi-view Molecular Pre-training with Generative Contrastive Learning Yunwu LiuRuisheng ZhangZhixuan Yu Original research article 06 May 2024
Multi-kernel Learning Fusion Algorithm Based on RNN and GRU for ASD Diagnosis and Pathogenic Brain Region Extraction Jie ChenHuilian ZhangXia-an Bi Original research article 29 April 2024
Exploring Novel Fentanyl Analogues Using a Graph-Based Transformer Model Guangle ZhangYuan ZhangCong Pian Original research article 29 April 2024
H-ACO with Consecutive Bases Pairing Constraint for Designing DNA Sequences Xuwei YangDonglin ZhuChangjun Zhou Original research article 29 April 2024
Identifying Diffuse Glioma Subtypes Based on Pathway Enrichment Evaluation Qiushi FengZehua DongXiaosheng Wang Original research article 18 April 2024
AMPFLDAP: Adaptive Message Passing and Feature Fusion on Heterogeneous Network for LncRNA-Disease Associations Prediction Yansen SuJingjing LiuChunhou Zheng Original research article 06 April 2024
MF-MNER: Multi-models Fusion for MNER in Chinese Clinical Electronic Medical Records Haoze DuJiahao XuXianfang Wang Original research article Open access 05 April 2024
Deep Canonical Correlation Fusion Algorithm Based on Denoising Autoencoder for ASD Diagnosis and Pathogenic Brain Region Identification Huilian ZhangJie ChenXia-an Bi Original research article 04 April 2024
DeepPI: Alignment-Free Analysis of Flexible Length Proteins Based on Deep Learning and Image Generator Mingeun JiYejin KanGangman Yi Original research article 03 April 2024
BDM: An Assessment Metric for Protein Complex Structure Models Based on Distance Difference Matrix Jiaqi ZhaiWenda WangXinqi Gong Original research article 27 March 2024
DOTAD: A Database of Therapeutic Antibody Developability Wenzhen LiHongyan LinJian Huang Original research article 26 March 2024
ResDeepSurv: A Survival Model for Deep Neural Networks Based on Residual Blocks and Self-attention Mechanism Yuchen WangXianchun KongHao Wu Original research article 15 March 2024
CHL-DTI: A Novel High–Low Order Information Convergence Framework for Effective Drug–Target Interaction Prediction Shudong WangYingye LiuShanchen Pang Original research article 14 March 2024
SeFilter-DIA: Squeeze-and-Excitation Network for Filtering High-Confidence Peptides of Data-Independent Acquisition Proteomics Qingzu HeHuan GuoJianwei Shuai Original research article 12 March 2024
Identifying Protein Phosphorylation Site-Disease Associations Based on Multi-Similarity Fusion and Negative Sample Selection by Convolutional Neural Network Qian DengJing ZhangZhanchao Li Original research article 08 March 2024
GraphsformerCPI: Graph Transformer for Compound–Protein Interaction Prediction Jun MaZhili ZhaoRuisheng Zhang Original research article 08 March 2024
Predicting Microbe-Disease Associations Based on a Linear Neighborhood Label Propagation Method with Multi-order Similarity Fusion Learning Ruibin ChenGuobo XieZhenguo Liu Original research article 04 March 2024
Singular Value Decomposition-Driven Non-negative Matrix Factorization with Application to Identify the Association Patterns of Sarcoma Recurrence Jin DengKaijun LiWei Luo Original research article 01 March 2024
Machine Learning Accelerates De Novo Design of Antimicrobial Peptides Kedong YinWen XuRuifang Li Original research article 28 February 2024
Transformative Deep Neural Network Approaches in Kidney Ultrasound Segmentation: Empirical Validation with an Annotated Dataset Rashid KhanChuda XiaoBingding Huang Original research article 27 February 2024
Predicting circRNA-RBP Binding Sites Using a Hybrid Deep Neural Network Liwei LiuYixin WeiQi Zhao Original research article 21 February 2024
A Review of the Application of Spatial Transcriptomics in Neuroscience Le ZhangZhenqi XiongMing Xiao Review 20 February 2024
scEM: A New Ensemble Framework for Predicting Cell Type Composition Based on scRNA-Seq Data Xianxian CaiWei ZhangYuanyuan Li Original research article 18 February 2024
Inference of Gene Regulatory Networks Based on Multi-view Hierarchical Hypergraphs Songyang WuKui JinWei Gao Original research article 11 February 2024
A Combined Manual Annotation and Deep-Learning Natural Language Processing Study on Accurate Entity Extraction in Hereditary Disease Related Biomedical Literature Dao-Ling HuangQuanlei ZengYuying Yuan Original research article Open access 10 February 2024
Synchronous Mutual Learning Network and Asynchronous Multi-Scale Embedding Network for miRNA-Disease Association Prediction Weicheng SunPing ZhangLi Li Original research article 04 February 2024
PDDGCN: A Parasitic Disease–Drug Association Predictor Based on Multi-view Fusion Graph Convolutional Network Xiaosong WangGuojun ChenZhenyu Yue Original research article 31 January 2024 Pages: 231 - 242
Predicting miRNA–Disease Associations by Combining Graph and Hypergraph Convolutional Network Xujun LiangMing GuoYongheng Chen Original research article 29 January 2024
PPSNO: A Feature-Rich SNO Sites Predictor by Stacking Ensemble Strategy from Protein Sequence-Derived Information Lun ZhuLiuyang WangSen Yang Original research article 11 January 2024 Pages: 192 - 217
LPI-SKMSC: Predicting LncRNA–Protein Interactions with Segmented k-mer Frequencies and Multi-space Clustering Dian-Zheng SunZhan-Li SunShuang-Hao Yong Original research article 11 January 2024
Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm Minghua HouSirong JinGuijun Zhang Original research article 08 January 2024
A Deep Neural Network for Predicting Synergistic Drug Combinations on Cancer Shiyu YanDing Zheng Original research article 06 January 2024 Pages: 218 - 230
Drug Repositioning Based on Deep Sparse Autoencoder and Drug–Disease Similarity Song LeiXiujuan LeiYi Pan Original research article 16 December 2023 Pages: 160 - 175
Hessian Regularized \(L_{2,1}\)-Nonnegative Matrix Factorization and Deep Learning for miRNA–Disease Associations Prediction Guo-Sheng HanQi GaoJing Tang Original research article 15 December 2023 Pages: 176 - 191
The Dynamical Biomarkers in Functional Connectivity of Autism Spectrum Disorder Based on Dynamic Graph Embedding Yanting LiuHao WangYanrui Ding Original research article 07 December 2023 Pages: 141 - 159
Comprehensive scRNA-seq Model Reveals Artery Endothelial Cell Heterogeneity and Metabolic Preference in Human Vascular Disease Liping ZengYunchang LiuChunyu Zeng Original research article 17 November 2023 Pages: 104 - 122
DCDA: CircRNA–Disease Association Prediction with Feed-Forward Neural Network and Deep Autoencoder Hacer TurgutBeste TuranliBetül Boz Original research article 17 November 2023 Pages: 91 - 103
Cervical Cancer Classification From Pap Smear Images Using Deep Convolutional Neural Network Models Sher Lyn TanGaneshsree SelvachandranKetan Kotecha Original research article Open access 14 November 2023 Pages: 16 - 38
Computer-Aided Diagnosis of Complications After Liver Transplantation Based on Transfer Learning Ying ZhangChenyuan ShangguanNa Chen Original research article 25 October 2023 Pages: 123 - 140
A Multi-perspective Model for Protein–Ligand-Binding Affinity Prediction Xianfeng ZhangYafei LiYanhui Gu Original research article 10 October 2023 Pages: 696 - 709
Combining Global-Constrained Concept Factorization and a Regularized Gaussian Graphical Model for Clustering Single-Cell RNA-seq Data Yaxin XuWei ZhangXianxian Cai Original research article 10 October 2023 Pages: 1 - 15
Tumour Growth Mechanisms Determine Effectiveness of Adaptive Therapy in Glandular Tumours Rui Zhen Tan Original research article 30 September 2023 Pages: 73 - 90
A Novel Deep Learning Model for Medical Image Segmentation with Convolutional Neural Network and Transformer Zhuo ZhangHongbing WuBaoshan Sun Original research article 04 September 2023 Pages: 663 - 677
CA-UNet Segmentation Makes a Good Ischemic Stroke Risk Prediction Yuqi ZhangMengbo YuJintao Han Original research article 26 August 2023 Pages: 58 - 72
Identification of gene-level methylation for disease prediction Jisha AugustineA. S. Jereesh Original research article 21 August 2023 Pages: 678 - 695
Classification of Glomerular Pathology Images in Children Using Convolutional Neural Networks with Improved SE-ResNet Module Xiang-Yong KongXin-Shen ZhaoYing-Rui Lv Original research article 31 July 2023 Pages: 602 - 615
