Abstract
Alkaliphiles are interesting groups of extremophilic organisms that thrive at pH of 9.0 and above. Many of their products, in particular enzymes, have found widespread applications in industry, primarily in the detergent and laundry industries. While the enzymes have been a runaway success from the industrial point of view, many more products have been reported from alkaliphiles such as antibiotics and carotenoids. Less known are their potential for degradation of xenobiotics. They also play a key role in biogeocycling of important inorganic compounds. This review provides an insight into the huge diversity of alkaliphilic bacteria, the varied products obtained from them, and the need for further investigations on these interesting bacteria.
Similar content being viewed by others
References
Agrawal PB, Nierstrasz VA, Klug-Santner BG, Gübitz GM, Lenting HB, Warmoeskerken MM (2007) Wax removal for accelerated cotton scouring with alkaline pectinase. Biotechnol J 2(3):306–315
Ahlawat S, Mandhan RP, Dhiman SS, Kumar R, Sharma J (2008) Potential application of alkaline pectinase from Bacillus subtilis SS in pulp and paper industry. Appl Biochem Biotechnol 149(3):287–293
Ahmad A, Senapati S, Khan MI, Kumar R, Sastry M (2003) Extracellular biosynthesis of monodisperse gold nanoparticles by a novel extremophilic actinomycete, Thermomonospora sp. Langmuir 19:3550–3553
Ahmad A, Senapati S, Khan MI, Ramani R, Srinivas V, Sastry M (2003) Intracellular synthesis of gold nanoparticles by a novel alkalitolerant actinomycete, Rhodococcus species. Nanotechnology 14:824–828
Ahmed EH, Raghavendra T, Madamwar D (2010) An alkaline lipase from organic solvent tolerant Acinetobacter sp. EH28: application for ethyl caprylate synthesis. Bioresour Technol 101(10):3628–3634
Aizawa T, Urai M, Iwabuchi N, Nakajima M, Sunairi M (2010) Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (Trypoxylus dichotomus septentrionalis). Int J Syst Evol Microbiol 60:61–66
Allgood GS, Perry JJ (1986) Characterization of a manganese-containing catalase from the obligate thermophile Thermoleophilum album. J Bacteriol 168(2):563–567
Aloulou A, Rodriguez JA, Puccinelli D, Mouz N, Leclaire J, Leblond Y, Carrière F (2007) Purification and biochemical characterization of the LIP2 lipase from Yarrowia lipolytica. Biochim Biophys Acta 1771:228–237
Amorim AM, Gasques MD, Andreaus J, Scharf M (2002) The application of catalase for the elimination of hydrogen peroxide residues after bleaching of cotton fabrics. An Acad Bras Cienc 74(3):433–436
Anish R, Rahman MS, Rao M (2007) Application of cellulases from an alkalothermophilic Thermomonospora sp. in biopolishing of denims. Biotechnol Bioeng 96(1):48–56
Anwar A, Saleemuddin M (1998) Alkaline proteases: a review. Bioresour Technol 64:175–183
Aono R, Horikoshi K (1991) Carotenes produced by alkaliphilic yellow pigmented strains of Bacillus. Agric Biol Chem 55:2643–2645
Ara K, Igarashi K, Saeki K, Kawai S, Ito S (1992) Purification and some properties of an alkaline pullulanase from alkaliphilic Bacillus sp. KSM-1876. Biosci Biotechnol Biochem 56:62–65
Ara K, Saeki K, Igarashi K, Takaiwa M, Uemura T, Hagihara H, Kawai S, Ito S (1995) Purification and characterization of an alkaline amylopullulanase with both α-1, 4 and α-1, 6 hydrolytic activity from alkalophilic Bacillus sp. KSM-1378. Biochim Biophys Acta 1243(3):315–324
Arikan B (2008) Highly thermostable, thermophilic, alkaline, SDS and chelator resistant amylase from a thermophilic Bacillus sp. isolate A3–15. Bioresour Technol 99(8):3071–3076
Arvidson SO (1983) Extracellular enzymes from Staphylococcus aureus. In: Easmon CSF, Adlam C (eds) Staphylococci and staphylococcal infections. Academic Press, London, pp 745–808
Atanasova N, Kitayska T, Yankov D, Safarikova M, Tonkova A (2009) Cyclodextrin glucanotransferase production by cell biocatalysts of alkaliphilic bacilli. Biochem Eng J 46(3):278–285
Atanasova N, Petrova P, Ivanova V, Yankov D, Vassileva A, Tonkova A (2008) Isolation of novel alkaliphilic Bacillus strains for cyclodextrin glucanotransferase production. Appl Biochem Biotechnol 149:155–167
Azeri C, Tamer AU, Oskay M (2010) Thermoactive cellulase-free xylanase production from alkaliphilic Bacillus strains using various agro-residues and their potential in biobleaching of kraft pulp. Afr J Biotechnol 9(1):63–72
Bai Y, Wang J, Zhang Z, Yang P, Shi P, Luo H, Meng K, Huang H, Yao B (2010) A new xylanase from thermoacidophilic Alicyclobacillus sp. A4 with broad-range pH activity and pH stability. J Ind Microbiol Biotechnol 37(2):187–194
Bajpai P, Bajpai PK (1998) Deinking with enzymes: a review. Tappi J 81(12):111–117
Ballschmiter M, Armbrecht M, Ivanova K, Antranikian G, Liebl W (2005) AmyA, an α-amylase with β-cyclodextrin-forming activity, and AmyB from the thermoalkaliphilic organism Anaerobranca gottschalkii: two α-amylases adapted to their different cellular localizations. Appl Environ Microbiol 71(7):3709–3715
Banciu H, Sorokin DY, Galinski EA, Muyzer G, Kleerebezem R, Kuenen JG (2004) Thialkalivibrio halophilus sp. nov., a novel obligately chemolithoautotrophic, facultatively alkaliphilic, and extremely salt-tolerant, sulfur-oxidizing bacterium from a hypersaline alkaline lake. Extremophiles 8(4):325–334
Bansode VB, Bajekal SS (2006) Characterization of chitinases from microorganisms isolated from Lonar Lake. Indian J Biotechnol 5:357–363
Baudin C, Pean C, Perly B, Goselin P (2000) Inclusion of organic pollutants in cyclodextrin and derivatives. Int J Environ Anal Chem 77:233–242
Beg K, Kapoor M, Mahajan L, Hoondal GS (2001) Microbial xylanases and their industrial applications: a review. Appl Microbiol Biotechnol 56:326–338
Bhat MK, Bhat S (1997) Cellulose degrading enzymes and their potential industrial applications. Biotechnol Adv 15(3–4):583–620
Bhat MK (2000) Cellulases and related enzymes in biotechnology. Biotechnol Adv 18:355–383
Bhushan B, Hoondal GS (1998) Isolation, purification and properties of a thermostable chitinase from an alkalophilic Bacillus sp. BG-11. Biotechnol Lett 20:157–159
Blum JS, Bindi AB, Buzzelli J, Stolz JF, Oremland RS (1998) Bacillus arsenicoselenatis, sp nov, and Bacillus selenitireducens, sp nov: two haloalkaliphiles from Mono Lake, California that respire oxyanions of selenium and arsenic. Arch Microbiol 171(5):19–30
Boldareva EN, Akimov VN, Boĭchenko VA, Stadnichuk IN, Moskalenko AA, Makhneva ZK, Gorlenko VM (2008) Rhodobaca barguzinensis sp. nov., a new alkaliphilic purple nonsulfur bacterium isolated from a soda lake of the Barguzin Valley (Buryat Republic, Eastern Siberia). Mikrobiologiia 77(2):241–254
Bonilha PRM, Menocci V, Goulart AJ, Polizeli MLTM, Monti R (2006) Cyclodextrin glycosyltransferase from Bacillus licheniformis: optimization of production and its properties. Braz J Microbiol 37(3):317–323
Bornscheuer UT, Kazlauskas RJ (2006) Hydrolases in organic synthesis— regio- and stereoselective biotransformations, 2nd edn. Wiley-VCH, Weinheim
Boyer EW, Ingle MB (1972) Extracellular alkaline amylase from a Bacillus species. J Bacteriol 110:992–1000
Brandelli A, Daroit DJ, Riffel A (2010) Biochemical features of microbial keratinases and their production and applications. Appl Microbiol Biotechnol 85:1735–1750
Brandelli A (2008) Bacterial keratinases: useful enzymes for bioprocessing agroindustrial wastes and beyond. Food Bioprocess Technol 1:105–116
Brioukhanov AL, Netrusov AI, Eggen RI (2006) The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri. Microbiology 152:1671–1677
Budzikiewicz H (2001) Siderophore-antibiotic conjugates used as Trojan horses against Pseudomonas aeruginosa. Curr Top Med Chem 1(1):73–82
Burhan A, Nisa U, Gökhan C, Ömer C, Ashabil A, Osman G (2003) Enzymatic properties of a novel thermostable, thermophilic, alkaline and chelator resistant amylase from an alkaliphilic Bacillus sp. isolate ANT–6. Process Biochem 38:1397–1403
Burkert JFM, Maugeri F, Rodrigues MI (2004) Optimization of extracellular lipase production by Geotrichum sp. using factorial design. Bioresour Technol 91:77–84
Buschmann HJ, Schollmeyer E (2002) Applications of cyclodextrins in cosmetic products: a review. J Cosmet Sci 53:185–191
Cao J, Zheng L, Chen S (1992) Screening of pectinase producer from alkalophilic bacteria and study on its potential application in degumming of ramie. Enzyme Microb Technol 14:1013–1016
Cao X, Jin Z, Wang X, Chen F (2005) A novel cyclodextrin glycosyltransferase from an alkalophilic Bacillus species: purification and characterization. Food Res Int 38(3):309–314
Charoensakdi R, Murakami S, Aoki K, Rimphanitchayakit V, Limpaseni T (2007) Cloning and expression of cyclodextrin glycosyltransferase gene from Paenibacillus sp. T16 isolated from hot spring soil in northern Thailand. J Biochem Mol Biol 40(3):333–340
Chelikani P, Fita I, Loewen PC (2004) Diversity of structures and properties among catalases. Cell Mol Life Sci 61:192–208
Chelikani P, Ramana T, Radhakrishnan TM (2005) Catalase: a repertoire of unusual features. Ind J Clin Biochem 20(2):131–135
Chincholkar SB, Chaudhari BL, Rane MR (2004) Microbial siderophore: a state of art. In: Varma A, Chincholkar SB (eds) Soil biology, microbial siderophores, vol 12. Springer, Berlin Heidelberg New York, pp 233–242. doi:10.1007/978-3-540-71160-5_12
Collins T, Gerday C, Feller G (2005) Xylanases, xylanase families and extremophilic xylanases. FEMS Microbiol Rev 29:3–23
Couto GH, Glogauer A, Faoro H, Chubatsu LS, Souza EM, Pedrosa FO (2010) Isolation of a novel lipase from a metagenomic library derived from mangrove sediment from the south Brazilian coast. Genet Mol Res 9(1):514–523
d’Hugues D, Norris PR, Hallberg KB, Sánchez F, Langwaldt J, Grotowski A, Chmielewski T, Groudev S (2008) Bioshale consortium. Bioshale FP6 European project: exploiting black shale ores using biotechnologies? Miner Eng 21(1):111–120
Dandavate V, Jinjala J, Keharia H, Madamwar D (2009) Production, partial purification and characterization of organic solvent tolerant lipase from Burkholderia multivorans V2 and its application for ester synthesis. Bioresour Technol 100(13):3374–3381
Dart J (1996) Contact lens and prosthesis infections. In: Tasman W, Jaeger EA (eds) Duane’s foundations of clinical ophthalmology. Lippincott-Raven, New York
Dastager GS, Agasar D, Pandey A (2009) Production and partial purification of α-amylase from a novel isolate Streptomyces gulbargensis. J Ind Microbiol Biotechnol 36:189–194
Davies DJG, Anthony Y, Meakin BJ, Kilvington S, Anger CB (1990) Evaluation of the anti-acanthamoebal activity of five contact lens disinfectants. ICLC 17:14–20
Davies GJ, Henrissat B (1995) Structures and mechanisms of glycosyl hydrolases. Structure 3:853–859
de Carvalho CCCR, Fernandes P (2010) Production of metabolites as bacterial responses to the marine environment. Mar Drugs 8(3):705–727
de Oliveira AN, de Oliveira LA, Andrade JS (2010) Partial characterization of amylases of two indigenous central Amazonian Rhizobia strains. Braz Arch Biol Techn 53(1):35–45
de Oliveira PL, Duarte MCT, Ponezi AN, Durrant LR (2009) Use of Bacillus pumilus CBMAI 0008 and Paenibacillus sp. CBMAI 868 for colour removal from paper mill effluent. Braz J Microbiol 40(2):354–357
Dheeman DS, Frias JM, Henehan GTM (2010) Influence of cultivation conditions on the production of a thermostable extracellular lipase from Amycolatopsis mediterranei DSM 43304. J Ind Microbiol Biot 37(1):1–17
Dietera A, Hamm A, Fiedler HP, Goodfellow M, Muller WE, Brun R, Bringmann G (2003) Pyrocoll, an antibiotic, antiparasitic and antitumor compound produced by a novel alkaliphilic Streptomyces strain. J Antibiot 56(7):639–646
Ding P, Schous CE, Marvin J (2008) Design and synthesis of a novel protected mixed ligand siderophore. Tetrahedron Lett 49(14):2306–2310
Ding ZG, Li MG, Zhao JY, Ren J, Huang R, Xie MJ, Cui XL, Zhu HJ, Wen ML (2010) Naphthospironone a: an unprecedented and highly functionalized polycyclic metabolite from an alkaline mine waste extremophile. Chemistry 16(13):3902–3905
D’Onofrio A, Crawford JM, Stewart EJ, Witt K, Gavrish E, Epstein S, Clardy J, Lewis K (2010) Siderophores from neighboring organisms promote the growth of uncultured bacteria. Chem Biol 17(3):254–264
Dutta S, Ray L (2009) Production and characterization of an alkaline thermostable crude lipase from an isolated strain of Bacillus cereus C7. Appl Biochem Biotechnol 159(1):142–154
Eva CMJ, Bernhardsdotter JD, Ng OK, Garriott ML, Pusey ML (2005) Enzymic properties of an alkaline chelator-resistant α-amylase from an alkaliphilic Bacillus sp. isolate L1711. Process Biochem 40:2401–2408
Fang Y, Lu Y, Lu F, Bie X, Zhao H, Wang Y, Lu Z (2009) Improvement of alkaline lipase from Proteus vulgaris T6 by directed evolution. Enzyme Microb Tech 44(2):84–88
Fogarty WM, Ward PO (1974) Pectinases and pectic polysaccharides. Prog Ind Microbiol 13:61–119
Fujita Y, Tsubouchi H, Inagi Y, Tomita K, Ozaki A, Nakamura K (1990) Purification and properties of cyclodextrin glycosyltransferase from Bacillus sp. AL-6. J Ferment Bioeng 70:150–154
Fukumori F, Kudo T, Horikoshi K (1985) Purification and properties of a cellulase from alkalophilic Bacillus sp. no. 1139. J Gen Microbiol 131:3339–3345
Gademann K (2007) Cyanobacterial natural products for the inhibition of biofilm formation and biofouling. Chimia 61:373–377
Gascoyne DJ, Connor JA, Bull AT (1991) Isolation of bacteria producing siderophores under alkaline conditions. Appl Microbiol Biotechnol 36:130–135
Gascoyne DJ, Connor JA, Bull AT (1991) Capacity of siderophore-producing alkalophilic bacteria to accumulate iron, gallium and aluminum. Appl Microbiol Biotechnol 36:136–141
Gessesse A (1998) Purification and properties of two thermostable alkaline xylanases from an alkaliphilic Bacillus sp. Appl Environ Microbiol 64:3533–3535
Giridhara PV, Chandra TS (2010) Production of novel halo-alkali-thermo-stable xylanase by a newly isolated moderately halophilic and alkali-tolerant Gracilibacillus sp. TSCPVG. Process Biochem 45(10):1730–1737
Global Industrial Enzymes Market: An Analysis (2010) http://marketpublishers.com/report/industry/chemicals_petrochemicals/global_industrial_enzymes_market_an_analysis.html
Godinho A, Bhosle S (2008) Carotenes produced by alkaliphilic orange-pigmented strain of Microbacterium arborescens—AGSB isolated from coastal sand dunes. Indian J Mar Sci 37(3):207–312
Gorlenko V, Tsapin A, Namsaraev Z, Teal T, Tourova T, Engler D, Mielke R, Nealson K (2004) Anaerobranca californiensis sp nov., an anaerobic, alkalithermophilic, fermentative bacterium isolated from a hot spring on Mono Lake. Int J Syst Evol Microbiol 54:739–743
Grant WD, Tindall WJ (1986) The alkaline saline environment. In: Herbert TA, Codd GA (eds) Microbes in extreme environments. Academic Press, London, pp 25–54
Gudelj M, Fruhwirth GO, Paar A, Lottspeich F, Robra KH, Cavaco-Paulo A, Gübitz GM (2001) A catalase-peroxidase from a newly isolated thermoalkaliphilic Bacillus sp. with potential for the treatment of textile bleaching effluents. Extremophiles 5:423–429
Guo R, Ding M, Zhang SL, Xu GJ, Zhao FK (2008) Molecular cloning and characterization of two novel cellulase genes from the mollusk Ampullaria crossean. J Comp Physiol 178(2):209–215
Gupta R, Beg QK, Lorenz P (2002) Bacterial alkaline proteases: molecular approaches and industrial applications. Appl Microbiol Biotechnol 59:15–32
Gupta R, Gupta N, Rathi P (2004) Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol 64:763–781
Gupta R, Ramnani P (2006) Microbial keratinases and their prospective applications: an overview. Appl Microbiol Biotechnol 70:21–33
Hagihara H, Igarashi K, Hayashi Y, Endo K, Ikawa-Kitayama K, Ozaki K, Kawai S, Ito S (2001) Novel alpha-amylase that is highly resistant to chelating reagents and chemical oxidants from the alkaliphilic Bacillus isolate KSM-K38. Appl Environ Microbiol 67(4):1744–1750
Hakamada Y, Endo K, Takizawa S, Kobayashi T, Shirai T, Yamane T, Ito S (2002) Enzymatic properties, crystallization and deduced amino acid sequence of an alkaline endoglucanase from Bacillus circulans. Biochim Biophys Acta 1570:174–180
Hamana K, Niitsu M (1999) Production of 2-phenylethylamine by decarboxylation of l-phenylalanine in alkaliphilic Bacillus cohnii. J Gen Appl Microbiol 45(4):149–153
Hamasaki N, Shirai S, Niitsu M, Kakinuma K, Oshima T (1993) An alkalophilic Bacillus sp. produces 2-phenylethylamine. Appl Environ Microbiol 59:2720–2722
Hashim SO, Delgado OD, Martínez MA, Hatti-Kaul R, Mulaa FJ, Mattiasson B (2005) Alkaline active maltohexaose-forming α-amylase from Bacillus halodurans LBK 34. Enzyme Microb Technol 36(1):139–146
Hatada Y, Igarashi K, Ozaki K, Ara K, Hitomi J, Kobayashi T, Kawai S, Watabe T, Ito S (1996) Amino acid sequence and molecular structure of an alkaline amylopullulanase from Bacillus that hydrolyzes alpha-1, 4 and alpha-1, 6 linkages in polysaccharides at different active sites. J Biol Chem 271(39):24075–24083
Hatada Y, Saito K, Koike K, Yoshimatsu T, Ozawa T, Kobayashi T, Ito S (2000) Deduced amino-acid sequence and possible catalytic residues of a novel pectate lyase from an alkaliphilic strain of Bacillus. Eur J Biochem 267:2268–2275
Hicks DB (1995) Purification of three catalase isozymes from facultatively alkaliphilic Bacillus firmus OF4. Biochim Biophys Acta 1229(3):347–355
Hillenbrand T (1999) Die Abwassersituation in der deutschen Papier-, Textil- und Lederindustrie. Gwf Wasser Abwasser 140(4):267–273
Hirano K, Ishihara T, Ogasawara S, Maeda H, Abe K, Nakajima T, Yamagata Y (2006) Molecular cloning and characterization of a novel γ-CGTase from alkalophilic Bacillus sp. Appl Microbiol Biotechnol 70:193–201
Hirasawa K, Uchimura K, Kashiwa M, Grant WD, Ito S, Kobayashi T, Horikoshi K (2006) Salt-activated endoglucanase of a strain of alkaliphilic Bacillus agaradhaerens. Antonie Van Leeuwenhoek 89(2):211–219
Hirata Y, Ito H, Furuta T, Ikuta K, Sakudo A (2010) Degradation and destabilization of abnormal prion protein using alkaline detergents and proteases. Int J Mol Med 25(2):267–270
Holden B (1990) A report card on hydrogen peroxide for contact lens disinfection. CLAO J 16:S61–S64
Hoondal GS, Tiwari RP, Tewari R, Dahiya N, Beg QK (2002) Microbial alkaline pectinases and their industrial applications: a review. Appl Microbiol Biotechnol 59:409–418
Horchani H, Mosbah H, Salem NB, Gargouri Y, Sayari A (2009) Biochemical and molecular characterisation of a thermoactive, alkaline and detergent-stable lipase from a newly isolated Staphylococcus aureus strain. J Mol Catal B-Enzym 56(4):237–245
Horikoshi K, Atsukawa Y (1973) Xylanase produced by alkalophilic Bacillus no C-59-2. Agric Biol Chem 37:2097–2103
Horikoshi K, Nakao M, Kurono Y, Sashihara N (1984) Cellulases of an alkalophilic Bacillus strain isolated from soil. Can J Microbiol 30:774–779
Horikoshi K (1971) Production of alkaline enzymes by alkalophilic microorganisms. I. Alkaline protease produced by Bacillus no. 221. Agric Biol Chem 35:1407–1414
Horikoshi K (1971) Production of alkaline enzymes by alkalophilic microorganisms. II. Alkaline amylase produced by Bacillus No. A-40–2. Agric Biol Chem 35:1783–1791
Horikoshi K (1972) Production of alkaline enzymes by alkalophilic microorganisms. III. Alkaline pectinase of Bacillus no. P-4-N. Agric Biol Chem 36:285–293
Horikoshi K (1999) Alkaliphiles: some applications of their products for biotechnology. Microbiol Mol Biol Rev 63(4):735–750
Huertas MJ, Luque-Almagro VM, Martinez-Luque M, Blasco R, Moreno-Vivian C, Castillo F, Roldan MD (2006) Cyanide metabolism of Pseudomonas pseudoalcaligenes CECT5344: Role of siderophores. Biochem Soc Trans 34(1):152–155
Hughes R, Kilvington S (2001) Comparison of hydrogen peroxide contact lens disinfection systems and solutions against Acanthamoeba polyphaga. Antimicrob Agents Chemother 45(7):2038–2043
Ibrahim HM, Yusoff WMW, Hamid AA, Illias RM, Hassan O, Omar O (2005) Optimization of medium for the production of β-cyclodextrin glucanotransferase using central composite design (CCD). Process Biochem 40(2):753–758
Igarashi K, Hatada Y, Hagihara H, Saeki K, Takaiwa M, Uemura T (1998) Enzymatic properties of a novel liquefying α-amylase from an alkaliphilic Bacillus isolate and entire nucleotide and amino acid sequence. Appl Environ Microbiol 64:3282–3289
Industrial enzymes (2007) In: Aehle W (ed) Enzymes in industry: production and applications, 3rd edn. Wiley-VCH, Weinheim, pp 99–262
Ito S, Kobayashi T, Ara K, Ozaki K, Kawai S, Hatada Y (1998) Alkaline detergent enzymes from alkaliphiles: enzymatic properties, genetics, and structures. Extremophiles 2(3):185–190
Ito S, Shikata S, Ozaki K, Kawai S, Okamoto KI, Takei A, Ohta Y, Satoh T (1989) Alkaline cellulase for laundry detergents: production by Bacillus sp. KSM-635 and enzymatic properties. Agric Biol Chem 53:1275–1281
Ito S (1997) Alkaline cellulase from alkaliphilic Bacillus: enzymatic properties, genetics, and application to detergents. Extremophiles 1:61–66
Ito Y, Tomita T, Roy N, Nakano A, Sugawara-Tomita N, Watanabe S, Okai N, Abe N, Kamio Y (2003) Cloning, expression and cell surface localization of Paenibacillus sp. strain W-61 xylanase 5, a multidomain xylanase. Appl Environ Microbiol 69(12):6969–6978
Jackett PS, Aber VR, Lowrie DB (1978) Virulence and resistance to superoxide, low pH and hydrogen peroxide among strains of Mycobacterium tuberculosis. J Gen Microbiol 104:37–45
Jaeger KE, Dijkstra BW, Reetz MT (1999) Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 53:315–351
Jagtap S, Rao M (2005) Purification and properties of a low molecular weight 1, 4-beta-D-glucan glucohydrolase having one active site for carboxymethyl cellulose and xylan from an alkalothermophilic Thermomonospora sp. Biochem Biophys Res Commun 329(1):111–116
Jung SW, Kim TK, Lee KW, Lee YH (2007) Catalytic properties of β-cyclodextrin glucanotransferase from alkalophilic Bacillus sp. BL-12 and intermolecular transglycosylation of stevioside. Biotechnol Bioprocess Eng 12:207–212
Jyonouchi H, Sun S, Gross M (1995) Effect of carotenoids on in vitro immunoglobulin production by human peripheral blood mononuclear cells: Astaxanthin, a carotenoid without vitamin A activity, enhances in vitro immunoglobulin production in response to a T-dependent stimulant and antigen. Nutr Cancer 23:171–183
Kalantzi S, Mamma D, Christakopoulos P, Kekos D (2008) Effect of pectate lyase bioscouring on physical, chemical and low-stress mechanical properties of cotton fabrics. Bioresour Technol 99(17):8185–8192
Kanso S, Greene AC, Patel BKC (2002) Bacillus subterraneus sp. nov., an iron and manganese reducing bacterium from a deep subsurface Australian thermal aquifer. Int J Syst Evol Microbiol 52:869–874
Kapoor M, Beg QK, Bhushan B, Singh K, Dadhich KS, Hoondal GS (2001) Application of an alkaline and thermostable polygalacturonase from Bacillus sp. MG-cp-2 in degumming of ramie (Boehmeria nivea) and sunn hemp (Crotalaria juncea) bast fibres. Process Biochem 36(8–9):803–807
Karadzic I, Masui A, Zivkovic LI, Fujiwara N (2006) Purification and characterization of an alkaline lipase from Pseudomonas aeruginosa isolated from putrid mineral cutting oil as component of metalworking fluid. J Biosci Bioeng 102:82–89
Kashyap DR, Vohra PK, Chopra S, Tewari R (2001) Application of pectinase in the commercial sector: a review. Bioresour Technol 77:215–227
Katapodis P, Christakopoulou V, Kekos D, Christakopoulos P (2007) Optimization of xylanase production by Chaetomium thermophilium in wheat straws using response surface methodology. Biochem Eng J 35:136–141
Kazlauskas RJ, Bornscheuer U (1998) Biotransformations with lipases. In: Rehm HJ, Reeds G (eds) Biotechnology: Biotransformations I, Wiley-VCH Verlag GmbH, Weinheim, Germany, pp 37–192. doi:10.1002/9783527620906.ch3
Kelly CT, Fogarty WM (1978) Production and properties of polygalacturonate lyase by an alkalophilic microorganism, Bacillus sp. RK9. Can J Microbiol 24:1164–1172
Kim CH, Choi HI, Lee DS (1993) Pullulanases of alkaline and broad pH range from a newly isolated alkalophilic Bacillus sp. S-1 and a Micrococcus sp. Y-1. J Ind Microbiol 12:48–57
Kim CH, Choi HI, Lee DS (1993) Purification and biochemical properties of an alkaline pullulanase from alkalophilic Bacillus sp. S-1. Biosci Biotechnol Biochem 57:1632–1637
Kim EY, Oh KH, Lee MH, Kang CH, Oh TK, Yoon JH (2009) Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases. Appl Environ Microbiol 75(1):257–260
Kim KC, Seung-Soo Y, Oh Young A, Seong-Jun K (2003) Isolation and characteristics of Trichoderma harzianum FJ1 producing cellulases and xylanase. J Microbiol Biotechnol 13:1–8
Kim TU, Gu BG, Jeong JY, Byun SM, Shin YC (1996) Purification and characterization of a maltotetraose-forming alkaline α-amylase from an alkalophilic Bacillus strain GM8901. Appl Environ Microbiol 61:3105–3112
Kimura H, Okamura A, Kawaide H (1994) Oxidation of 3-, 7-, and 12-hydroxyl groups of cholic acid by an alkalophilic Bacillus sp. Biosci Biotechnol Biochem 58:1002–1006
Ko CH, Chen WL, Tsai CH, Jane WN, Liu CC, Tu J (2007) Paenibacillus campinasensis BL11: a wood material-utilizing bacterial strain isolated from black liquor. Bioresour Technol 98(14):2727–2733
Ko CH, Lin ZP, Tu J, Tsai CH, Liu CC, Chen HT, Wang TP (2010) Xylanase production by Paenibacillus campinasensis BL11 and its pretreatment of hardwood kraft pulp bleaching. Int Biodeterioration Biodegrad 64(1):13–19
Kobayashi T, Hatada Y, Higaki N, Lusterio DD, Ozawa T, Koike K, Kawai S, Ito S (1999) Enzymatic properties and deduced amino acid sequence of a high-alkaline pectate lyase from an alkaliphilic Bacillus isolate. Biochim Biophys Acta 2:145–154
Kobayashi T, Koike K, Yoshimatsu T, Higaki N, Suzumatsu A, Ozawa T, Hatada Y, Ito S (1999) Purification and properties of a low-molecular-weight, high-alkaline pectate lyase from an alkaliphilic strain of Bacillus. Biosci Biotechnol Biochem 63(1):65–72
Kozlowski R, Batog J, Konczewicz W, Mackiewicz-Talarczyk M, Muzyczek M, Sedelnik N, Tanska B (2006) Enzymes in bast fibrous plant processing. Biotechnol Lett 28:761–765
Krumov N, Perner-Nochta I, Oder S, Gotcheva V, Angelov A, Posten C (2009) Production of inorganic nanoparticles by microorganisms. Chem Eng Technol 32(7):1026–1035
Krzeslak J, Gerritse G, van Merkerk R, Cool RH, Quax WJ (2008) Lipase expression in Pseudomonas alcaligenes is under the control of a two-component regulatory system. Appl Environ Microb 74(5):1402–1411
Kuddus M, Ramteke PW (2009) Cold-active extracellular alkaline protease from an alkaliphilic Stenotrophomonas maltophilia: production of enzyme and its industrial applications. Can J Microbiol 55(11):1294–1301
Kumar BK, Balakrishnan H, Rele MV (2004) Compatibility of alkaline xylanases from an alkaliphilic Bacillus NCL (87-6-10) with commercial detergents and proteases. J Ind Microbiol Biotechnol 31(2):83–87
Kumar CG, Takagi H (1999) Microbial alkaline proteases: from a bioindustrial viewpoint. Biotechnol Adv 17:561–594
Kundu A, Chakraborty MR, Chatterjee NC (2008) Biocontrol of wood decay by Trichoderma spp.—retrospect and prospect. Asian J Exp Sci 22(3):373–384
Labrenz M, Druschel GK, Thomsen-Ebert T, Gilbert B, Welch SA, Kemner KM, Logan GA, Summons RE, De Stasio G, Bond PL, Lai B, Kelly SD, Banfield JF (2000) Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria. Science 290(5497):1744–1747
Lawton EM, Cotter PD, Hill C, Ross RP (2007) Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125. FEMS Microbiol Lett 267(1):64–71
LeCleir GR, Buchan A, Maurer J, Moran MA, Hollibaugh JT (2007) Comparison of chitinolytic enzymes from an alkaline, hypersaline lake and an estuary. Environ Microbiol 9(1):197–205
Lee CC, Kibblewhite-Accinelli RE, Wagschal K, Robertson GH, Wong DWS (2006) Cloning and characterization of a cold-active xylanase enzyme from an environmental DNA library. Extremophiles 10:295–300
Lee KW, Shin HD, Lee YH (2003) Catalytic function and affinity purification of site-directed mutant β-cyclodextrin glucanotransferase from alkalophilic Bacillus firmus var. alkalophilus. J Mol Catal B: Enzymatic 26(3–6):157–165
Lee PC, Schmidt-Dannert C (2002) Metabolic engineering towards biotechnological production of carotenoids in microorganisms. Appl Microbiol Biotechnol 60:1–11
Leveque E, Janecek S, Haye B, Belarbi A (2000) Thermophilic archaeal amylolytic enzymes: catalytic mechanism, substrate specificity and stability. Enzyme Microbiol Technol 26:3–14
Li C, Lewis MR, Gilbert AB, Noel MD, Scoville DH, Allman GW, Savage PB (1999) Antimicrobial activities of amine- and guanidine-functionalized cholic acid derivatives. Antimicrob Agents Chemother 43(6):1347–1349
Li XT, Jiang ZQ, Li LT, Yang QS, Feng WY, Fan JY, Kusakabe I (2005) Characterization of a cellulase-free, neutral xylanase from Thermomyces lanuginosus CBS 288.54 and its biobleaching effect on wheat straw pulp. Bioresour Technol 96:1370–1379
Li Z, Bai Z, Zhang B, Xie H, Hu Q, Hao C, Xue W, Zhang H (2005) Newly isolated Bacillus gibsonii S-2 capable of using sugar beet pulp for alkaline pectinase production. World J Microbiol Biotechnol 21:1483–1486
Lima VMG, Krieger N, Mitchell DA, Baratti JC, Filippis I, Fontana JD (2004) Evaluation of the potential for use in biocatalysis of a lipase from a wild strain of Bacillus megaterium. J Mol Catal B Enzym 31:53–61
Lin LL, Chyau CC, Hsu WH (1996) Production and properties of a raw starch-degrading amylase from the thermophilic and alkaliphilic Bacillus sp. TS-23. Biotechnol Appl Biochem 28:61–68
Lin LL, Tsau MR, Chu WS (1996) Purification and properties of a 140-kDa amylopullulanase from thermophilic and alkaliphilic Bacillus sp. strain TS-23. Biotechnol Appl Biochem 24:101–107
Liu SL, Chen WZ, Wang Y, Liu G, Yu SW, Xing M (2008) Purification and characterization of a novel neutral β-glucanase and an alkaline β-glucanase from an alkaliphilic Bacillus isolate. World J Microbiol Biotechnol 24:149–155
Lu Y, Lu F, Wang X, Bie X, Sun H, Wuyundalai LuZ (2009) Identification of bacteria producing a thermophilic lipase with positional non-specificity and characterization of the lipase. Ann Microbiol 59(3):565–571
Luque-Almagro VM, Huertas MJ, Martínez-Luque M, Moreno-Vivián C, Roldán MD, García-Gil LJ, Castillo F, Blasco R (2005) Bacterial degradation of cyanide and its metal complexes under alkaline conditions. Appl Environ Microbiol 71:940–947
Mahat MK, Illias RM, Rahman RA, Rashid NAA, Mahmood NAN, Hassan O, Aziz SA, Kamaruddin K (2004) Production of cyclodextrin glucanotransferase (CGTase) from alkalophilic Bacillus sp. TS1–1: media optimization using experimental design. Enzyme Microb Technol 35(5):467–473
Maki M, Leung KT, Qin W (2009) The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass. Int J Biol Sci 5(5):500–516
Mamo G, Gessesse A (1999) Purification and characterization of two raw-starch-digesting thermostable α-amylases from a thermophilic Bacillus. Enzyme Microb Technol 25:433–438
Martínez JL, Baquero F (2002) Interactions among strategies associated with bacterial infection: pathogenicity, epidemicity, and antibiotic resistance. Clin Microbiol Rev 15(4):647–679
Martins RF, Hatti-Kaul R (2002) A new cyclodextrin glycosyltransferase from an alkaliphilic Bacillus agaradhaerens isolate: purification and characterization. Enzyme Microb Technol 30:116–124
Matsuzawa M, Kawano M, Nakamura N, Horikoshi K (1975) An improved method for the production of Schardinger β-dextrin on an industrial scale by cyclodextrin glycosyltransferase of an alkalophilic Bacillus sp. Starch 27:410–413
Mawadza C, Hatti-Kaul R, Zvauya R, Mattiasson B (2000) Purification and characterization of cellulases produced by two Bacillus strains. J Biotechnol 83:177–187
Meilleur C, Hupé JF, Juteau P, Shareck F (2009) Isolation and characterization of a new alkali-thermostable lipase cloned from a metagenomic library. J Ind Microbiol Biot 36(6):853–861
Menocci V, Goulart AJ, Adalberto PR, Tavano OL, Parreira DM, Contiero J, Monti R (2008) Cyclodextrin glycosyltransferase production by new Bacillus sp. strains isolated from Brazilian soil. Braz J Microbiol 39(4):682–688
Merz U (2000) Business report: the global market for carotenoids. Business Communication Company, Norwalk, Conn
Milford AD, Achenbach LA, Jung DO, Madigan MT (2000) Rhodobaca bogoriensis gen. nov. and sp. nov., an alkaliphilic purple nonsulfur bacterium from African Rift Valley soda lakes. Arch Microbiol 174:18–27
Mishra M, Thakur IS (2010) Isolation and characterization of alkalotolerant bacteria and optimization of process parameters for decolorization and detoxification of pulp and paper mill effluent by Taguchi approach. Biodegradation. doi:10.1007/s10532-010-9356-x
Mitra S, Khare SK, Singh R (2010) Alkaline lipase production from Enterobacter aerogenes by solid-state fermentation of agro-industrial wastes. Int J Environ Waste Manage 5(3–4):410–418
Miyashita K (2009) Function of marine carotenoids. Forum Nutr 61:136–146
Moriwaki C, Costa GL, Pazzetto R, Zanin GM, Moraes FF, Portilho M, Matioli G (2007) Production and characterization of a new cyclodextrin glycosyltransferase from Bacillus firmus isolated from Brazilian soil. Proc Biochem 42(10):1384–1390
Moriwaki C, Ferreira LR, Rodella JRT, Matioli G (2009) A novel cyclodextrin glycosyltransferase from Bacillus sphaericus strain 41: production, characterization and catalytic properties. Biochem Eng J 48(1):124–131
Murakami S, Nishimoto H, Toyama Y, Shimamoto E, Takenaka S, Kaulpiboon J, Prousoontorn M, Limpaseni T, Pongsawasdi P, Aoki K (2007) Purification and characterization of two alkaline, thermotolerant alpha-amylases from Bacillus halodurans 38C-2-1 and expression of the cloned gene in Escherichia coli. Biosci Biotechnol Biochem 71(10):2393–2401
Murmanis L, Highley TL, Palmer JG (1988) The action of isolated brown rot cell free culture filtrate, H2O2-Fe3+ and the combination of both on wood. Wood Sci Technol 22:59–69
Nagar S, Gupta VK, Kumar D, Kumar L, Kuhad RC (2010) Production and optimization of cellulase-free, alkali-stable xylanase by Bacillus pumilus SV-85S in submerged fermentation. J Ind Microbiol Biotechnol 37(1):71–83
Nagayama K, Yamasaki N, Imai M (2002) Fatty acid esterification catalyzed by Candida rugosa lipase in lecithin microemulsion-based organogels. Biochem Eng J 12:231–236
Nakamura N, Watanabe K, Horikoshi K (1975) Purification and some properties of alkaline pullulanase from a strain of Bacillus no. 202-1, an alkalophilic microorganism. Biochim Biophys Acta 397:188–193
Nakamura S, Wakabayashi K, Nakai R, Aono R, Horikoshi K (1993) Purification and some properties of an alkaline xylanase from alkaliphilic Bacillus sp. strain 41 M–1. Appl Environ Microbiol 59:2311–2316
Nawani NN, Kapadnis BP (2003) Chitin degrading potential of bacteria from extreme and moderate environment. Indian J Exp Biol 41(3):248–254
Ndlovu S (2008) Biohydrometallurgy for sustainable development in the African minerals industry. Hydrometallurgy 91(1–4):20–27
Neilands JB (1991) A brief history of iron metabolism. Biol Met 4(1):1–6
Nicholls P, Fita I, Loewen PC (2001) Enzymology and structure of catalases. Adv Inorg Chem 51:51–106
Ningthoujam DS, Kshetri P, Sanasam S, Nimaichand S (2009) Screening, identification of best producers and optimization of extracellular proteases from moderately halophilic alkalithermo-tolerant indigenous actinomycetes. World Appl Sci J 7(7):907–916
Nini L, Sarda L, Comeau LC, Boitard E, Dubès JP, Chahinian H (2001) Lipase-catalysed hydrolysis of short-chain substrates in solution and in emulsion: a kinetic study. Biochim Biophys Acta 1534:34–44
Nizamudeen S, Bajaj BK (2009) A novel thermo-alkalitolerant endoglucanase production using cost-effective agricultural residues as substrates by a newly isolated Bacillus sp. NZ. Food Technol Biotechnol 47(4):435–440
Nonaka T, Fujihashi M, Kita A, Hagihara H, Ozaki K, Ito S, Miki K (2003) Crystal structure of calcium-free α-Amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites. J Biol Chem 278(27):24818–24824
Noureddini H, Gao X, Philkana RS (2005) Immobilized Pseudomonas cepacia lipase for biodiesel fuel production from soybean oil. Bioresour Technol 96:769–777
Ogawa A, Sawada K, Saito K, Hakamada Y, Sumitomo N, Hatada Y, Kobayashi T, Ito S (2000) A new high-alkaline and high-molecular weight pectate lyase from a Bacillus isolate: enzymatic properties and cloning of the gene for the enzyme. Biosci Biotechnol Biochem 64:1133–1141
Okazaki W, Akiba T, Horikoshi K, Akahoshi R (1984) Production and properties of two types of xylanases from alkalophilic thermophilic Bacillus spp. Appl Microbiol Biotechnol 19:335–340
Oksanen T, Pere J, Paavilainen L, Buchert J, Viikari L (2000) Treatment of recycled kraft pulps with Trichoderma reesei hemicellulases and cellulases. J Biotechnol 78:39–48
Olson GJ, Brierley JA, Brierley CL (2003) Bioleaching review part B: Progress in bioleaching: applications of microbial processes by the minerals industries. Appl Microbiol Biotechnol 153:315–324
Osanjo GO, Muthike EW, Tsuma L, Okoth MW, Bulimo WD, Lünsdorf H, Abraham WR, Dion M, Timmis KN, Golyshin PN, Mulaa FJ (2009) A salt lake extremophile, Paracoccus bogoriensis sp. nov., efficiently produces xanthophyll carotenoids. Afr J Microbiol Res 3(8):426–433
Paavilainen S, Helisto P, Korpela T (1994) Conversion of carbohydrates to organic acids by alkaliphilic bacilli. J Ferment Bioeng 78:217–222
Padden AN, Dillon VM, Edmonds J, Collins MD, Alvarez N, John P (1999) An indigo-reducing moderate thermophile from a woad vat, Clostridium isatidis sp. nov. Int J Syst Bacteriol 49:1025–1031
Palozza P, Torelli C, Boninsegna A, Simone R, Catalano A, Mele MC, Picci N (2009) Growth-inhibitory effects of the astaxanthin-rich alga Haematococcus pluvialis in human colon cancer cells. Cancer Lett 283(1):108–117
Pandey A, Nigam P, Soccol CR, Soccol VT, Singh D, Mohan R (2000) Advances in microbial amylases. Biotechnol Appl Biochem 31:135–152
Paszczynski A, Crowford RL, Blanchette RA (1988) Delignification of wood chips and pulps by using natural and synthetic porphyrin: models of fungal decay. Appl Environ Microbiol 54:62–68
Pazarlioglu NK, Sariisik M, Telefoncu A (2005) Treating denim fabrics with immobilized commercial cellulases. Process Biochem 40:767–771
Phucharoen K, Hoshino K, Takenaka Y, Shinozawa T (2002) Purification, characterization, and gene sequencing of a catalase from an alkali- and halo-tolerant bacterium, Halomonas sp. SK1. Biosci Biotechnol Biochem 66(5):955–962
Piao J, Kobayashi T, Adachi S, Nakanishi K, Matsuno R (2003) Synthesis of mono- and dioleoyl erythritols through immobilized-lipase-catalyzed condensation of erythritol and oleic acid in acetone. Biochem Eng J 14:79–84
Pileni MP (2006) Reverse micelles used as templates: a new understanding in nanocrystal growth. J Exp Nanosci 1(1):13–27
Pollock J, Weber KA, Lack J, Achenbach LA, Mormile MR, Coates JD (2007) Alkaline iron(III) reduction by a novel alkaliphilic, halotolerant, Bacillus sp. isolated from salt flat sediments of Soap Lake. Appl Microbiol Biotechnol 77:927–934
Rahman RN, Geok LP, Wong CF, Basri M, Salleh AB (2010) Molecular investigation of a gene encoding organic solvent-tolerant alkaline protease from Pseudomonas aeruginosa strain K. J Basic Microbiol 50(2):143–149
Rai SK, Roy JK, Mukherjee AK (2010) Characterisation of a detergent-stable alkaline protease from a novel thermophilic strain Paenibacillus tezpurensis sp. nov. AS-S24-II. Appl Microbiol Biotechnol 85(5):1437–1450
Raku T, Kitagawa M, Shimakawa H, Tokiwa Y (2003) Enzymatic synthesis of trehalose esters having lipophilicity. J Biotechnol 100:203–208
Rao CS, Sathish T, Ravichandra P, Prakasham RS (2009) Characterization of thermo- and detergent stable serine protease from isolated Bacillus circulans and evaluation of eco-friendly applications. Process Biochem 44:262–268
Rao MB, Tanksale AM, Ghatge MS, Deshpande VV (1998) Molecular and biotechnological aspects of microbial proteases. Microbiol Mol Biol Rev 62:597–635
Ratanakhanokchai K, Kyu KL, Tanticharoen M (1999) Purification and properties of a xylan-binding endoxylanase from alkaliphilic Bacillus sp. strain K-1. Appl Environ Microbiol 65:694–697
Reetz MT, Jaeger KE (1998) Overexpression, immobilization and biotechnological application of Pseudomonas lipases. Chem Phys Lipids 93:3–14
Rhee JK, Ahn DG, Kim YG, Oh JW (2005) New thermophilic and thermostable esterase with sequence similarity to the hormone sensitive lipase family, cloned from a metagenomic library. Appl Environ Microb 71(2):817–825
Ruther A, Misawa N, Böger P, Sandmann G (1997) Production of zeaxanthin in Escherichia coli transformed with different carotenogenic plasmids. Appl Microbiol Biotechnol 48(2):162–167
Safarikova M, Atanasova N, Ivanova V, Weyda F, Tonkova A (2007) Cyclodextrin glucanotransferase synthesis by semicontinuous cultivation of magnetic biocatalysts from cells of Bacillus circulans ATCC 21783. Proc Biochem 42(10):1454–1459
Salwan R, Gulati A, Kasana RC (2010) Phylogenetic diversity of alkaline protease-producing psychrotrophic bacteria from glacier and cold environments of Lahaul and Spiti, India. J Basic Microbiol 50(2):150–159
Sanghi A, Garg N, Gupta VK, Mittal A, Kuhad RC (2010) One-step purification and characterization of cellulase-free xylanase produced by alkalophilic Bacillus subtilis ash. Braz J Microbiol 41(2):467–476
Sato M, Beppu T, Arima K (1980) Properties and structure of a novel peptide antibiotic no. 1970. Agric Biol Chem 44:3037–3040
Savergave LS, Dhule SS, Jogdand VV, Nene SN, Gadre RV (2008) Production and single step purification of cyclodextrin glycosyltransferase from alkalophilic Bacillus firmus by ion exchange chromatography. Biochem Eng J 39(3):510–515
Sawada K, Ogawa A, Ozawa T, Sumitomo N, Hatada Y, Kobayashi T, Ito S (2000) Nucleotide and amino-acid sequences of a new-type pectate lyase from an alkaliphilic strain of Bacillus. Eur J Biochem 267:1510–1515
Saxena RK, Dutt K, Agarwal L, Nayyar P (2007) A highly thermostable and alkaline amylase from a Bacillus sp. PN5. Bioresour Technol 98(2):260–265
Sayyed RZ, Chincholkar SB (2010) Growth and siderophores production in Alcaligenes faecalis is regulated by metal ions. Indian J Microbiol 50(2):179–182
Sayyed RZ, Naphade BS, Chincholkar SB (2004) Ecologically competent rhizobacteria for plant growth promotion and disease management. In: Rai MK, Thakare PV, Chikhale NJ, Wadegaonkar PA, Ramteke AP (eds) Recent trends in biotechnology. Scientific Publishers, Jodhpur, India, pp 1–16
Schallmey M, Singh A, Ward OP (2004) Developments in the use of Bacillus species for industrial production. Can J Microbiol 50:1–17
Schmid G (1989) Cyclodextrin glucanotransferse production: yield enhancement by overexpression of cloned genes. Trends Biotechnol 7:244–248
Schmidt MG (1995) Bleach cleanup with catalase. In: International conference and exhibition of the AATCC, Philadelphia, pp 248–255
Seifzadeh S, Sajedi RH, Sariri R (2008) Isolation and characterization of thermophilic alkaline proteases resistant to sodium dodecyl sulfate and ethylene diamine tetraacetic acid from Bacillus sp. GUS1. Iranian J Biotechnol 6(4):214–221
Shanmughapriya S, Kiran GS, Selvin J, Gandhimathi R, Baskar TB, Manilal A, Sujith S (2009) Optimization, production, and partial characterization of an alkalophilic amylase produced by sponge associated marine bacterium Halobacterium salinarum MMD047. Biotechnol Bioprocess Eng 14:67–75
Shih JCH, Wang JJ (2006) Keratinase technology: from feather degradation and feed additive, to prion destruction. CAB Rev Perspect Agric Vet Sci Nutr Nat Resour 1(42):1–6
Shikata S, Saeki K, Okoshi H, Yoshimatsu T, Ozaki K, Kawai S, Ito S (1990) Alkaline cellulase for laundry detergents: production by alkalophilic strains of Bacillus and some properties of the crude enzymes. Agric Biol Chem 54:91–96
Shintre MS, Ghadge RS, Sawant SB (2002) Kinetics of esterification of lauric acid with fatty alcohols by lipase: effect of fatty alcohol. J Chem Technol Biotechnol 77:1114–1121
Simate GS, Ndlovu S (2008) Bacterial leaching of nickel laterites using chemolithotrophic microorganisms: identifying influential factors using statistical design of experiments. Int J Miner Process 88:31–36
Simoes M (2005) Use of biocides and surfactants to control Pseudomonas fluorescens biofilms. PhD Thesis, University of Minho, Braga, Portugal
Singh LS, Mazumder S, Bora TC (2009) Optimisation of process parameters for growth and bioactive metabolite produced by a salt-tolerant and alkaliphilic actinomycete, Streptomyces tanashiensis strain A2D. J Mycol Med 19(4):225–233
Sivaramakrishnan S, Gangadharan D, Nampoothiri KM, Soccol CR, Pandey A (2006) α-amylases from microbial sources—an overview on recent developments. Food Technol Biotechnol 44:173–184
Sivasankar B (2005) Food processing and preservation. Prentice-Hall of India Pvt. Ltd., New Delhi, India
Sorokin DY, Lysenko AM, Mityushina LL, Tourova TP, Jones BE, Rainey FA, Robertson LA, Kuenen JG (2001) Thialkalimicrobium aerophilum gen. nov., sp. nov. and Thialkalimicrobium sibericum sp. nov., and Thialkalivibrio versutus gen. nov., sp. nov., Thialkalivibrio nitratis sp. nov., novel and Thialkalivibrio denitrificans sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes. Int J Syst Evol Microbiol 51:565–580
Sorokin DY, Tourova TP, Kolganova TV, Sjollema KA, Kuenen JG (2002) Thioalkalispira microaerophila gen. nov., sp. nov., a novel lithoautotrophic, sulfur-oxidizing bacterium from a soda lake. Int J Syst Evol Microbiol 52:2175–2182
Sorokin DY, Tourova TP, Lysenko AM, Kuenen JG (2001) Microbial thiocyanate utilization under highly alkaline conditions. Appl Environ Microbiol 67:528–538
Sorokin DY, Turova TP, Kuznetsov BB, Briantseva IA, Gorlenko VM (2000) Roseinatronobacter thiooxidans gen. nov., sp. nov., a new alkaliphilic aerobic bacteriochlorophyll a—containing bacterium isolated from a soda lake. Mikrobiologiia 69(1):89–97
Sorokin DY, van Pelt S, Tourova TP, Takaichi S, Muyzer G (2007) Acetonitrile degradation under haloalkaline conditions by Natronocella acetinitrilica gen. nov., sp. nov. Microbiology 153:1157–1164
Stella VJ, Rajewski RA (1997) Cyclodextrins: their future in drug formulation and delivery. Pharm Res 14:556–567
Sumitomo N, Ozaki K, Kawai S, Ito S (1992) Nucleotide sequence of the gene for an alkaline endoglucanase from an alkalophilic Bacillus and its expression in Escherichia coli and Bacillus subtilis. Biosci Biotechnol Biochem 6:872–877
Takahara Y, Tanabe O (1960) Studies on the reduction of indigo in industrial fermentation vat (VII). J Ferment Technol 38:329–331
Takaichi S, Oh-Oka H, Maoka T, Jung DO, Madigan MT (2003) Novel carotenoid glucoside esters from alkaliphilic heliobacteria. Arch Microbiol 179(2):95–100
Thajuddin N, Subramanian G (2005) Cyanobacterial biodiversity and potential applications in biotechnology. Curr Sci 89(1):47–57
Thiemann V, Donges C, Prowe SG, Sterner R, Antranikian G (2004) Characterisation of a thermoalkali-stable cyclodextrin glycosyltransferase from the anaerobic thermoalkaliphilic bacterium Anaerobranca gottschalkii. Arch Microbiol 182:226–235
Thumar JT, Dhulia K, Singh SP (2010) Isolation and partial purification of an antimicrobial agent from halotolerant alkaliphilic Streptomyces aburaviensis strain Kut-8. World J Microbiol Biotechnol 26:2081–2087. doi:10.1007/s11274-010-0394-7
Thumar JT, Singh SP (2009) Organic solvent tolerance of an alkaline protease from salt-tolerant alkaliphilic Streptomyces clavuligerus strain Mit-1. J Ind Microbiol Biotechnol 36(2):211–218
le Thuy HA, Phucharoen K, Ideno A, Maruyama T, Shinozawa T (2004) Alkali- and halo-tolerant catalase from Halomonas sp. SK1: overexpression in Escherichia coli, purification, characterization, and genetic modification. Biosci Biotechnol Biochem 68(4):814–819
Trotman ER (1984) Dyeing and chemical technology of textile fibres, vol 285, 6th edn. Charles Griffin and Company Ltd., England, pp 223–230
Tsujibo H, Sato T, Inui M, Yamamoto H, Inamori Y (1988) Intracellular accumulation of phenazine antibiotics production by an alkalophilic actinomycete. Agric Biol Chem 52:301–306
Tsujibo H, Yoshida Y, Miyamoto K, Hasegawa T, Inamori Y (1992) Purification and properties of two types of chitinases produced by an alkalophilic actinomycete. Biosci Biotechnol Biochem 56:1304–1305
Turrensa JF (2010) Superoxide dismutase and catalase. Compr Toxicol 4:219–227. doi:10.1016/B978-0-08-046884-6.00412-7
Tzanov T, Costa S, Guebitz GM, Cavaco-Paulo A (2001) Dyeing in catalase-treated bleaching baths. Color Technol 117:1–5
Uttatree S, Winayanuwattikun P, Charoenpanich J (2010) Isolation and characterization of a novel thermophilic-organic solvent stable lipase from Acinetobacter baylyi. Appl Biochem Biotechnol. doi:10.1007/s12010-010-8928-x
Uygur A (2001) Reuse of decolorized wastewater of azo dyes containing dichlorotriazinyl reactive groups using an advanced oxidation method. Color Technol 117:111–113
van der Maarel MJ, van der Veen B, Uitdehaag JC, Leemhuis H, Dijkhuizen L (2002) Properties and applications of starch-converting enzymes of the α-amylase family. J Biotechnol 94:137–155
Vasavada SH, Thumar JT, Singh SP (2006) Secretion of a potent antibiotic by salt-tolerant and alkaliphilic actinomycete Streptomyces sannanensis strain RJT-1. Curr Sci 91(10):1393–1397
Vassileva A, Atanasova N, Ivanova V, Dhulster P, Tonkova A (2007) Characterisation of cyclodextrin glucanotransferase from Bacillus circulans ATCC 21783 in terms of cyclodextrin production. Ann Microbiol 57:609–615
Vassileva A, Beschkov V, Ivanova V, Tonkova A (2005) Continuous cyclodextrin glucanotransferase production by free and immobilized cells of Bacillus circulans ATCC 21783 in bioreactors. Proc Biochem 40(10):3290–3295
Vigo TL (1994) Textile processing and properties: preparation, dyeing, finishing, and performance. Elsevier, Amsterdam, 11:112–192
Viikari L (1994) Xylanases in bleaching: from an idea to the industry. FEMS Microbiol Rev 13:335–350
Wang HK, Liu RJ, Lu FP, Qi W, Shao J, Ma HJ (2009) A novel alkaline and low-temperature lipase of Burkholderia cepacia isolated from Bohai in China for detergent formulation. Ann Microbiol 59(1):105–110
Wang SL, Lin YT, Liang TW, Chio SH, Ming LJ, Wu PC (2009) Purification and characterization of extracellular lipases from Pseudomonas monteilii TKU009 by the use of soybeans as the substrate. J Ind Microbiol Biot 36(1):65–73
Wang W, Sun M, Liu W, Zhang B (2008) Purification and characterization of a psychrophilic catalase from Antarctic Bacillus. Can J Microbiol 54(10):823–828
Weber KA, Achenbach LA, Coates JD (2006) Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction. Nat Rev Microbiol 4:752–764
Wilson DB, Irwin DC (1999) Genetics and properties of cellulases. In: Scheper T (ed) Advances in biochemical engineering/biotechnology, vol 65. Springer, Berlin Heidelberg New York, pp 1–21
World Enzymes to 2013—Demand and Sales Forecasts, Market Share, Market Size, Market Leaders (2009) http://www.freedoniagroup.com/World-Enzymes.html
Yang C, Wang F, Hao J, Zhang K, Yuan N, Sun M (2010) Identification of a proteolytic bacterium, HW08, and characterization of its extracellular cold-active alkaline metalloprotease Ps5. Biosci Biotechnol Biochem 74(6):1220–1225
Yang C, Wang Z, Li Y, Niu Y, Du M, He X, Ma C, Tang H, Xu P (2010) Metabolic versatility of halotolerant and alkaliphilic strains of Halomonas isolated from alkaline black liquor. Bioresour Technol 101(17):6778–6784
Yang CC, Leong J (1982) Production of deferriferrioxamines B and E from a ferroverdin-producing Streptomyces species. J Bacteriol 149(1):381–383
Yang VW, Zhuang Z, Elegir G, Jeffries TW (1995) Alkaline-active xylanase produced by an alkaliphilic Bacillus sp. isolated from kraft pulp. J Indust Microbiol 15:434–441
Ye Q, Roh Y, Carroll SL, Blair B, Zhou JZ, Zhang CL, Fields M (2004) Alkaline anaerobic respiration: isolation and characterization of a novel alkaliphilic and metal-reducing bacterium. Appl Environ Microbiol 70:5595–5602
Yim DE, Sato HH, Park YH, Park YK (1997) Production of cyclodextrin from starch by cyclodextrin glycosyltransferase from Bacillus firmus and characterization of purified enzyme. J Ind Microbiol Biotechnol 18:402–405
Yoshihara K, Kobayashi Y (1982) Retting of Mitsumata bast by alkalophilic Bacillus in paper making. Agric Biol Chem 46:109–117
Yoshimatsu T, Ozaki K, Shikata S, Ohta Y, Koike K, Kawai S, Ito S (1990) Purification and characterization of alkaline endo-1, 4-β-glucanases from alkalophilic Bacillus sp. KSM-635. J Gen Microbiol 136:1973–1979
Yumoto I, Fukumori Y, Yamanaka T (1990) Purification and characterization of catalase from a facultative alkalophilic Bacillus. J Biochem 108(4):583–587
Yumoto I, Hirota K, Nodasaka Y, Yokota Y, Hoshino T, Nakajima K (2004) Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye. Int J Syst Evol Microbiol 54:2379–2383
Yumoto I, Hishinuma-Narisawa M, Hirota K, Shingyo T, Takebe F, Nodasaka Y, Matsuyama H, Hara I (2004) Exiguobacterium oxidotolerans sp. nov., a novel alkaliphile exhibiting high catalase activity. Int J Syst Evol Microbiol 54:2013–2017
Yumoto I, Ichihashi D, Iwata H, Istokovics A, Ichise N, Matsuyama H, Okuyama H, Kawasaki K (2000) Purification and characterization of a catalase from the facultatively psychrophilic bacterium Vibrio rumoiensis S-1(T) exhibiting high catalase activity. J Bacteriol 182(7):1903–1909
Zain WSWM, Illias RM, Salleh MM, Hassan O, Rahman RA, Hamid AA (2007) Production of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. TS1-1: optimization of carbon and nitrogen concentration in the feed medium using central composite design. Biochem Eng J 33(1):26–33
Zhao J, Lan X, Su J, Sun L, Rahman E (2008) Isolation and identification of an alkaliphilic Bacillus flexus XJU-3 and analysis of its alkaline amylase. Wei Sheng Wu Xue Bao 48(6):750–756
Zheng L, Du Y, Zhang J (2001) Degumming of ramie fibres by alkalophilic bacteria and their polysaccharide-degrading enzymes. Biores Technol 78(1):89–94
Zheng RC, Zheng YG, Shen YC (2010) Acrylamide, microbial production by nitrile hydratase. Encycl Ind Biotechnol Bioprocess Bioseparation Cell Technol 1–39. doi:10.1002/9780470054581.eib004
Acknowledgments
The authors are very grateful to Jaypee Institute of Information Technology, NOIDA, for providing necessary facilities and infrastructure support.
Conflict of interest
The authors declare that no conflicts of interest exist.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Sarethy, I.P., Saxena, Y., Kapoor, A. et al. Alkaliphilic bacteria: applications in industrial biotechnology. J Ind Microbiol Biotechnol 38, 769–790 (2011). https://doi.org/10.1007/s10295-011-0968-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10295-011-0968-x