Abstract
Introgression libraries facilitate the identification of favorable exotic alleles or genomic regions, which can be exploited for improving elite breeding material. We evaluated the first two introgression libraries in rye (Secale cereale L.) on the phenotypic and molecular level. Our objectives were to detect candidate introgression lines (pre-ILs) with a better testcross performance than the recurrent parent and identify donor chromosome segments (DCS) responsible for the improved performance. We introduced DCS from the self-incompatible heterozygous exotic Iranian primitive rye accession Altevogt 14160 (donor) into the genetic background of the elite inbred line L2053-N (recurrent parent) by marker-assisted backcrossing and developed 40 BC2S3 lines in each introgression library. Testcross performance for three agronomic and six quality traits was evaluated in replicated field trials across two testers at five locations over 2 years. The phenotypic effect of the DCS was analyzed for all traits. The pre-ILs had on average a testcross performance comparable to that of the recurrent parent. Significant (P < 0.05) differences between individual pre-ILs and the recurrent parent were detected for all traits except for heading date. For more than 60% of the significant (P < 0.05) differences, the pre-ILs were superior to the recurrent parent. For some pre-ILs, specific DCS were identified containing presumably quantitative trait loci responsible for the superior hybrid performance. Consequently, our study revealed that the development and employment of introgression libraries offers the opportunity for a targeted increase of genetic diversity of elite rye material for hybrid performance of agronomically important traits.
Similar content being viewed by others
References
Bernacchi D, Beck-Bunn T, Emmatty D, Eshed Y, Inai S, Lopez J, Petiard V, Sayama H, Uhlig J, Zamir D, Tanksley S (1998a) Advanced backcross QTL analysis of tomato. II. Evaluation of near-isogenic lines carrying single-donor introgressions for desirable wild QTL-alleles derived from Lycopersicon hirsutum and L. pimpinellifolium. Theor Appl Genet 97:170–180
Bernacchi D, Beck-Bunn T, Eshed Y, Lopez J, Petiard V, Uhlig J, Zamir D, Tanksley S (1998b) Advanced backcross QTL analysis in tomato. I. Identification of QTLs for traits of agronomic importance from Lycopersicon hirsutum. Theor Appl Genet 97:381–397
Börner A, Korzun V, Voylokov AV, Weber WE (1999) Detection of quantitative trait loci on chromosome 5R of rye (Secale cereale L.). Theor Appl Genet 98:1087–1090
Börner A, Korzun V, Voylokov AV, Worland AJ, Weber WE (2000) Genetic mapping of quantitative trait loci in rye (Secale cereale L.). Euphytica 116:203–209
Bulmer MG (1971) The effect of selection on genetic variability. Am Natl 105:201–211
Cochran W, Cox GM (1957) Experimental designs, 2nd edn. Wiley, NY
Concibido VC, La Vallee B, Mclaird P, Pineda N, Meyer J, Hummel L, Yang J, Wu K, Delannay X (2003) Introgression of a quantitative trait locus for yield from Glycine soja into commercial soybean cultivars. Theor Appl Genet 106:575–582
Dunnett C (1955) A multiple comparison procedure for comparing several treatments with a control. J Am Stat Assoc 50:1096–1121
Emrich K, Wilde F, Miedaner T, Piepho H-P (2008) REML approach for adjusting the Fusarium head blight rating to a phenological date in inoculated selection experiments of wheat. Theor Appl Genet 117:65–73
Eshed Y, Zamir D (1994) A genomic library of Lycopersicon pennellii in L. esculentum: a tool for fine mapping of genes. Euphytica 79:175–179
Eshed Y, Zamir D (1995) An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield- associated QTL. Genetics 141:1147–1162
Falke KC, Flachenecker C, Melchinger AE, Piepho H-P, Maurer HP, Frisch M (2007) Temporal changes in allele frequencies in two European F2 flint maize populations under modified recurrent full-sib selection. Theor Appl Genet 114:765–776
Falke KC, Susic Z, Hackauf B, Korzun V, Schondelmaier J, Wilde P, Wehling P, Wortmann H, Mank J, Rouppe van der Voort J, Maurer H, Miedaner T, Geiger HH (2008) Establishment of introgression libraries in hybrid rye (Secale cereale L.) from an Iranian primitive rye accession as a new tool for rye breeding and genomics. Theor Appl Genet 117:641–652
Finkers R, Van Heusden AW, Meijer-Dekens F, Van Kan JAL, Maris P, Lindhout P (2007) The construction of a Solanum habrochaites LYC4 introgression line population and the identification of QTLs for resistance to Botrytis cinerea. Theor Appl Genet 114:1071–1080
Fulton TM, Grandillo S, Beck-Bunn T, Fridman E, Frampton A, Lopez J, Petiard V, Uhlig J, Zamir D, Tanksley SD (2000) Advanced backcross QTL analysis of a Lycopersicon esculentum × Lycopersicon parviflorum cross. Theor Appl Genet 100:1025–1042
Geiger HH, Miedaner T (1999) Hybrid rye and heterosis. In: Coors JG, Pandey S (eds) Genetics and exploitation of heterosis in crops. Crop Sci. Soc., America, pp 439–450
Gur A, Zamir D (2004) Unused natural variation can lift yield barriers in plant breeding. PLoS Biol 2:1610–1615
Haussmann BIG, Parzies HK, Presterl T, Susic Z, Miedaner T (2004) Plant genetic resources in crop improvement. Plant Genet Res 2:3–21
Holland J, Nyquist W, Cervantes-Martinez C (2003) Estimating and interpreting heritability for plant breeding: an update. Plant Breed Rev 22:9–112
Hsu JC (1992) The factor analytic approach to simultaneous inference in the general linear model. J Graph Comput Stat 1:151–168
Huang XQ, Cöster H, Ganal MW, Röder MS (2003) Advanced backcross QTL analysis for the identification of quantitative trait loci alleles from wild relatives of wheat (Triticum aestivum L.). Theor Appl Genet 106:1379–1389
Jeuken M, Pelgrom K, Stam P, Lindhout P (2008) Efficient QTL detection for nonhost resistance in wild lettuce: backcross inbred lines versus F2 population. Theor Appl Genet 10.1007/s00122-008-0718-2
Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172–175
Kunert A, Naz AA, Dedeck O, Pillen K, Leon J (2007) AB-QTL analysis in winter wheat: I. Synthetic hexaploid wheat (T. turgidum ssp. dicoccoides + T. tauschii) as a source of favourable alleles for milling and baking quality traits. Theor Appl Genet 115:683–695
Ladizinsky G (1985) Founder effect in crop-plant evolution. Econ Bot 39:191–199
Lande R, Thompson R (1990) Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124:743–756
Lin SY, Sasaki T, Yano M (1998) Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor Appl Genet 96:997–1003
Liu S, Zhou R, Dong Y, Li P, Jia J (2006) Development, utilization of introgression lines using a synthetic wheat as donor. Theor Appl Genet 112:1360–1373
Lübberstedt T, Melchinger AE, Fähr S, Klein D, Dally A, Westhoff P (1998) QTL mapping in testcrosses of flint lines of maize: III. Comparison across populations for forage traits. Crop Sci 38:1278–1289
Masojc P, Milczarski P (2005) Mapping QTLs for α-amylase activity in rye grain. J Appl Genet 46:115–123
Masojc P, Banek-Tabor A, Milczarski P, Twardowska M (2007) QTLs for resistance to preharvest sprouting in rye (Secale cereale L.). J Appl Genet 48:211–217
Matus I, Corey A, Filichkin T, Hayes PM, Vales MI, Kling J, Riera-Lizarazu O, Sato K, Powell W, Waugh R (2003) Development and characterization of recombinant chromosome substitution lines (RCSLs) using Hordeum vulgare subsp. spontaneum as a source of donor alleles in a Hordeum vulgare subsp. vulgare background. Genome 46:1010–1023
Maurer HP, Melchinger AE, Frisch M (2008) Population genetic simulation and data analysis with Plabsoft. Euphytica 161:133–139
Melchinger AE, Utz HF, Schön CC (1998) Quantitative trait locus (QTL) mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149:383–403
Patterson HD, Williams ER (1976) A new class of resolvable incomplete block designs. Biometrica 63:83–92
Piepho H-P (1999) Stability analysis using the SAS system. Agron J 91:154–160
Piepho H-P, Möhring J (2007) Computing heritability and selection response from unbalanced plant breeding trials. Genetics 177:1881–1888
Piepho H-P, Williams ER, Fleck M (2006) A note on the analysis of designed experiments with complex treatment structure. Hort Sci 41:446–452
Pillen K, Zacharias A, Leon J (2003) Advanced backcross QTL analysis in barley (Hordeum vulgare L.). Theor Appl Genet 107:340–352
R Development Core Team (2004) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna
Ribaut J-M, Ragot M (2007) Marker-assisted selection to improve drought adaptation in maize: the backcross approach, perspectives, limitations, and alternatives. J Exp Bot 58:351–360
SAS Institute (2004) Version 8.2. SAS Institute, Cary
Schmalenbach I, Körber N, Pillen K (2008a) Selecting a set of wild barley introgression lines and verification of QTL effects for resistance to powdery mildew and leaf rust. Theor Appl Genet 117:1093–1106
Schmalenbach I, Léon J, Pillen K (2008b) Identification and verification of QTLs for agronomic traits using wild barley introgression lines. Theor Appl Genet. doi:10.1007/s00122-008-0915-z
Schön CC, Utz FH, Groh S, Truberg B, Openshaw S, Melchinger AE (2004) Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics 167:485–498
Septiningsih EM, Prasetiyono J, Lubis E, Tai TH, Tjubaryat T, Moeljopawiro S, McCouch SR (2003) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1419–1432
Siangliw J, Jongdee B, Pantuwan G, Toojinda T (2007) Developing KDML105 backcross introgression lines using marker-assisted selection for QTLs associated with drought tolerance in rice. Sci Asia 33:207–214
Szalma SJ, Hostert BM, LeDeaux JR, Stuber CW, Holland JB (2007) QTL mapping with near-isogenic lines in maize. Theor Appl Genet 114:1211–1228
Tan L, Liu F, Xue W, Wang G, Ye S, Zhu Z, Fu Y, Wang X, Sun C (2007) Development of Oryza rufipogon and O. sativa introgression lines and assessment for yield-related quantitative trait loci. J Int Plant Biol 49:871–884
Tanksley SD, McCouch S (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063–1066
Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor Appl Genet 92:191–203
Tanksley SD, Grandillo S, Fulton TM, Zamir D, Eshed Y, Petiard V, Lopez J, Beck-Bunn T (1996) Advanced backcross QTL analysis in a cross between an elite processing line of tomato and its wild relative L. pimpinellifolium. Theor Appl Genet 92:213–224
Tian F, De JL, Fu Q, Zuo FZ, Yong CF, Xiang KW, Chuan QS (2006) Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor Appl Genet 112:570–580
Tomerius A-M, Miedaner T, Geiger HH (2008) A model calculation approach towards the optimization of a standard scheme of seed-parent line development in hybrid rye breeding. Plant Breed 127:433–440
Utz HF (2001) PLABSTAT: a computer program for the statistical analysis of plant breeding experiments. Institute for plant breeding, seed science and population genetics. University of Hohenheim, Stuttgart
van Ooijen JW, Voorrips RE (2001) JoinMap Version 3.0 software for the calculation of genetic linkage maps. Plant Research International, Wageningen
von Korff M, Wang H, Leon J, Pillen K (2004) Development of candidate introgression lines using an exotic barley accession (Hordeum vulgare ssp. spontaneum) as donor. Theor Appl Genet 109:1736–1745
von Korff M, Wang H, Leon J, Pillen K (2005) AB-QTL analysis in spring barley. I. Detection of resistance genes against powdery mildew, leaf rust and scald introgressed from wild barley. Theor Appl Genet 111:583–590
von Korff M, Wang H, Leon J, Pillen K (2006) AB-QTL analysis in spring barley: II. Detection of favourable exotic alleles for agronomic traits introgressed from wild barley (H. vulgare ssp. spontaneum). Theor Appl Genet 112:1221–1231
Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler IV ES (2002) Genetic diversity and selection in the maize starch pathway. PNAS 99:12959–12962
Zamir D (2001) Improving plant breeding with exotic genetic libraries. Nat Rev Genet 2:983–989
Acknowledgments
The present study was financially supported by Hybro GmbH & Co KG, and the German Federal Ministry of Economics (BMWi) in the PRO INNO frame work (AIF Grant #KF0141101MD5). The authors thank M. Raith (Universitaet of Hohenheim, Germany), J.-C. Gudehus (KWS LOCHOW GmbH, Bergen, Germany) and Dr. F. J. Fromme (Hybro GmbH & Co KG, Schenkenberg, Germany) for conducting the field trials. We thank Dr. B. Hackauf (JKI, Groß Luesewitz, Germany), Dr. V. Korzun (KWS LOCHOW GmbH, Bergen, Germany), and Dr. J. Schondelmaier (SAATEN-UNION Resistenzlabor, Leopoldshoehe, Germany) for their support with the marker analyses.
Author information
Authors and Affiliations
Corresponding author
Additional information
Communicated by F. Ordon.
Rights and permissions
About this article
Cite this article
Falke, K.C., Sušić, Z., Wilde, P. et al. Testcross performance of rye introgression lines developed by marker-assisted backcrossing using an Iranian accession as donor. Theor Appl Genet 118, 1225–1238 (2009). https://doi.org/10.1007/s00122-009-0976-7
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00122-009-0976-7