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Proteomics Perspectives in Post-Genomic Era for Producing Salinity Stress-Tolerant Crops

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Salinity Responses and Tolerance in Plants, Volume 2

Abstract

Plant growth and productivity are affected by both biotic and abiotic stress factors. Among the abiotic stresses, salt stress is the most prevalent and deleterious environmental factor which limits crop yield globally. Combined with the increasing population and food demands, this poses a great challenge to humanity. Currently, salinity affects more than 20% of the irrigated land. This is estimated to increase drastically in the near future due to the excessive irrigation practices. These factors have necessitated the researchers to understand the salt tolerance mechanisms in plants in order to use various approaches to generate salt-tolerant crops. Due to their sessile nature, plants cannot evade the stressful environment, and therefore, some species have evolved various adaptive strategies to grow and reproduce under unfavorable environments. Salt stress imparts both osmotic and ionic stress to the plants, affecting their metabolism and ion homeostasis, thereby leading to reduced growth and productivity and death in some cases. Salt tolerance is a complex phenomenon involving changes in the biochemical, molecular, and physiological processes of the plant. These changes consisting of a readjustment in the genomic and proteomic complement of the plants are imperative in unraveling the tolerance mechanisms. Recent advances in the omics research have shed more light on a range of promising candidate genes and proteins that render salt tolerance to plants. In this chapter, we describe the general effects of salt stress, the tolerance mechanisms of plants, and how recent advances in the field of proteomics can be utilized to enhance salt tolerance of crop plants.

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Abbreviations

1DE:

One-dimensional gel electrophoresis

2DE:

Two-dimensional gel electrophoresis

ABA:

Abscisic acid

APX:

Ascorbate peroxidase

bHLH:

Basic helix-loop-helix

CAT:

Catalase

CCOMT:

CoA O-methyltransferase

CNGCs:

Cyclic nucleotide-gated channels

DHAR:

Dehydroascorbate reductase

DIGE:

Difference gel electrophoresis

EC:

Electric conductivity

GPX:

Glutathione peroxidase

HKT1:

High-affinity potassium transporter

ICAT:

Isotope-coded affinity tags

iTRAQ:

Isobaric tags for relative and absolute quantitation

JA:

Jasmonic acid

LRR:

Leucine-rich repeat

MAPK:

Mitogen-activated protein kinase

MDAR:

Monodehydroascorbate reductase

MRM:

Multiple reaction monitoring

MS:

Mass spectrometry

MudPIT:

Multidimensional protein identification technology

NaCl:

Sodium chloride

NHX:

Sodium/hydrogen exchanger

NSCC:

Nonselective cation channels

PIP:

Plasma membrane intrinsic proteins

POD:

Peroxidases

PTMs:

Posttranslational modifications

ROS:

Reactive oxygen species

SA:

Salicylic acid

SAM:

S-adenosyl methionine

SILAC:

Stable isotope labeling by amino acids in cell culture

SOD:

Superoxide dismutase

SOS1:

Salt overly sensitive1

SRM:

Selective reaction monitoring

SUMO:

Small ubiquitin-like modifiers

SWATH MS:

Sequential window acquisition of all theoretical mass spectra

TIP:

Tonoplast intrinsic proteins

VDAC:

Voltage-dependent anion channel

VPPase:

Vacuolar pyrophosphatase

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Acknowledgments

The research work in our laboratory is supported by the Singapore National Research Foundation under its Environment and Water Research Programme and administered by PUB, Singapore’s National Water Agency, Singapore, NRF-EWI-IRIS (R-706-000-010-272 and R-706-000-040-279).

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Correspondence to Pannaga Krishnamurthy .

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Krishnamurthy, P., Qingsong, L., Kumar, P.P. (2018). Proteomics Perspectives in Post-Genomic Era for Producing Salinity Stress-Tolerant Crops. In: Kumar, V., Wani, S., Suprasanna, P., Tran, LS. (eds) Salinity Responses and Tolerance in Plants, Volume 2. Springer, Cham. https://doi.org/10.1007/978-3-319-90318-7_10

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