Abstract
Phylloplane, which refers to the surfaces of aboveground parts of plants, includes mainly leaves and has been recognized as an important habitat for microorganisms. The growth of phylloplane microorganisms is dependent on organic and inorganic substances on the leaf surfaces that are either secreted by the plant or originate from external sources. Several factors that structure the microbial communities in phylloplane such as leaf age, plant species, growing conditions, environmental factors, geography and competing microorganisms have been reported. To date, the diversity of microorganisms in the phylloplane has been studied intensively. However, only a small number of articles have focused on yeasts. In this chapter, we review the methodologies, both culture-dependent and culture-independent methods, which have been utilized for assessment of leaf-associated yeasts. The diversity of phylloplane yeasts in the tropical regions assessed by those techniques is discussed. In the course of investigations, phylloplane yeasts in tropical countries have been shown to be highly diverse. Many novel yeast species have been discovered by both culture-dependent and culture-independent methods. These studies suggest that extensive studies of phylloplane yeasts from tropical regions will lead to recovering a so far underappreciated diversity.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Abdelfattah A, Li Destri Nicosia MG, Cacciola SO, Droby S, Schena L (2015) Metabarcoding analysis of fungal diversity in the phyllosphere and carposphere of olive (Olea europaea). PLoS One 10:e0131069
Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143–169
Andrews JH, Harris RE (2000) The ecology and biogeography of microorganisms on plant surfaces. Annu Rev Phytopathol 38:145–180
Belloch C, Querol A, Garcia MD, Barrio E (2000) Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome c oxidase II gene. Int J Syst Evol Microbiol 50:405–416
Boundy-Mills K (2006) Methods for investigating yeast biodiversity. In: Rosa C, Péter G (eds) Biodiversity and ecophysiology of yeasts. Springer, Berlin, pp 67–100
Brandl MT, Lindow SE (1998) Contribution of indole-3-acetic acid production to the epiphytic fitness of Erwinia herbicola. Appl Environ Microbiol 64:3256–3263
Bunster L, Fokkema NJ, Schippers B (1989) Effect of surface active Pseudomonas spp. on leaf wettability. Appl Environ Microbiol 55:1340–1345
Chamnanpa T, Limtong P, Srisuk N, Limtong S (2013) Pseudozyma vetiver sp. nov., a novel anamorphic ustilaginomycetous yeast species isolated from the phylloplane in Thailand. A van Leeuwenhoek 104:637–644
Cordier T, Robin C, Capdevielle X, Desprez-Loustau ML, Vacher C (2012) Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). Fungal Ecol 5:509–520
Daniel HM, Meyer W (2003) Evaluation of ribosomal RNA and actin gene sequences for the identification of ascomycetous yeasts. Int J Food Microbiol 86:71–78
de Azeredo LAI, Gomes EAT, Mendonca-Hagler LC, Hagler AN (1998) Yeast communities associated with sugarcane in Campos, Rio de Janeiro, Brazil. Int Microbiol 1:205–208
de Jager ES, Wehner FC, Korsten L (2001) Microbial ecology of the mango phylloplane. Microb Ecol 42:201–207
Diaz MR, Boekhout T, Theelen B, Fell JW (2000) Molecular sequence analyses of the intergenic spacer (IGS) associated with rDNA of the two varieties of the pathogenic yeast, Cryptococcus neoformans. Syst Appl Microbiol 23:535–545
Dlauchy D, Tornai-Lehoczki J, Fulop L, Péter G (2003) Pichia (Komagataella) pseudopastoris sp. nov., a new yeast species from Hungary. A van Leeuwenhoek 83:327–332
Drage S, Mitter B, Trols C, Muchugi A, Jamnadass RH, Sessitsch A, Hadacek F (2014) Antimicrobial drimane sesquiterpenes and their effect on endophyte communities in the medical tree Warburgia ugandensis. Front Microbiol 5:13
Duong LM, Jeewon R, Lumyong S, Hyde KD (2006) DGGE coupled with ribosomal DNA gene phylogenies reveal uncharacterized fungal phylotypes. Fungal Divers 23:121–138
Fell JW, Boekhout T, Fonseca A, Scorzetti G, Statzell-Tallman A (2000) Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int J Syst Evol Microbiol 50:1351–1371
Fell JW, Scorzetti G, Statzell-Tallman A, Mills KB (2007) Molecular diversity and intragenomic variability in the yeast genus Xanthophyllomyces: the origin of Phaffia rhodozyma? FEMS Yeast Res 7:1399–1408
Fiala V, Glad C, Martin M, Jolivet E, Derridj S (1900) Occurrence of soluble carbohydrates on the phylloplane of maize (Zea mays L.): variations in relation to leaf heterogeneity and position on the plant. New Phytol 115:609–615
Finkel OM, Burch AY, Lindow SE, Post AF, Belkin S (2011) Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree. Appl Environ Microbiol 77:7647–7655
Fisher MM, Triplett EW (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65:4630–4636
Fonseca A, Inácio J (2006) Phylloplane yeasts. In: Rosa C, Péter G (eds) Biodiversity and ecophysiology of yeasts. Springer, Berlin, pp 263–301
Fry SC (1989) Cellulases, hemicelluloses and auxin-stimulated growth: a possible relationship. Physiol Plant 75:532–536
Fungsin B, Hamamoto M, Arunpairojana V, Sukhumavasi J, Atthasampunna P, Nakase T (2001) Bensingtonia thailandica sp. nov., a novel basidiomycetous yeast species isolated from plant leaves in Thailand. Int J Syst Evol Microbiol 51:1209–1213
Fungsin B, Hamamoto M, Arunpairojana V, Sukhumavasi J, Atthasampunna P, Nakase T (2002a) Kockovaella barringtoniae sp. nov., a new basidiomycetous yeast species isolated from a plant leaf collected in a tropical rain forest in Thailand. Int J Syst Evol Microbiol 52:281–284
Fungsin B, Takashima M, Artjariyasripong S, Arunpaiojana V, Hamamoto M, Nakase T (2002b) Bullera arundinariae sp. nov., a new yeast species of ballistoconidium-forming yeast, isolated from a plant in Thailand. Microbiol Cult Coll 18:83–90
Fungsin B, Takashima M, Bai FY, Artjariyasripong S, Nakase T (2003a) Bullera panici sp. nov. and Bullera siamensis sp. nov., two new yeasts in the Bullera variabilis cluster isolated in Thailand. Microbiol Cult Coll 19:23–32
Fungsin B, Takashima M, Artjariyasripong S, Potacharoen W, Nakase T (2003b) Bullera sakaeratica sp. nov., a new species of ballistoconidium-forming yeast found in Thailand. Microbiol Cult Coll 19:33–39
Fungsin B, Takashima M, Sugita T, Atjariyasripong S, Potacharoen W, Tanticharoen M, Nakase T (2006) Bullera koratensis sp. nov. and Bullera lagerstroemiae sp. nov., two new ballistoconidium-forming yeast species in the Trichosporonales-clade isolated from plant leaves in Thailand. J Gen Appl Microbiol 52:73–81
Gao X-X, Zhou H, Xu D-Y, Yu C-H, Chen Y-Q, Qu L-H (2005) High diversity of endophytic fungi from the pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivation-independent approach. FEMS Microbiol Lett 249:255–266
Gelsomino A, Keijzer-Wolters AC, Cacco G, van Elsas JD (1999) Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Methods 38:1–15
Glushakova AM, Chernov IY (2010) Seasonal dynamics of the structure of epiphytic yeast communities. Microbiology 79:830–839
Golubev W, Sampaio J (2009) New filobasidiaceous yeasts found in the phylloplane of a fern. J Gen Appl Microbiol 55:441–446
Hamamoto M, Nagahama T, Tamura M (2002) Systematic study of basidiomycetous yeasts – evaluation of the ITS regions of rDNA to delimit species of the genus Rhodosporidium. FEMS Yeast Res 2:409–413
He YH, Isono S, Shibuya M, Tsuji M, Purushothama CRA, Tanaka K, Sano T (2012) Oligo-DNA custom macroarray for monitoring major pathogenic and non-pathogenic fungi and bacteria in the phyllosphere of apple trees. PLoS One 7:e34249
Hong H, Pruden A, Reardon KF (2007) Comparison of CE-SSCP and DGGE for monitoring a complex microbial community remediating mine drainage. J Microbiol Methods 69:52–64
Inácio J, Portugal L, Spencer-Martins I, Fonseca A (2005) Phylloplane yeasts from Portugal: seven novel anamorphic species in the Tremellales lineage of the Hymenomycetes (Basidiomycota) producing orange-coloured colonies. FEMS Yeast Res 5:1167–1183
Inácio J, Landell MF, Valente P, Wang PH, Wang YT, Yang SH, Manson JS, Lachance MA, Rosa CA, Fonseca A (2008) Farysizyma gen. nov., an anamorphic genus in the Ustilaginales to accommodate three novel epiphytic basidiomycetous yeast species from America, Europe and Asia. FEMS Yeast Res 8:499–508
Inácio J, Ludwig W, Spencer-Martins I, Fonseca A (2010) Assessment of phylloplane yeasts on selected Mediterranean plants by FISH with group- and species-specific oligonucleotide probes. FEMS Microbiol Ecol 71:61–72
Irvine JA, Dix NJ, Warren RC (1978) Inhibitory substances in Acer platanoides leaves: seasonal activity and effects on growth of phylloplane fungi. Trans Br Mycol Soc 70:363–371
Izuno A, Tanabe AS, Toju H, Yamasaki M, Indrioko S, Isagi Y (2016) Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: a massively parallel next-generation sequencing analysis. Mycoscience 57:171–180
Jindamorakot S, Am-In S, Kaewwichian R, Limtong S (2015) Yamadazyma insecticola f.a., sp. nov. and Yamadazyma epiphylla f.a., sp. nov., two novel yeast species. Int J Syst Evol Microbiol 65:1290–1296
Jumpponen A, Jones KL (2009) Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184:438–448
Jumpponen A, Jones KL (2010) Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments. New Phytol 186:496–513
Kachalkin AV, Yurkov AM (2012) Yeast communities in Sphagnum phyllosphere along the temperature-moisture ecocline in the boreal forest-swamp ecosystem and description of Candida sphagnicola sp. nov. A van Leeuwenhoek 102:29–43
Kaeberlein T, Lewis K, Epstein SS (2002) Isolating “uncultivable” microorganisms in pure culture in a simulated natural environment. Science 296:1127–1129
Kaewwichian R, Limtong S (2014) Nakazawaea siamensis f.a., sp. nov., a novel yeast species isolated from phylloplane in Thailand. Int J Syst Evol Microbiol 64:266–270
Kaewwichian R, Yongmanitchai W, Kawasaki H, Limtong S (2012) Metschnikowia saccharicola sp. nov. and Metschnikowia lopburiensis sp. nov., two novel yeast species isolated from phylloplane in Thailand. A van Leeuwenhoek 102:743–751
Kaewwichian R, Kawasaki H, Limtong S (2013a) Wickerhamomyces siamensis sp. nov., a novel yeast species isolated from phylloplane in Thailand. Int J Syst Evol Microbiol 63:1568–1573
Kaewwichian R, Yongmanitchai W, Kawasaki H, Wang PH, Yang SH, Limtong S (2013b) Yamadazyma siamensis sp. nov., Yamadazyma phyllophila sp. nov. and Yamadazyma paraphyllophila sp. nov., three novel yeast species isolated from phylloplane in Thailand and Taiwan. A van Leeuwenhoek 103:777–788
Kaewwichian R, Jindamorakot S, Am-In S, Sipiczki M, Limtong S (2015) Hannaella siamensis sp. nov. and Hannaella phetchabunensis sp. nov., two new anamorphic basidiomycetous yeast species isolated from plants. Int J Syst Evol Microbiol 65:1297–1303
Kato K, Kurimura Y, Makiguchi N, Asai Y (1974) Determination of strongly methanol assimilating yeasts. J Gen Appl Microbiol 20:123–127
Khunnamwong P, Surussawadee J, Jindamorakot S, Limtong S (2014) Wickerhamiella siamensis f.a., sp. nov., a novel endophytic and epiphytic yeast species isolated from sugarcane leaf in Thailand. Int J Syst Evol Microbiol 64:3849–3855
Khunnamwong P, Surussawadee J, Jindamorakot S, Ribeiro JRA, Hagler AN, Limtong S (2015) Occultifur tropicalis f.a., sp. nov., a novel Cystobasidiomycetous yeast species isolated from tropical regions. Int J Syst Evol Microbiol 65:1578–1582
Kirk JL, Beaudette LA, Hart M, Moutoglis P, Klironomos JN, Lee H, Trevors JT (2004) Methods of studying soil microbial diversity. J Microbiol Methods 58:169–188
Koowadjanakul N, Jindamorakot S, Yongmanitchai W, Limtong S (2011) Ogataea phyllophila sp. nov., Candida chumphonensis sp. nov. and Candida mattranensis sp. nov., three methylotrophic yeast species from phylloplane in Thailand. A van Leeuwenhoek 100:207–217
Kuczynski J, Stombaugh J, Walters WA, Gonzalez A, Caporaso JG, Knight R (2012) Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Microbiol 27:1E.5.1–1E.5.20
Kurtzman CP (2014) Use of gene sequence analyses and genome comparisons for yeast systematics. Int J Syst Evol Microbiol 64:325–332
Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. A van Leeuwenhoek 73:331–371
Kurtzman CP, Robnett CJ (2003) Phylogenetic relationships among yeasts of the “Saccharomyces complex” determined from multigene sequence analyses. FEMS Yeast Res 3:417–432
Kurtzman CP, Robnett CJ, Basehoar-Powers E (2008) Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene phylogenetic analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 8:939–954
Kurtzman CP, Jack WF, Boekhout T, Robert V (2011a) Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, vol 2, 5th edn. Elsevier, Amsterdam, pp 87–110
Kurtzman CP, Jack WF, Boekhout T (2011b) Gene sequence analyses and other DNA-based methods for yeast species recognition. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, vol 2, 5th edn. Elsevier, Amsterdam, pp 137–144
Landell MF, Inácio J, Fonseca A, Vainstein MH, Valente P (2009) Cryptococcus bromeliarum sp. nov., an orange-coloured basidiomycetous yeast isolated from bromeliads in Brazil. Int J Syst Evol Microbiol 59:910–913
Landell MF, Billodre R, Ramos JP, Leoncini O, Vainstein MH, Valente P (2010) Candida aechmeae sp. nov. and Candida vrieseae sp. nov., novel yeast species isolated from the phylloplane of bromeliads in Southern Brazil. Int J Syst Evol Microbiol 60:244–248
Landell MF, Brandao LR, Barbosa AC, Ramos JP, Safar SV, Gomes FC, Sousa FM, Morais PB, Broetto L, Leoncini O, Ribeiro JR, Fungsin B, Takashima M, Nakase T, Lee CF, Vainstein MH, Fell JW, Scorzetti G, Vishniac HS, Rosa CA, Valente P (2014) Hannaella pagnoccae sp. nov., a tremellaceous yeast species isolated from plants and soil. Int J Syst Evol Microbiol 64:1970–1977
Landell MF, Brandão LR, Gomes FC, Félix CR, Santos AR, Pagani DM, Ramos JP, Broetto L, Mott T, Vainstein MH, Valente P, Rosa CA (2015) Bullera vrieseae sp. nov., a tremellaceous yeast species isolated from bromeliads. Int J Syst Evol Microbiol 65:2466–2471
Last FT, Price D (1969) Yeasts associated with living plants and their environs. In: Rose AH, Harrison JS (eds) The yeasts, vol 1, 1st edn. Academic Press, New York, pp 183–217
Leaw SN, Chang HC, Sun HF, Barton R, Bouchara JP, Chang TC (2006) Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. J Clin Microbiol 44:693–699
Limtong S, Kaewwichian R (2013) Candida phyllophila sp. nov. and Candida vitiphila sp. nov., two novel yeast species from grape phylloplane in Thailand. J Gen Appl Microbiol 59:191–197
Limtong S, Kaewwichian R (2015) The diversity of culturable yeasts in the phylloplane of rice in Thailand. Ann Microbiol 65:667–675
Limtong S, Koowadjanakul N (2012) Yeasts from phylloplanes and their capability to produce indole-3-acetic acid. World J Mcrobiol Biotechnol 28:3323–3335
Limtong S, Koowadjanakul N, Jindamorakot S, Yongmanitchai W, Nakase T (2012) Candida sirachaensis sp. nov. and Candida sakaeoensis sp. nov. two anamorphic yeast species from phylloplane in Thailand. A van Leeuwenhoek 102:221–229
Limtong S, Kaewwichian R, Groenewald M (2013) Ogataea kanchanaburiensis sp. nov. and Ogataea wangdongensis sp. nov., two novel methylotrophic yeast species from phylloplane in Thailand. A van Leeuwenhoek 103:551–558
Limtong S, Kaewwichian R, Yongmanitchai W, Kawasaki H (2014) Diversity of culturable yeasts in phylloplane of sugarcane in Thailand and their capability to produce indole-3-acetic acid. World J Microbiol Biotechnol 30:1785–1796
Lindow SE, Brandl MT (2003) Microbiology of the phyllosphere. Appl Environ Microbiol 69:1875–1883
Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516–4522
Liu XZ, Wang QM, Boekhout T, Bai FY (2012) Derxomyces amylogenes sp. nov., Derxomyces bambusicola sp. nov. and Derxomyces corylopsis sp. nov., three ballistoconidium-forming yeast species isolated from subtropical plant leaves. Int J Syst Evol Microbiol 62:996–1001
Liu XZ, Wang QM, Göker M, Groenewald M, Kachalkin AV, Lumbsch HT, Millanes AM, Wedin M, Yurkov AM, Boekhout T, Bai FY (2015) Towards an integrated phylogenetic classification of the Tremellomycetes. Stud Mycol 81:85–147
MacNaughton SJ, Stephen JR, Venosa AD, Davis GA, Chang Y-J, White DC (1999) Microbial population changes during bioremediation of an experimental oil spill. Appl Environ Microbiol 65:3566–3574
Maksimova IA, Chernov IY (2004) Community structure of yeast fungi in forest biogeocenoses. Microbiology 73:474–481
Maksimova IA, Yurkov AM, Chernov IY (2009) Spatial structure of epiphytic yeast communities on fruits of Sorbus aucuparia L. Biol Bull 36:613–618
Morris CE, Kinkel LL (2002) Fifty years of phyllosphere microbiology: significant contributions to research in related fields. In: Lindow SE, Hechter-Poinar EI, Elliot VJ (eds) Pyllosphere microbiology. APS Press, Minnesota, pp 365–375
Nakase T, Suzuki M (1985) Ballistospore-forming yeasts found on the surface of the Japanese rice plants Oryza sativa L. J Gen Appl Microbiol 31:457–474
Nakase T, Takashima M (1993) A simple procedure for the high frequency isolation of new taxa of ballistosporous yeasts living on the surfaces of plants. RIKEN Rev 3:33–34
Nakase T, Itoh M, Takematsu A, Mikata K, Banno I, Yamada Y (1991) Kockovaella, a new ballistospore-forming anamorphic yeast genus. J Gen Appl Microbiol 37:175–197
Nakase T, Takashima M, Itoh M, Fungsin B, Potacharoen W, Atthasampunna P, Komagata K (2001) Ballistoconidium-forming yeasts found in the phyllosphere of Thailand. Microbiol Cult Coll 17:23–33
Nakase T, Jindamorakot S, Ninomiya S, Imanishi Y, Kawasaki H (2009) Candida wancherniae sp. nov. and Candida morakotiae sp. nov., two novel ascomycetous anamorphic yeast species found in Thailand. J Gen Appl Microbiol 55:93–100
Nasanit R, Krataithong K, Tantirungkij M, Limtong S (2015a) Assessment of epiphytic yeast diversity in rice (Oryza sativa) phyllosphere in Thailand by a culture-independent approach. A van Leeuwenhoek 107:1475–1149
Nasanit R, Tangwong-o-thai A, Tantirungkij M, Limtong S (2015b) The assessment of epiphytic yeast diversity in sugarcane phyllosphere in Thailand by culture-independent method. Fungal Biol 119:1145–1157
Nasanit R, Jaibangyang S, Tantirungkij M, Limtong S (2016) Yeast diversity and novel yeast D1/D2 sequences from corn phylloplane obtained by a culture-independent approach. A van Leeuwenhoek 109:1615–1634
Ogata K, Nishikawa H, Ohsugi M (1969) A yeast capable of utilizing methanol. Agric Biol Chem 33:13–19
Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci U S A 86:2766–2770
Péter G, Tornai-Lehoczki J, Dlauchy D (2007) Ogataea allantospora sp. nov., an ascomycetous yeast species from phylloplane. A van Leeuwenhoek 92:443–448
Phaff HJ, Starmer WT (1987) Yeasts associated with plants, insects and soil. In: Rose AH, Harrison JS (eds) The yeasts, 2nd edn. Academic Press, London, pp 123–180
Pop M, Salzberg SL (2008) Bioinformatics challenges of new sequencing technology. Trends Genet 24:142–149
Remus-Emsermann MNP, Tecon R, Kowalchuk GA, Leveau JHJ (2012) Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere. ISME J 6:756–765
Santos ARO, Faria ES, Lachance MA, Rosa CA (2015) Ogataea mangiferae sp. nov., a methylotrophic yeast isolated from mango leaves. Int J Syst Evol Microbiol 65:1855–1859
Schocha CL, Seifertb KA, Huhndorfc S, Robertd V, Spougea JL, Levesqueb CA, Chenb W, Fungal Barcoding Consortiuma (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. PNAS 109:6241–6246
Schreiber L, Krimm U, Knoll D, Sayed M, Auling G, Kroppenstedt RM (2005) Plant–microbe interactions: identification of epiphytic bacteria and their ability to alter leaf surface permeability. New Phytol 166:589–594
Schwieger F, Tebbe CC (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64:4870–4876
Scorzetti G, Fell JW, Fonseca A, Statzell-Tallman A (2002) Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Res 2:495–517
Slavikova E, Vadkertiova R, Vranova D (2007) Yeasts colonizing the leaf surfaces. J Basic Microbiol 47:344–350
Sole M, Chatzinotas A, Sridhar KR, Harms H, Krauss G (2008) Improved coverage of fungal diversity in polluted groundwaters by semi-nested PCR. Sci Total Environ 406:324–330
Sugita T, Ikeda R, Shinoda T (2001) Diversity among strains of Cryptococcus neoformans var. gattii as revealed by sequence analysis of multiple genes and chemotype analysis of capsular polysaccharide. Microbiol Immunol 45:757–768
Sugita T, Nakajima M, Ikeda R, Matsushima T, Shinoda T (2002) Sequence analysis of the ribosomal DNA intergenic spacer 1 regions of Trichosporon species. J Clin Microbiol 40:1826–1830
Surussawadee J, Khunnamwong P, Srisuk N, Limtong S (2014) Papiliotrema siamense f.a., sp. nov., a novel yeast species isolated from plant leaf in Thailand. Int J Syst Evol Microbiol 64:3058–3062
Surussawadee J, Jindamorakot S, Nakase T, Lee CF, Limtong S (2015) Hannaella phyllophila sp. nov., a novel basidiomycetous yeast species associated with plants in Thailand and Taiwan. Int J Syst Evol Microbiol 65:2135–2140
Szink I, Davis EL, Ricks KD, Koide RT (2016) New evidence for broad trophic status of leaf endophytic fungi of Quercus gambelii. Fungal Ecol 22:2–9
Takaku H, Kodaira S, Kimoto A, Nashimoto M, Takagi M (2006) Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. J Biosci Bioeng 101:42–50
Takashima M, Nakase T (1998) Bullera penniseticola sp. nov, and Kockovaella sacchari sp. nov., two new yeast species isolated from plants in Thailand. Int J Syst Evol Microbiol 48:1025–1030
Takashima M, Nakase T (2000) Four new species of the genus Sporobolomyces isolated from leaves in Thailand. Mycoscience 41:357–369
Takashima M, Nakase T (2001) Tilletiopsis derxii, Tilletiopsis oryzicola and Tilletiopsis penniseti, three new species of the ustilagionomycetous anamorphic genus Tilletiopsis isolated from leaves in Thailand. A van Leeuwenhoek 80:43–56
Takashima M, Suh SO, Nakase T (1995) Bensingtonia musae sp. nov. isolated from a dead leaf of Musa paradisiaca and its phylogenetic relationship among basidiomycetous yeasts. J Gen Appl Microbiol 41:143–151
Tantirungkij M, Nasanit R, Limtong S (2015) Assessment of endophytic yeast diversity in rice leaves by a culture-independent approach. A van Leeuwenhoek 108:633–647
Tiedje JM, Asuming-Brempong S, Nusslein K, Marsh TL, Flynn SJ (1999) Opening the black box of soil microbial diversity. Appl Soil Ecol 13:109–122
Toome M, Roberson RW, Aime MC (2013) Meredithblackwellia eburnea gen. et sp. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov.-toward resolving higher-level classification in Microbotryomycetes. Mycologia 105:486–495
Vorholt JA (2012) Microbial life in the phyllosphere. Nat Rev Microbiol 10:828–840
Voriskova J, Brabcova V, Cajthaml T, Baldrian P (2014) Seasonal dynamics of fungal communities in a temperate oak forest soil. New Phytol 201:269–278
Wang QM, Boekhout T, Bai FY (2011) Cryptococcus foliicola sp. nov. and Cryptococcus taibaiensis sp. nov., novel basidiomycetous yeast species from plant leaves. J Gen Appl Microbiol 57:285–291
Wang QM, Groenewald M, Takashima M, Theelen B, Han PJ, Liu XZ, Boekhout T, Bai FY (2015a) Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. Stud Mycol 81:27–53
Wang QM, Begerow D, Groenewald M, Liu XZ, Theelen B, Bai FY, Boekhout T (2015b) Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina. Stud Mycol 81:55–83
Wang QM, Yurkov AM, Göker M, Lumbsch HT, Leavitt SD, Groenewald M, Theelen B, Liu XZ, Boekhout T, Bai FY (2015c) Phylogenetic classification of yeasts and related taxa within Pucciniomycotina. Stud Mycol 81:149–189
Weber RW, Becerra J, Silva MJ, Davoli P (2008) An unusual Xanthophyllomyces strain from leaves of Eucalyptus globulus in Chile. Mycol Res 112:861–867
Wuczkowski M, Passoth V, Turchetti B, Andersson AC, Olstorpe M, Laitila A, Theelen B, van Broock M, Buzzini P, Prillinger H, Sterflinger K, Schnürer J, Boekhout T, Libkind D (2011) Description of Holtermanniella gen. nov., including Holtermanniella takashimae sp. nov. and four new combinations, and proposal of the order Holtermanniales to accommodate tremellomycetous yeasts of the Holtermannia clade. Int J Syst Evol Microbiol 61:680–689
Xin G, Glawe D, Doty SL (2009) Characterization of three endophytic, indole-3-acetic acid-producing yeasts occurring in Populus trees. Mycol Res 113:973–980
Yurkov AM, Kachalkin AV, Daniel HM, Groenewald M, Libkind D, de Garcia V, Zalar P, Gouliamova DE, Boekhout T, Begerow D (2015a) Two yeast species Cystobasidium psychroaquaticum f.a. sp. nov. and Cystobasidium rietchieii f.a. sp. nov. isolated from natural environments, and the transfer of Rhodotorula minuta clade members to the genus Cystobasidium. A van Leeuwenhoek 107:173–185
Yurkov A, Inácio J, Chernov I, Fonseca A (2015b) Yeast biogeography and the effects of species recognition approaches: the case study of widespread basidiomycetous species from birch forests in Russia. Curr Microbiol 70:587–601
Zhou ZX, Jiang H, Yang C, Yang MZ, Zhang HB (2010) Microbial community on healthy and diseased leaves of an invasive plant Eupatorium adenophorum in Southwest China. J Microbiol 48:139–145
Zimmerman NB, Vitousek PM (2012) Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape. Proc Natl Acad Sci U S A 109:13022–13027
Zinger L, Gury J, Alibeu O, Rioux D, Gielly L, Sage L, Pompanon F, Geremia RA (2008) CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies. J Microbiol Methods 72:42–53
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this chapter
Cite this chapter
Limtong, S., Nasanit, R. (2017). Phylloplane Yeasts in Tropical Climates. In: Buzzini, P., Lachance, MA., Yurkov, A. (eds) Yeasts in Natural Ecosystems: Diversity. Springer, Cham. https://doi.org/10.1007/978-3-319-62683-3_7
Download citation
DOI: https://doi.org/10.1007/978-3-319-62683-3_7
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-62682-6
Online ISBN: 978-3-319-62683-3
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)