Abstract
Plant growth-promoting rhizobacteria (PGPR) have long been used as inoculant for optimizing legume production, but their survival under hostile field conditions is conflicted. Endophytes among PGPR are the microorganisms that live inside different plant tissues for at least part of their life without harming their host. Beneficial endophytes facilitate plant growth by enhancing uptake of plant nutrients, protecting plants from phytopathogens and increasing tolerance against environmental stresses. Nevertheless, the cellular interactions between pulses and endophytes for improving legumes growth and yields are variable. The endophytic colonization and diversity, various growth promontory aspects, and recent advances in endophyte-legume interactions with consequential impact on legume production have been discussed comprehensively. Considering the importance of endophytic microorganisms, it is likely that their use in agricultural practices will play a pivotal role and offer environmentally friendly strategy for increasing legume productivity while decreasing chemical inputs.
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Abbamondi GR, Tommonaro G, Weyens N, Thijs S, Sillen W, Gkorezis P, Iodice C, Rangel WDM, Nicolaus B, Vangronsveld J (2016) Plant growth-promoting effects of rhizospheric and endophytic bacteria associated with different tomato cultivars and new tomato hybrids. Chem Biol Technol Agric 3:1–10
Adesemoye AO, Torbert HA, Kloepper JW (2009) Plant growth promoting rhizobacteria allow reduced application rates of chemical fertilizers. Microbial Ecol 58:921–929
Agrios GN (2005) Plant pathology, 4th edn. Academic, Amsterdam
Ait Barka E, Nowak J, Clement C (2006) Enhancement of chilling resistance of inoculated grapevine plantlets with a plant growth promoting rhizobacterium, Burkholderia phytofirmans PsJN. Appl Environ Microbiol 72:7246–7252
Akhgar M, Arzanlou R, Bakker PAHM, Hamidpour M (2014) Characterization of 1-Aminocyclopropane-1-carboxylate (ACC) deaminase-containing Pseudomonas spp. in the rhizosphere of salt-stressed canola. Pedosphere 24:461–468
Alami Y, Achouak W, Marol C, Heulin T (2000) Rhizosphere soil aggregation and plant growth promotion of sunflowers by exopolysaccharide producing Rhizobium sp. strain isolated from sunflower roots. Appl Environ Microbiol 66:3393–3398
Annapurna K, Ramadoss D, Bose P, Kumar LV (2013) In situ localization of Paenibacillus polymyxa HKA-15 in roots and root nodules of soybean (Glycine max L.) Plant Soil 373:641–648
Arora NK, Kang SC, Maheshwari DK (2001) Isolation of siderophore-producing strains of Rhizobium meliloti and their biocontrol potential against Macrophomina phaseolina that causes charcoal rot of groundnut. Curr Sci 8:673–677
Banerjee MR, Yesmin L, Vessey JK (2006) Plant growth promoting rhizobacteria as biofertilizers and biopesticides. In: Rai MK (ed) Handbook of microbial biofertilizers. Haworth Press, New York
Barnawal D, Maji D, Bharti N, Chanotiya CS, Kalra A (2013) ACC deaminase-containing Bacillus subtilis reduces stress ethylene-induced damage and improves mycorrhizal colonization and rhizobial nodulation in Trigonella foenum-graecum under drought stress. J Plant Growth Regul 32:809–822
Barnawal D, Bharti N, Maji D, Chanotiya CS, Kalra A (2014) ACC deaminase-containing Arthrobacter protophormiae induces NaCl stress tolerance through reduced ACC oxidase activity and ethylene production resulting in improved nodulation and mycorrhization in Pisum sativum. J Plant Physiol 171:884–894
Bell CR, Dickie GA, Harvey WLG, Chan JWYF (1995) Endophytic bacteria in grapevine. Can J Microbiol 41:46–53
Berg G (2009) Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture. Appl Microbiol Biotechnol 84:11–18
Braun EJ (1990) Colonization of resistant and susceptible maize plants by Envinia stewartii strains differing in exopolysaccharide production. Physiol Mol Plant Pathol 36:363–379
Brittenham GM (1994) New advances in iron metabolism, iron deficiency and iron overload. Curr Opin Hematol 1:549–556
Carlos MH, Stefani PV, Janette AM, Melani MS, Gabriela PO (2016) Assessing the effects of heavy metals in ACC deaminase and IAA production on plant growth-promoting bacteria. Microbiol Res 189:53–61
Celloto VR, Oliveira AJB, Gonçalves JE, Watanabe CSF, Matioli G, Gonçalves RAC (2012) Biosynthesis of indole-3-acetic acid by new Klebsiella oxytoca free and immobilized cells on inorganic matrices. Sci World J 2012:495970. doi:10.1100/2012/495970
Chandra S, Choure K, Dubey RC, Maheshwari DK (2007) Rhizosphere competent Mesorhizobium loti MP6 induced root hair curling, inhibits Sclerotinia sclerotiorum and enhance growth of Indian mustard (Brassica compestris). Braz J Microbiol 38:24–30
Chen W, Sun L, Lu J, Bi L, Wang L, Wei G (2015) Diverse nodule bacteria were associated with Astragalus species in arid region of northwestern China. J Basic Microbiol 55:121–128
Chimwamurombe PM, Grönemeyer JL, Reinhold-Hurek B (2016) Isolation and characterization of culturable seed-associated bacterial endophytes from gnotobiotically grown Marama bean seedlings. FEMS Microbiol Ecol 92(6):fiw083. doi:10.1093/femsec/fiw083
Chiwocha SD, Abrams SR, Ambrose SJ, Cutler AJ, Loewen M, Ross AR, Kermode AR (2003) A method for profiling classes of plant hormones and their metabolites using liquid chromatography-electrospray ionization tandem mass spectrometry: an analysis of hormone regulation of thermodormancy of lettuce (Lactuca sativa L.) seeds. Plant J 35:405–417
Cohen AC, Travaglia CN, Bottini R, Piccoli PN (2009) Participation of abscisic acid and gibberellins produced by endophytic Azospirillum in the alleviation of drought effects in maize. Botany 87:455–462
De Meyer SE, Beuf KD, Vekeman B, Willems A (2015) A large diversity of non-rhizobial endophytes found in legume root nodules in Flanders (Belgium). Soil Biol Biochem 83:1–11
Dudeja SS, Narula N (2008) Molecular diversity of root nodule forming bacteria. In: Khachatourians GG, Arora DK, Rajendran TP, Srivastava AK (eds) Agriculturally important microorganisms. Academic World International, Bhopal, pp 1–24
Dudeja SS, Giri R, Saini R, Suneja-Madan P, Kothe E (2012) Interaction of endophytic microbes with legumes. J Basic Microbiol 52:248–260
Dunne C, Moenne-Loccoz Y, McCarthy J, Higgins P, Powell J, Dowling DN, Gara F (1998) Combining proteolytic and phloroglucinol-producing bacteria for improved control of Pythium-mediated damping off of sugar beet. Plant Pathol 47:299–307
Egamberdieva D, Lugtenberg B (2014) Use of plant growth promoting rhizobacteria to alleviate salinity stress in plants. In: Miransari M (ed) Use of microbes for the alleviation of soil stresses, vol 1. Springer, New York, pp 73–96
Eisenhauer N (2012) Aboveground–belowground interactions as a source of complementarity effects in biodiversity experiments. Plant Soil 35:1–22
Emmert EA, Klimowicz AK, Thomas MG, Handelsman J (2004) Genetics of zwittermicin a production by Bacillus cereus. Appl Environ Microbiol 70:104–113
Fallik E, Sarig S, Okon Y (1994) Morphology and physiology of plant roots associated with Azospirillum. In: Okon Y (ed) Azospirillum/plant associations. CRC, London, pp 77–86
Fernandez O, Theocharis A, Bordiec S, Feil R, Jasquens L, Clement C, Fontaine F, Ait Barka E (2012) Burkholderia phytofirmans PsJN acclimates grapevine to cold by modulating carbohydrate metabolism. Mol Plant Microbe Interact 25:496–504
Gage DJ, Bobo T, Long SR (1996) Use of green fluorescent protein to visualize the early events of symbiosis between Rhizobium melilotiand alfafa (Medicago satia). J Bacteriol 178:7159–7166
Gao K, Mendgen K (2006) Seed-transmitted beneficial endophytic Stagonospora sp. can penetrate the walls of the root epidermis, but does not proliferate in the cortex, of Phragmites australis. Can J Bot 84:981–988
Germaine K (2007) Construction of endophytic xenobiotic degrader bacteria for improving the phytoremediation of organic pollutants. PhD thesis, Institute of Technology Carlow, Ireland
Germaine K, Keogh E, Garcia-Cabellos G, Borremans B, van Der Lelie D, Barac T, Oeyen L, Vangronsveld J, Moore FP, Moore ERB, Campbell CD, Ryan D, Dowling DN (2004) Colonisation of poplar trees by gfp expressing bacterial endophytes. FEMS Microbiol Ecol 48:109–118
Germaine K, Liu X, Cabellos G, Hogan J, Ryan D, Dowling DN (2006) Bacterial endophyte-enhanced phyto-remediation of the organochlorine herbicide 2,4-dichlorophenoxyacetic acid. FEMS Microbiol Ecol 57:302–310
Ghosh PK, Sen SK, Maiti TK (2015) Production and metabolism of IAA by Enterobacter spp. (Gammaproteobacteria) isolated from root nodules of a legume Abrus precatorius L. Biocatal Agric Biotechnol 3:296–303
Gill SS, Tuteja N (2010) Reactive oxygen species and antioxidant machinery in abiotic stress tolerance in crop plants. Plant Physiol Biochem 48:909–930
Glick BR (2012) Plant growth-promoting bacteria: mechanisms and applications. Scientifica 2012:963401. doi:10.6064/2012/963401
Glick BR, TodorovicB CJ, Cheng Z, Duan J, McConkey B (2007) Promotion of plant growth by bacterial ACC deaminase. Crit Rev Plant Sci 26:227–242
Grover WH, Bryan AK, diez-Silva M, Suresh S, Higgins JM, Manalis SR (2011) Measuring single-cell density. Proc Natl Acad Sci U S A 108:10992–10996
Halder AK, Chakrabarty PK (1993) Solubilization of inorganic phosphate by Rhizobium. Folia Microbiol 38:325–330
Hallmann J, Quadt-Hallmann A, Mahaffee WF, Kloepper JW (1997) Bacterial endophytes in agricultural crops. Can J Microbiol 43:895–914
Halo BA, Khan AL, Waqas M, Al-Harrasi A, Hussain J, Ali L, Adnan M, In-Jung L (2015) Endophytic bacteria (Sphingomonas sp. LK11) and gibberellin can improve Solanum lycopersicum growth and oxidative stress under salinity. J Plant Interact 10:117–125
Handelsman J, Stabb EV (1996) Biocontrol of soilborne plant pathogens. Plant Cell 8:1855–1869
Hoque MS, Broadhurst LM, Thrall PH (2011) Genetic characterisation of root nodule bacteria associated with Acacia salicina and Acacia stenophylla (Mimosaceae) across south eastern Australia. Int J Syst Evol Microbiol 61:299–309
Hurek T, Reinhold-Hurek B, Van Montagu M, Kellenberge E (1994) Root colonization and systemic spreading of Azoarcus sp. strain BH72 in grasses. J Bacteriol 176:1913–1923
Ibanez F, Angelini J, Taurian T, Tonelli ML, Fabra A (2009) Endophytic occupation of peanut nodules by opportunistic gamma proteobacteria. Syst Appl Microbiol 32:49–55
Imsande J (1998) Nitrogen de fi cit during soybean pod fill and increased plant biomass by vigorous N2 fixation. Eur J Agron 8:1–11
Jacobs MJ, Bugbee WM, Gabrielson DA (1985) Enumeration, location, and characterization of endophytic bacteria within sugar beet roots. Can J Bot 63:1262–1265
James EK, Gyaneshwar P, Mathan N, Barraquio WL, Reddy PM, Iannetta PP, Olivares FL, Ladha JK (2002) Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67. Mol Plant Microbe Interact 15:894–906
Jasim B, Joseph AA, Jimtha John C, Mathew J, Radhakrishnan EK (2014) Isolation and characterization of plant growth promoting endophytic bacteria from the rhizome of Zingiber officinale. 3 Biotech 4:197–204
Jiang C, Sheng X, Qian M, Wang Q (2008) Isolation and characterization of a heavy metal-resistant Burkholderia sp. from heavy metal-contaminated paddy field soil and its potential in promoting plant growth and heavy metal accumulation in metal-polluted soil. Chemosphere 72:157–164
Jones MPA, Cao J, O’Brien R, Murch SJ, Saxena PK (2007) The mode of action of thidiazuron: auxins, indoleamines, and ion channels in the regeneration of Echinacea purpurea L. Plant Cell 26:1481–1490
Kan FL, Chen ZY, Wang ET, Tian CF, Sui XH, Chen WX (2007) Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai-Tibet plateau and in other zones of China. Arch Microbiol 188:103–115
Khalid A, Arshad M, Zahir ZA (2006) Phytohormones: microbial production and applications. In: Uphoff N, Ball AS, Fernandes E, Herren H, Husson O, Laing M, Palm C, Pretty J, Sanchez P, Sanginga N, Thies J (eds) Biological approaches to sustainable soil systems. Taylor & Francis/CRC, Boca Raton, FL, pp 207–220
Khalifa AYZ, Alsyeeh A, Almalki MA, Saleh FA (2016) Characterization of the plant growth promoting bacterium, Enterobacter cloacae MSR1, isolated from roots of non-nodulating Medicago sativa. Saudi J Biol Sci 23:79–86
Khan AL, Hamayun M, Kang SM, Kim YH, Jung HY, Lee JH, Lee IJ (2012) Endophytic fungal association via gibberellins and indole acetic acid can improve plant growth under abiotic stress: an example of Paecilomyces formosus LHL10. BMC Microbiol 12:3. doi:10.1186/1471-2180-12-3
Khan AL, Waqas M, Asaf S, Kamran M, Shahzad R, Bilal S, Khan MA, Sang-Mo K, Yoon-Ha K, Byung-Wook Y, Al-Rawahi A, Al-Harrasi A, In-Jung L (2017) Plant growth-promoting endophyte Sphingomonas sp. LK11 alleviates salinity stress in Solanum pimpinellifolium. Environ Exp Bot 133:58–69
Kirner S, Hammer PE, Hill DS, Altmann A, Fischer I, Weislo LJ, Lanahan M, van Pée KH, Ligon JM (1998) Functions encoded by pyrrolnitrin biosynthetic genes from Pseudomonas fluorescens. J Bacteriol 180:1939–1943
Kloepper JW, Wei G, Tuzun S (1992) Rhizosphere population dynamics and internal colonization of cucumber by plant growth-promoting rhizobacteria which induce systemic resistance to Colletotrichurn orbiculare. In: Tjamos ES (ed) Biological control of plant diseases. Plenum, New York, pp 185–191
Kobayashi DY, Palumbo JD (2000) Bacterial endophytes and their effects on plants and uses in agriculture. In: Bacon CW, White JF (eds) Microbial endophytes. Dekker, New York, pp 199–236
Konnova SA, Brykova OS, Sachkova OA, Egorenkova IV, Ignatov VV (2001) Protective role of the polysaccharide containing capsular components of Azospirillum brasilense. Microbiology 70:436–440
Kravchenko LV, Azarova TS, Makarova NM, Tikhonovich IA (2004) The effect of tryptophan present in plant root exudates on the phytostimulating activity of rhizobacteria. Microbiology 73:156–158
Kumar V, Pathak DV, Dudeja SS, Saini R, Giri R, Narula S, Anand RC (2013) Legume nodule endophytes more diverse than endophytes from roots of legumes or non-legumes in soils of Haryana, India. J Microbiol Biotech Res 3:83–92
Kusari P, Kusari S, Spiteller M, Kayser O (2015) Implications of endophyte-plant crosstalk in light of quorum responses for plant biotechnology. Appl Microbiol Biotechnol 99:5383–5390
Larrainzar E, Ogara F, Morrissey JP (2005) Application of autofluorescent proteins for insitu studies in microbial ecology 59:257–277
Le Cocq K, Gurr SJ, Hirsch PR, Mauchline TH (2016) Exploitation of endophytes for sustainable agricultural intensification. Mol Plant Pathol 18:469–473. doi:10.1111/mpp.12483
Lei X, Wang ET, Chen WF, Sui XH, Chen WX (2008) Diverse bacteria isolated from root nodules of wild Vicia species grown in temperate region of China. Arch Microbiol 190:657–671
Li Q, Saleh-Lakha S, Glick BR (2005) The effect of native and ACC deaminase containing Azospirillum brasilense Cd1843 on the rooting of carnation cuttings. Can J Microbiol 51:511–514
Li JH, Wang ET, Chen WF, Chen WX (2008) Genetic diversity and potential for promotion of plant growth detected in nodule endophytic bacteria of soybean grown in Heilongjiang province of China. Soil Biol Biochem 40:238–246
Li L, Nagai K, Yin F (2016) Progress in cold roll bonding of metals. Sci Technol Adv Mater 9:023001(11pp). doi:10.1088/1468-6996/9/2/023001
Liu J, Wang ET, da Ren W, Chen WX (2010) Mixture of endophytic Agrobacterium and Sinorhizobium meliloti strains could induce nonspecific nodulation on some woody legumes. Arch Microbiol 192:229–234
Long HH, Schmid DD, Baldwin IT (2008) Native bacterial endophytes promote host growth in a species specific manner, Phytohormone manipulations do not result in common growth responses. PLoS One 3:2702–2708
Mahaffee WF, Kloepper JW, Van Vuurde JWL, Van der Wolf JM, Van den Brink M (1997) Endophytic colonization of Phaseolus vulgaris by Pseudomonas fluorescens strain 89B-27 and Enterobacter asburiae strain JM22. In: Ryder MH, Stephens PM, Bowen GD (eds) Improving plant productivity in Rhizosphere bacteria. CSIRO, Melbourne, p 180
Maheswari TU, Anbukkarasi K, Hemalatha T, Chendrayan K (2013) Studies on phytohormone producing ability of indigenous endophytic bacteria isolated from tropical legume crops. Int J Curr Microbiol Appl Sci 2:127–136
Maougal RT, Bargaz A, Sahel C, Amenc L, Djekoun A, Plassard C, Drevon J (2014) Localization of the Bacillus subtilis beta-propeller phytase transcripts in nodulated roots of Phaseolus vulgaris supplied with phytate. Planta 239:901–908
Martinez-Hidalgo P, Galindo-Villardon P, Trujillo ME, Igual JM, Martýnez-Molina E (2014) Micromonospora from nitrogen fixing nodules of alfalfa (Medicago sativa L.). A new promising plant probiotic bacteria. Sci Rep 4:6389
Martinez-Viveros O, Jorquera MA, Crowley DE, Gajardo G, Mora ML (2010) Mechanisms and practical considerations involved in plant growth promotion by rhizobacteria. J Soil Sci Plant Nutr 10:293–319
Mavrodi DV, Blankenfeldt W, Thomashow LS (2006) Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation. Annu Rev Phytopathol 44:417–445
Mehboob F, Junca H, Schraa G, Stams AJM (2009) Growth of Pseudomonas chloritidismutans AW-1T on n-alkanes with chlorate as electron acceptor. Appl Microbiol Biotechnol 83:739–747
Miche L, Battistoni F, Gemmer S, Belghazi M, Reinhold-Hurek B (2006) Up regulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azoarcus sp. Mol Plant Microbe Interact 19:502–511
Michiels KW, Croes CL, Vanderleyden J (1991) Two different modes of attachment of Azospirillum brasilense sp7 to wheat roots. J Gen Microbiol 137:2241–2246
Miliūtė I, Buzaitė O (2011) IAA production and other plant growth promoting traits of endophytic bacteria from apple tree. Biologija 57:98–102
Milner J, Silo-Suh L, Lee JC, He H, Clardy J, Handelsman J (1996) Production of kanosamine by Bacillus cereus UW85. Appl Environ Microbiol 62:3061–3065
Mitter B, Brader G, Afzal M, Compant S, Naveed M, Trognitz F, Sessitsch A (2013) Advances in elucidating beneficial interactions between plants, soil and bacteria. Adv Agron 121:381–445
Moghaddam MJM, Emtiazi G, Salehi Z (2012) Enhanced auxin production by Azospirillum pure cultures from plant root exudates. J Agric Sci Technol 14:985–994
Munns R (2002) Comparative physiology of salt and water stress. Plant Cell Environ 25:239–250
Muresu R, Polone E, Sulas L, Baldan B, Tondello A, Delogu G, Cappuccinelli P, Alberghini S, Benhizia Y, Benhizia H, Benguedouar A, Mori B, Calamassi R, Dazzo FB, Squartini A (2008) Coexistence of predominantly nonculturable rhizobia with diverse, endophytic bacterial taxa within nodules of wild legumes. FEMS Microbiol Ecol 63:383–400
Muthukumar A, Bhaskaran R, Kumar SK (2010) Efficacy of endophytic Pseudomonas fluorescens (Trevisan) migula against chilli damping-off. J Biopest 3(105):109
Nautiyal CS, Bhadauria S, Kumar P, Lal H, Mondal R, Verma D (2000) Stress induced phosphate solubilization in bacteria isolated from alkaline soils. FEMS Microbiol Lett 182:291–296
Naveed M (2013) Maize endophytes–diversity, functionality and application potential. Ph.D. thesis, AIT–Austrian Institute of Technology/BOKU University, Vienna
Naveed M, Mitter B, Yousaf S, Pastar M, Afzal M, Sessitsch A (2014a) The endophyte Enterobacter sp. FD17: a maize growth enhancer selected based on rigorous testing of plant beneficial traits and colonization characteristics. Biol Fertil Soils 50:249–262
Naveed M, Mitter B, Reichenauer TG, Krzysztof W, Sessitsch A (2014b) Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17. Environ Exp Bot 97:30–39
Naveed M, Hussain MB, Zahir ZA, Mitter B, Sessitsch A (2014c) Drought stress amelioration in wheat through inoculation with Burkholderia phytofirmans strain PsJN. Plant Growth Regul 73:121–131
Navrot N, Rouhier N, Gelhaye E, Jacquot J (2007) Reactive oxygen species generation and antioxidant systems in plant mitochondria. Physiol Plantarum 129:185–195
Neilands JB, Nakamura K (1991) Detection, determination, isolation, characterization and regulation of microbial iron chelates. In: Winkelmann G (ed) Handbook of microbial iron chelates. CRC, London, pp 1–14
Nowak-Thompson B, Chaney N, Wing JS, Gould SJ, Loper JE (1999) Characterization of the pyoluteorin biosynthetic gene cluster of Pseudomonas fluorescens Pf-5. J Bacteriol 181:2166–2174
Oades JM (1993) The role of biology in the formation, stabilization and degradation of soil structure. Geoderma 56:182–186
Orlandelli RC, Vasconcelos AFD, Azevedo JL, Silva MLC, Pamphile JA (2016) Screening of endophytic sources of exopolysaccharides: preliminary characterization of crude exopolysaccharide produced by submerged culture of Diaporthe sp. JF766998 under different cultivation time. Biochimie Open 2:33–40
Oteino N, Lally RD, Kiwanuka S, Lloyd A, Ryan D, Germaine KJ, Dowling DN (2015) Plant growth promotion induced by phosphate solubilising endophytic Pseudomonas isolates. Front Microbiol 6:745
Pablo A, Parisi G, Lattanzi FA, Grimoldi AA, Omacini M (2015) Multi-symbiotic systems: functional implications of the coexistence of grass–endophyte and legume–rhizobia symbioses. Oikos 124:553–560
Palaniappan P, Chauhan PS, Saravanan VS, Anandham R, Sa T (2010) Isolation and characterization of plant growth promoting endophytic bacterial isolates from root nodule of Lespedeza sp. Biol Fertil Soils 46:807–816
Pandya M, Kumar GN, Rajkumar S (2013) Invasion of rhizobial infection thread by non-rhizobia for colonization of Vigna radiata root nodules. FEMS Microbiol Lett 348:58–65
Patten CL, Glick BR (2002) Regulation of indoleacetic acid production in Pseudomonas putida GR12-2 by tryptophan and the stationary-phase sigma factor RpoS. Can J Microbiol 48:635–642
Peterson CA, Emanuel ME, Humphreys GB (1981) Pathway of movement of apoplastic fluorescent dye tracers through the endodermis at the site of secondary root formation in corn (Zea mays) and broad bean (Vicia faba). Can J Bot 59:618–625
Podile AR, Kishore GK (2006) Plant growth promoting rhizobacteria. In: Gnanamanickam SS (ed) Plant associated bacteria. Springer, Amsterdam, pp 195–230
Prasad MP, Dagar S (2014) Identification and characterization of endophytic bacteria from fruits like Avacado and Black grapes. Int J Curr Microbiol Appl Sci 3:937–947
Raaijmakers JM, Vlami M, de Souza JT (2002) Antibiotic production by bacterial biocontrol agents. Antonie Van Leeuwenhoek 81:537–547
Rashid A (1996) Secondary and micronutrients. In: Saghir E, Bantel R (eds) Soil science, pp 341–379
Rivas R, Garcıa-Fraile P, Velazquez E (2009) Taxonomy of bacteria nodulating legumes. Microbiol Insights 2:51–69
Rivera-Cruz MC, Trujillo-Narcía A, Córdova-Ballona G, Kohler J, Caravaca F, Roldán A (2008) Poultry manure and banana wastes are effective biofertilizer carriers for promoting plant growth and soil sustainability in banana crops. Soil Biol Biochem 40:3092–3095
Rodrigues ML, Nimrichter L, Oliveira DL, Nosanchuk JD, Casadevall A (2008) Vesicular trans-cell wall transport in fungi: a mechanism for the delivery of virulence-associated macromolecules. Lipid Insights 2:27–40
Rodriguez GLJ, Valle R, Duran A, Roncero C (2005) Cell integrity signaling activation in response to hyperosmotic shock in yeast. FEBS Lett 579:6186–6190
Rodríguez JP, Beard TD, Bennett EM, Cumming GS, Cork S, Agard J, Dobson AP, Peterson GD (2006) Trade-offs across space, time and ecosystem services. Ecol Soc 11:28. http://www.ecologyandsociety.org/vol11/iss1/art28/
Rouhier N, Lemaire SD, Jacquot JP (2008) The role of glutathione in photosynthetic organisms: emerging functions for glutaredoxins and glutathionylation. Ann Rev Plant Biol 59:143–166
Saini R, Kumar V, Dudeja SS, Pathak DV (2015) Beneficial effects of inoculation of endophytic bacterial isolates from roots and nodules in chickpea. Int J Curr Microbiol Appl Sci 4:207–221
Saleem M, Arshad M, Hussain S, Bhatti AS (2007) Perspective of plant growth promoting rhizobacteria (PGPR) containing ACC deaminase in stress agriculture. J Ind Microbiol Biotechnol 34:635–648
Santner A, Calderon-Villalobos LIA, Estelle M (2009) Plant hormones are versatile chemical regulators of plant growth. Nat Chem Biol 5:301–307
Schank SC, Smith RL, Weiser GC, Zuberere DA, Bouton JH, Quesenberry KH, Tyler ME, Milam JR, Littell RC (1979) Fluorescent antibody technique to identify Azospirillum brasilense associated with roots of grasses. Soil Biol Biochem 11:287–295
Shahzad R, Waqas R, Khan AL, Asaf S, Khan MA, Sang-Mo K, Byung-Wook Y, In-Jung L (2016) Seed-borne endophytic Bacillus amyloliquefaciens RWL-1 produces gibberellins and regulates endogenous phytohormones of Oryza sativa. Plant Physiol Biochem 106:236–243
Shahzad R, Khan AL, Bilal S, Waqas M, Sang-Mo K, In-Jung L (2017) Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa. Environ Exp Bot 136:68–77. doi:10.1016/j.envexpbot.2017.01.010
Sharma A, Johri BN (2003) Growth promoting influence of siderophore producing Pseudomonas strains GRP3A and PRS9 in maize (Zea mays L.) under iron limiting conditions. Microbiol Res 158:243–248
Shi Y, Lou K, Li C (2010) Growth and photosynthetic efficiency promotion of sugar beet (Beta vulgaris L.) by endophytic bacteria. Photosynthesis Res 105:5–13
Silva JM, dos Santos TMC, de Albuquerque LS, Montaldo YC, de Oliveira JUL, da Silva SGM, Nascimento MS, Teixeira Rd RO (2015) Potential of the endophytic bacteria (Herbaspirillum spp. and Bacillus spp.) to promote sugarcane growth. Aust J Crop Sci 9:754–760
Singh SK, Strobel GA, Knighton B, Geary B, Sears J, Ezra D (2011) An endophytic Phomopsis sp. possessing bioactivity and fuel potential with its volatile organic compounds. Microbial Ecol 61:729–739
Spaepen S, Vanderleyden J (2011) Auxin and plant-microbe interactions. Cold Spring Harb Perspect Biol 3:a001438
Stajković O, Meyer SD, Miličić B, Willems A, Delić D (2009) Isolation and characterization of endophytic non-rhizobial bacteria from root nodules of alfalfa (Medicago sativa L.) Bot Serb 33:107–114
Stephen J, Jisha MS (2009) Buffering reduces phosphate solubilizing ability of selected strains of bacteria. World J Agric Sci 5:135–137
Sturz AV, Christie BR (1995) Endophytic bacterial systems governing red clover growth and development. Ann Appl Biol 126:285–290
Subramanian P, Kim K, Krishnamoorthy R, Sundaram S, Sa T (2015) Endophytic bacteria improve nodule function and plant nitrogen in soybean on co-inoculation with Bradyrhizobium japonicum MN110. Plant Growth Regul 76:327–332
Suman A, Yadav AN, Verma P (2016) Endophytic microbes in crops: diversity and beneficial impact for sustainable agriculture. In: Singh DP, Singh HB, Prabha R (eds), Microbial inoculants in sustainable agricultural productivity, vol 1, Springer, New Delhi, pp 117-143
Tanaka F, Ando A, Nakamura T, Takagi H, Shima J (2006) Functional genomic analysis of commercial baker’s yeast during initial stages of model dough-fermentation. Food Microbiol 23:717–728
Tao G, Tian S, Cai M, Xie G (2008) Phosphate solubilizing and mineralizing abilities of bacteria isolated from soils. Pedosphere 18:515–523
Tisdall JM, Oades JM (1982) Organic matter and water stable aggregates in soils. J Soil Sci 33:141–163
Tombolini R, Jansson JK (1998) Monitoring of GFP-tagged bacterial cells. In: La Rossa RA (ed) Methods in molecular biology: bioluminescence methods and protocols. Humana Press, Totowa, pp 285–298
Tombolini R, Unge A, Davey ME, de Bruijn FJ, Jansson JK (1997) Flow cytometric and microscopic analysis of GFP tagged Pseudomonas fluorescens bacteria. FEMS Microbiol Ecol 22:17–28
Trujillo ME, Alonso-Vega P, Rodriguez R, Carro L, Cerda E, Alonso P, Martinez-Molina E (2010) The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifolius. ISME J 4:1265–1281
Vasse J, Frey P, Trigalet A (1995) Microscopic studies of intercellular infection and protoxylem invasion of tomato roots by Pseudomonas solanacearum. Mol Plant Microbe Interact 8:241–251
Verma JP, Yadav J, Yiwari KN, Lavakush SV (2010) Impact of plant growth promoting rhizobacteria on crop production. Int J Agric Res 5:954–983
Villacieros M, Power B, Sánchez-Contreras M, Lloret J, Oruezabal RI, Martín M, Fernández-Piñas F, Bonilla I, Whelan C, Dowling DN, Rivilla R (2003) Colonization behaviour of Pseudomonas fluorescens and Sinorhizobium meliloti in the alfalfa (Medicago sativa) rhizosphere. Plant Soil 251:47–54
Wagh J, Chanchal K, Sonal S, Praveena B, Archana G, Kumar GN (2016) Inoculation of genetically modified endophytic Herbaspirillum seropedicae Z67 endowed with gluconic and 2-ketogluconic acid secretion, confers beneficial effects on rice (Oriza sativa) plants. Plant Soil 409:51–64
Wahid A, Rasul E (2005) Photosynthesis in leaf, stem, flower and fruit. In: Pessarakli M (ed) Handbook of photosynthesis, 3rd edn. CRC, Boca Raton, FL, pp 479–497
Wakelin SA, Warren RA, Harvey PR, Ryder MH (2004) Phosphate solubilization by Penicillium spp. closely associated with wheat roots. Biol Fertil Soils 40:36–43
Weir BS (2011) The current taxonomy of rhizobia New Zealand rhizobia. http://www.rhizobia.co.nz/taxonomy/rhizobia.html
White JF, Monica S (2010) Torres is plant endophyte-mediated defensive mutualism the result of oxidative stress protection? Physiol Plant 138:440–446
Xi C, Lambrecht M, Vanderleyden J, Michiels J (1999) Bi-functional gfp-and gusA-containing mini-Tn5 transposon derivatives for combined gene expression and bacterial localization studies. J Microbiol Methods 35:85–92
Xie X, Li Y, Liu Z, Haruta M, Shen W (2009) Low-temperature oxidation of CO catalysed by Co3O4 nanorods. Nature 458:746–749
Xu L, Zhang Y, Wang L, Chen W, Wei G (2014) Diversity of endophytic bacteria associated with nodules of two indigenous legumes at different altitudes of the Qilian Mountains in China. Syst Appl Microbiol 37:457–465
You CB, Lin M, Fang XJ, Song W (1995) Attachment of Alcaligenes to rice roots. Soil Biol Biochem 27:463–466
Zahir ZA, Ghani U, Naveed M, Nadeem SM, Arshad M (2009) Comparative effectiveness of Pseudomonas and Serratia sp. containing ACC-deaminase for improving growth and yield of wheat under salt-stressed conditions. Arch Microbiol 191:415–424
Zakhia F, Jeder H, Domergue O, Willems A, Cleyet-Marel JC, Gillis M, Dreyfus B, de Lajudie P (2006) Characterization of wild legume nodulating bacteria (LNB) in the infra-arid zone of Tunisia. Syst Appl Microbiol 27:380–395
Zgadzaj R, James EK, Kelly S, Kawaharada Y, de Jonge N, Jensen DB, Madsen LH, Radutoiu S (2015) A legume genetic framework controls infection of nodules by symbiotic and endophytic bacteria. PLoS Genet 11:1–21
Zhang XX, George A, Bailey MJ, Rainey PB (2006) The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings. Microbiology 152:1867–1875
Zhang YF, He LY, Chen ZJ, Wang QY, Qian M, Sheng XF (2011) Characterization of ACC deaminase-producing endophytic bacteria isolated from copper-tolerant plants and their potential in promoting the growth and copper accumulation of Brassica napus. Chemosphere 83:57–62
Zhang HJ, Zhang N, Yang RC, Wang L, Sun QQ, Li DB, Guo YD (2014) Melatonin promotes seed germination under high salinity by regulating antioxidant systems, ABA and GA4 interaction in cucumber (Cucumis sativus L.) J Pineal Res 57:269–279
Zhao LF, YJ X, Ma ZQ, Deng ZS, Shan CJ, Wei GH (2013) Colonization and plant growth promoting characterization of endophytic Pseudomonas chlororaphis strain Zong1 isolated from Sophora alopecuroides root nodules. Braz J Microbiol 44:629–637
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Naveed, M., Aziz, M.Z., Yaseen, M. (2017). Perspectives of Using Endophytic Microbes for Legume Improvement. In: Zaidi, A., Khan, M., Musarrat, J. (eds) Microbes for Legume Improvement. Springer, Cham. https://doi.org/10.1007/978-3-319-59174-2_12
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