Integrative multi-omics approaches to elucidate microbiome dynamics and ecosystem processes

ISSN: 2049-2618 (Online)

In this topical collection (22 articles)

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  1. Research

    Alterations of oral microbiota and impact on the gut microbiome in type 1 diabetes mellitus revealed by integrated multi-omic analyses

    B. J. Kunath, O. Hickl, P. Queirós, C. Martin-Gallausiaux, L. A. Lebrun… Article:243
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  2. Research

    Multi-omic interactions in the gut of children at the onset of islet autoimmunity

    Patrick G. Gavin, Ki Wook Kim, Maria E. Craig, Michelle M. Hill… Article:230
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  3. Research

    Heritability of tomato rhizobacteria resistant to Ralstonia solanacearum

    Jiakang Yin, Ziliang Zhang, Chengcheng Zhu, Taotao Wang, Ruihong Wang… Article:227
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  4. Comment

    The community ecology perspective of omics data

    Stephanie D. Jurburg, François Buscot, Antonis Chatzinotas… Article:225
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  5. Research

    Integrated multi-omics of the gastrointestinal microbiome and ruminant host reveals metabolic adaptation underlying early life development

    Xiaoting Yan, Huazhe Si, Yuhang Zhu, Songze Li, Yu Han, Hanlu Liu, Rui Du… Article:222
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  6. Research

    HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi

    Erin E. Nuccio, Steven J. Blazewicz, Marissa Lafler, Ashley N. Campbell… Article:199
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  7. Research

    Bifidobacterium animalis subsp. lactis Probio-M8 undergoes host adaptive evolution by glcU mutation and translocates to the infant’s gut via oral-/entero-mammary routes through lactation

    Zhi Zhong, Hai Tang, Tingting Shen, Xinwei Ma, Feiyan Zhao, Lai-Yu Kwok… Article:197
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  8. Comment

    The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research

    Julia M. Kelliher, Aaron J. Robinson, Reid Longley, Leah Y. D. Johnson… Article:192
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  9. Research

    Plant sex affects plant-microbiome assemblies of dioecious Populus cathayana trees under different soil nitrogen conditions

    Qingxue Guo, Lin Liu, Jiantong Liu, Helena Korpelainen, Chunyang Li Article:191
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  10. Research

    Bifidobacterial carbohydrate/nucleoside metabolism enhances oxidative phosphorylation in white adipose tissue to protect against diet-induced obesity

    Gihyeon Kim, Youngmin Yoon, Jin Ho Park, Jae Won Park, Myung-guin Noh… Article:188
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  11. Research

    Surface fungal diversity and several mycotoxin-related genes’ expression profiles during the Lunar Palace 365 experiment

    Jianlou Yang, Zikai Hao, Lantao Zhang, Yuming Fu, Hong Liu Article:169
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  12. Research

    Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics

    Hoon Je Seong, Simon Roux, Chung Yeon Hwang, Woo Jun Sul Article:157
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  13. Research

    Strain-level profiling with picodroplet microfluidic cultivation reveals host-specific adaption of honeybee gut symbionts

    Yujie Meng, Shuang Li, Chong Zhang, Hao Zheng Article:140
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  14. Research

    A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome

    Dengwei Zhang, Jian Zhang, Shanthini Kalimuthu, Jing Liu, Zhi-Man Song… Article:91
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  15. Research

    Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom

    Chandni Sidhu, Inga V. Kirstein, Cédric L. Meunier, Johannes Rick… Article:77
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  16. Research

    Microbiota and functional analyses of nitrogen-fixing bacteria in root-knot nematode parasitism of plants

    Ye Li, Shaonan Lei, Zhiqiang Cheng, Lingyue Jin, Ting Zhang, Lian-Ming Liang… Article:48
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  17. Research

    Rapid remodeling of the soil lipidome in response to a drying-rewetting event

    Sneha P. Couvillion, Robert E. Danczak, Dan Naylor, Montana L. Smith… Article:34
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  18. Methodology

    Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

    Manuel Kleiner, Angela Kouris, Marlene Violette, Grace D’Angelo, Yihua Liu… Article:24
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  19. Research

    High-resolution metagenomic reconstruction of the freshwater spring bloom

    Vinicius S. Kavagutti, Paul-Adrian Bulzu, Cecilia M. Chiriac… Article:15
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  20. Research

    Autotrophic biofilms sustained by deeply sourced groundwater host diverse bacteria implicated in sulfur and hydrogen metabolism

    Luis E. Valentin-Alvarado, Sirine C. Fakra, Alexander J. Probst… Article:15
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