Abstract
The common fig (Ficus carica L.) is one of the most remarkable fruit species of the Mediterranean area. Its adaptive potentialities to various ecological areas have contributed to its expansion to other continents and areas with similar climate conditions, resulting in numerous genetically distinct varieties and ecotypes. Since ancient times, the highly nutritious fruits have represented an important energy source for humans and animals and have been used for different purposes in traditional medicine. The functional properties and various chemical compounds with biological activities and diverse applications in food, medicines, and cosmetics have increased interest in F. carica research at the beginning of the twenty-first century. Research approaches have become increasingly interdisciplinary, reflecting attempts to link fig genotype, nutritional properties, pharmacology compounds, and agronomic traits. In this context, the knowledge of fig genetic resources and the extent of genetic diversity of both cultivated and wild figs is essential for identifying and selecting the most promising genotypes for future breeding programs. This chapter is dedicated to the review of past and current efforts and achievements in the fields of common fig diversity, fig genome and transcriptome investigation, development of DNA markers for F. carica and their applications in variety identification procedures and genetic resources management, including characterization and conservation of germplasm at the national and international level.
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Abbreviations
- 1-MCP:
-
1-Methylcyclopropene
- ABA:
-
Abscisic acid
- AFLP:
-
Amplified Fragment Length Polymorphism
- AGB:
-
Active Germplasm Bank
- BERC:
-
Biodiversity and Environmental Research Center
- CAPS:
-
Cleaved Amplified Polymorphic Sequence
- CIHEAM:
-
International Centre for Advanced Mediterranean Agronomic Studies
- CRDA:
-
Commissariat Régional au Développement Agricole
- CRPh:
-
Centre de Recherches Phoénicicoles
- DNA:
-
Deoxyribonucleic acid
- EST:
-
Expressed Sequence Tag
- EST-SSRs:
-
Short Sequence Repeats derived from Expressed Sequence Tag
- FEIS:
-
Faculty of Engineering of Ilha Solteira, University of São Paulo
- GA:
-
Gibberellin
- GWAS:
-
Genome-wide association study
- He:
-
Expected heterozygosity
- Ho:
-
Observed heterozygosity
- HTS:
-
High-throughput sequencing
- INRA:
-
Institut National de la Recherche Agronomique
- IPGRI:
-
International Plant Genetic Resources Institute
- IRA:
-
Institut des Régions Arides
- ISA:
-
Institut Supérieur Agronomique
- ISSR:
-
Inter-Simple Sequence Repeats
- ITS:
-
Internal Transcribed Spacer
- KASP:
-
Kompetitive Allele Specific PCR
- LTR-RE:
-
Long terminal repeat retrotransposon
- mtDNA:
-
Mitochondrial DNA
- n:
-
Number of amplified alleles
- NCGR:
-
National Clonal Germplasm Repository
- ne:
-
Number of effective alleles
- NGS:
-
Next-generation sequencing
- ONT:
-
Oxford Nanopore Technologies
- PacBio:
-
Pacific Biosciences
- PC:
-
Principal Component
- PCA:
-
Principal Component Analysis
- PCR:
-
Polymerase Chain Reaction
- PDO:
-
Protected Designation of Origin
- PI:
-
Probability of identity
- PIC:
-
Polymorphic information content
- RAD-seq:
-
Restriction site-associated DNA sequencing
- RAMPO:
-
Randomly Amplified Microsatellites Polymorphisms
- RAPD:
-
Random Amplified Polymorphic DNA
- RFLP:
-
Restriction Fragment Length Polymorphism
- RNA:
-
Ribonucleic acid
- SMRT:
-
Single-molecule real-time sequencing
- SNP:
-
Single nucleotide polymorphism
- SSR:
-
Simple sequence repeat
- STMS:
-
Sequence-tagged microsatellites
- TE:
-
Transposable element
- TGS:
-
Third-generation sequencing
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Bandelj, D., Baruca Arbeiter, A., Hladnik, M. (2023). Fig Tree Genome and Diversity. In: Ramadan, M.F. (eds) Fig (Ficus carica): Production, Processing, and Properties. Springer, Cham. https://doi.org/10.1007/978-3-031-16493-4_3
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