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Abstract

The common fig (Ficus carica L.) is one of the most remarkable fruit species of the Mediterranean area. Its adaptive potentialities to various ecological areas have contributed to its expansion to other continents and areas with similar climate conditions, resulting in numerous genetically distinct varieties and ecotypes. Since ancient times, the highly nutritious fruits have represented an important energy source for humans and animals and have been used for different purposes in traditional medicine. The functional properties and various chemical compounds with biological activities and diverse applications in food, medicines, and cosmetics have increased interest in F. carica research at the beginning of the twenty-first century. Research approaches have become increasingly interdisciplinary, reflecting attempts to link fig genotype, nutritional properties, pharmacology compounds, and agronomic traits. In this context, the knowledge of fig genetic resources and the extent of genetic diversity of both cultivated and wild figs is essential for identifying and selecting the most promising genotypes for future breeding programs. This chapter is dedicated to the review of past and current efforts and achievements in the fields of common fig diversity, fig genome and transcriptome investigation, development of DNA markers for F. carica and their applications in variety identification procedures and genetic resources management, including characterization and conservation of germplasm at the national and international level.

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Abbreviations

1-MCP:

1-Methylcyclopropene

ABA:

Abscisic acid

AFLP:

Amplified Fragment Length Polymorphism

AGB:

Active Germplasm Bank

BERC:

Biodiversity and Environmental Research Center

CAPS:

Cleaved Amplified Polymorphic Sequence

CIHEAM:

International Centre for Advanced Mediterranean Agronomic Studies

CRDA:

Commissariat Régional au Développement Agricole

CRPh:

Centre de Recherches Phoénicicoles

DNA:

Deoxyribonucleic acid

EST:

Expressed Sequence Tag

EST-SSRs:

Short Sequence Repeats derived from Expressed Sequence Tag

FEIS:

Faculty of Engineering of Ilha Solteira, University of São Paulo

GA:

Gibberellin

GWAS:

Genome-wide association study

He:

Expected heterozygosity

Ho:

Observed heterozygosity

HTS:

High-throughput sequencing

INRA:

Institut National de la Recherche Agronomique

IPGRI:

International Plant Genetic Resources Institute

IRA:

Institut des Régions Arides

ISA:

Institut Supérieur Agronomique

ISSR:

Inter-Simple Sequence Repeats

ITS:

Internal Transcribed Spacer

KASP:

Kompetitive Allele Specific PCR

LTR-RE:

Long terminal repeat retrotransposon

mtDNA:

Mitochondrial DNA

n:

Number of amplified alleles

NCGR:

National Clonal Germplasm Repository

ne:

Number of effective alleles

NGS:

Next-generation sequencing

ONT:

Oxford Nanopore Technologies

PacBio:

Pacific Biosciences

PC:

Principal Component

PCA:

Principal Component Analysis

PCR:

Polymerase Chain Reaction

PDO:

Protected Designation of Origin

PI:

Probability of identity

PIC:

Polymorphic information content

RAD-seq:

Restriction site-associated DNA sequencing

RAMPO:

Randomly Amplified Microsatellites Polymorphisms

RAPD:

Random Amplified Polymorphic DNA

RFLP:

Restriction Fragment Length Polymorphism

RNA:

Ribonucleic acid

SMRT:

Single-molecule real-time sequencing

SNP:

Single nucleotide polymorphism

SSR:

Simple sequence repeat

STMS:

Sequence-tagged microsatellites

TE:

Transposable element

TGS:

Third-generation sequencing

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Correspondence to Dunja Bandelj .

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© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

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Bandelj, D., Baruca Arbeiter, A., Hladnik, M. (2023). Fig Tree Genome and Diversity. In: Ramadan, M.F. (eds) Fig (Ficus carica): Production, Processing, and Properties. Springer, Cham. https://doi.org/10.1007/978-3-031-16493-4_3

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