Skip to main content
Log in

Salinarubrum litoreum gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from Chinese marine solar salterns

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

An Erratum to this article was published on 05 February 2014

Abstract

Three halophilic archaeal strains, XD46T, YJ-63-S1 and ZS-1-H, were isolated from three Chinese marine solar salterns. All were observed to have pleomorphic cells that lysed in distilled water, stained Gram-negative and formed red-pigmented colonies. They were found to grow optimally at 37 °C, at pH 7.0 and in the presence of 2.6 M NaCl and 0.05 M Mg2+. The major polar lipids were identified as those typical for members of the Halobacteriaceae but also included major glycolipids chromatographically identical to sulfated mannosyl glucosyl diether (S-DGD-1), mannosyl glucosyl diether (DGD-1) and two unidentified ones. The 16S rRNA gene sequences of the three strains were 99.8–100 % identical, showing most similarity to sequences of members of the family Halobacteriaceae, and clustering together as a distinct clade in phylogenetic tree reconstructions. The rpoB′ gene similarities between the three strains were 98.7–100 % and lower to the sequences of other halobacteria. Their DNA G+C contents were determined to be 65.1–65.5 mol%. The phenotypic, chemotaxonomic and phylogenetic properties suggest that strains XD46T (=CGMCC 1.12237T = JCM 18649T), YJ-63-S1 (=CGMCC 1.12574) and ZS-1-H (=CGMCC 1.12544) represent a novel species in a new genus within the family Halobacteriaceae, for which the name Salinarubrum litoreum gen. nov., sp. nov. is proposed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Burns DG, Janssen PH, Itoh T, Kamekura M, Echigo A, Dyall-Smith ML (2010) Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer in Southern Australia. Int J Syst Evol Microbiol 60:1196–1199

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Zhou P-J, Oren A, Liu S-J (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13:31–37

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Gao X, Sun F-F, Dong Y, Xu X-W, Zhou Y-G, Liu H-C, Oren A, Zhou P-J (2010a) Halogranum rubrum gen. nov., sp. nov., a halophilic archaeon isolated from a marine solar saltern. Int J Syst Evol Microbiol 60:1366–1371

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Gao X, Yang X, Xu X-W (2010b) Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Extremophiles 14:493–499

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Li X-Y, Gao X, Xu X-W, Zhou Y-G, Liu H-C, Oren A, Zhou P-J (2010c) Halopelagius inordinatus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Int J Syst Evol Microbiol 60:2089–2093

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Sun F-F, Gao X, Dong Y, Xu X-W, Zhou Y-G, Liu H-C, Oren A, Zhou P-J (2010d) Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus. Int J Syst Evol Microbiol 60:1085–1089

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Gao X, Yang X, Xu X-W (2011a) Halolamina pelagica gen. nov., sp. nov., a new member of the family Halobacteriaceae. Int J Syst Evol Microbiol 61:1617–1621

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Yang X, Gao X, Xu X-W (2011b) Halobellus clavatus gen. nov., sp. nov. and Halorientalis regularis gen. nov., sp. nov., two new members of the family Halobacteriaceae. Int J Syst Evol Microbiol 61:2682–2689

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Yang X, Mou Y-Z (2011c) Salinarchaeum laminariae gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from salted brown alga Laminaria. Extremophiles 15:625–631

    Article  CAS  PubMed  Google Scholar 

  • Cui H-L, Mou Y-Z, Yang X, Zhou Y-G, Liu H-C, Zhou P-J (2012) Halorubellus salinus gen. nov., sp. nov. and Halorubellus litoreus sp. nov., novel halophilic archaea isolated from a marine solar saltern. Syst Appl Microbiol 35:30–34

    Article  CAS  PubMed  Google Scholar 

  • Echigo A, Minegishi H, Shimane Y, Kamekura M, Itoh T, Usami R (2013) Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt. Int J Syst Evol Microbiol 63:3556–3562

    Google Scholar 

  • Inoue K, Itoh T, Ohkuma M, Kogure K (2011) Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from seawater aquarium. Int J Syst Evol Microbiol 61:942–946

    Article  CAS  PubMed  Google Scholar 

  • Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118

    Article  CAS  PubMed  Google Scholar 

  • Minegishi H, Echigo A, Nagaoka S, Kamekura M, Usami R (2010a) Halarchaeum acidiphilum gen. nov., sp. nov., a moderately acidophilic haloarchaeon isolated from commercial solar salt. Int J Syst Evol Microbiol 60:2513–2516

    Article  CAS  PubMed  Google Scholar 

  • Minegishi H, Kamekura M, Itoh T, Echigo A, Usami R, Hashimoto T (2010b) Further refinement of Halobacteriaceae phylogeny based on the full-length RNA polymerase subunit B (rpoB′) gene. Int J Syst Evol Microbiol 60:2398–2408

    Article  PubMed  Google Scholar 

  • Mou Y-Z, Qiu X-X, Zhao M-L, Cui H-L, Oh D, Dyall-Smith ML (2012) Halohasta litorea gen. nov. sp. nov., and Halohasta litchfieldiae sp. nov., isolated from the Daliang aquaculture farm, China and from Deep Lake, Antarctica, respectively. Extremophiles 16:895–901

    Article  CAS  PubMed  Google Scholar 

  • Oren A (2006) The order Halobacteriales. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, vol 3, 3rd. edn. Springer, New York, pp 113–164

    Chapter  Google Scholar 

  • Oren A, Ventosa A, Grant WD (1997) Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47:233–238

    Article  Google Scholar 

  • Owen RJ, Pitcher D (1985) Current methods for estimating DNA base composition and levels of DNA–DNA hybridization. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 67–93

    Google Scholar 

  • Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Lee HJ, Oh HM, Bae JW (2007) Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57:2296–2298

    Article  CAS  PubMed  Google Scholar 

  • Shimane Y, Hatada Y, Minegishi H, Mizuki T, Echigo A, Miyazaki M, Ohta Y, Usami R, Grant WD, Horikoshi K (2010) Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt made in Niigata Japan. Int J Syst Evol Microbiol 60:2529–2534

    Article  CAS  PubMed  Google Scholar 

  • Shimane Y, Hatada Y, Minegishi H, Echigo A, Nagaoka S, Miyazaki M, Ohta Y, Maruyama T, Usami R, Grant WD, Horikoshi K (2011) Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt made in Okinawa Japan. Int J Syst Evol Microbiol 61:2006–2010

    Article  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  PubMed Central  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Natural Science Foundation of China (No. 31370054), the grant from China Ocean Mineral Resources R&D Association (COMRA) Special Foundation (DY125-15-R-03), the Qinglan Project of Jiangsu Province and a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Heng-Lin Cui.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Cite this article

Cui, HL., Qiu, XX. Salinarubrum litoreum gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from Chinese marine solar salterns. Antonie van Leeuwenhoek 105, 135–141 (2014). https://doi.org/10.1007/s10482-013-0061-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-013-0061-8

Keywords

Navigation