Skip to main content
Log in

Salinarchaeum laminariae gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from salted brown alga Laminaria

  • Original Paper
  • Published:
Extremophiles Aims and scope Submit manuscript

Abstract

Halophilic archaeal strains R26T and R22 were isolated from the brown alga Laminaria produced at Dalian, Liaoning Province, China. Cells from the two strains were pleomorphic rods and Gram negative, and colonies were red pigmented. Strains R26T and R22 were able to grow at 20–50°C (optimum 37°C) in 1.4–5.1 M NaCl (optimum 3.1–4.3 M) at pH 5.5–9.5 (optimum pH 8.0–8.5) and neither strain required Mg2+ for growth. Cells lyse in distilled water and the minimum NaCl concentration required to prevent cell lysis was 8% (w/v) for strain R26T and 12% (w/v) for strain R22. The major polar lipids of the two strains were phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester and minor phosphatidylglycerol sulfate; glycolipids were not detected. Phylogenetic analyses based on 16S rRNA genes and rpoB′ genes revealed that strains R26T and R22 formed a distinct clade with the closest relative, Natronoarchaeum mannanilyticum. The DNA G+C content of strains R26T and R22 was 65.8 and 66.4 mol%, respectively. The DNA–DNA hybridization value between strains R26T and R22 was 89%. The phenotypic, chemotaxonomic and phylogenetic properties suggest that the strains R26T and R22 represent a novel species in a new genus within the family Halobacteriaceae, for which the name Salinarchaeum laminariae gen. nov., sp. nov. is proposed. The type strain is R26T (type strain R26T = CGMCC 1.10590T = JCM 17267T, reference strain R22 = CGMCC 1.10589).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Burns DG, Janssen PH, Itoh T, Kamekura M, Echigo A, Dyall-Smith ML (2010) Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer in southern Australia. Int J Syst Evol Microbiol 60:1196–1199

    Article  PubMed  CAS  Google Scholar 

  • Castillo AM, Gutiérrez MC, Kamekura M, Ma YH, Cowan DA, Jones BE, Grant WD, Ventosa A (2006) Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China. Int J Syst Evol Microbiol 56:765–770

    Article  PubMed  CAS  Google Scholar 

  • Castillo AM, Gutiérrez MC, Kamekura M, Xue YF, Ma YH, Cowan DA, Jones BE, Grant WD, Ventosa A (2007) Halovivax ruber sp. nov., an extremely halophilic archaeon isolated from Lake Xilinhot, Inner Mongolia, China. Int J Syst Evol Microbiol 57:1024–1027

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Tohty D, Zhou PJ, Liu SJ (2006) Haloterrigena longa sp. nov. and Haloterrigena limicola sp. nov., two extremely halophilic archaea isolated from salt lake. Int J Syst Evol Microbiol 56:1837–1840

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Lin ZY, Dong Y, Zhou PJ, Liu SJ (2007) Halorubrum litoreum sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57:2204–2206

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Zhou PJ, Oren A, Liu SJ (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13:31–37

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Gao X, Sun FF, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ (2010a) Halogranum rubrum gen. nov., sp. nov., a halophilic archaeon isolated from a marine solar saltern. Int J Syst Evol Microbiol 60:1366–1371

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Gao X, Yang X, Xu XW (2010b) Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Extremophiles 14:493–499

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Li XY, Gao X, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ (2010c) Halopelagius inordinatus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern. Int J Syst Evol Microbiol 60:2089–2093

    Article  PubMed  CAS  Google Scholar 

  • Cui HL, Gao X, Yang X, Xu XW (2011) Halolamina pelagica gen. nov., sp. nov., a new member of the family Halobacteriaceae. Int J Syst Evol Microbiol 61:1617–1621

    Article  PubMed  CAS  Google Scholar 

  • De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142

    Article  PubMed  Google Scholar 

  • Dussault HP (1955) An improved technique for staining red halophilic bacteria. J Bacteriol 70:484–485

    PubMed  CAS  Google Scholar 

  • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  PubMed  CAS  Google Scholar 

  • Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416

    Article  Google Scholar 

  • Gonzalez C, Gutierrez C, Ramirez C (1978) Halobacterium vallismortis sp. nov. an amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24:710–715

    Article  PubMed  CAS  Google Scholar 

  • Gutiérrez C, González C (1972) Method for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24:516–517

    PubMed  Google Scholar 

  • Gutiérrez MC, Castillo AM, Kamekura M, Ventosa A (2008) Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. Int J Syst Evol Microbiol 58:2880–2884

    Article  PubMed  Google Scholar 

  • Hezayen FF, Rehm BHA, Tindall BJ, Steinbuchel A (2001) Transfer of Natrialba asiatica B1T to Natrialba taiwanensis sp. nov. and description of Natrialba aegyptiaca sp. nov., a novel extremely halophilic, aerobic, non-pigmented member of the Archaea from Egypt that produces extracellular poly(glutamic acid). Int J Syst Evol Microbiol 51:1133–1142

    Article  PubMed  CAS  Google Scholar 

  • Huß VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192

    Google Scholar 

  • Inoue K, Itoh T, Ohkuma M, Kogure K (2011) Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from seawater aquarium. Int J Syst Evol Microbiol 61:942–946

    Article  PubMed  CAS  Google Scholar 

  • Kates M (1986) Techniques of lipidology, 2nd ed. rev. Elsevier, Amsterdam, pp 106–107, 241–246

  • Kocur M, Hodgkiss W (1973) Taxonomic status of the genus Halococcus Schoop. Int J Syst Bacteriol 23:151–156

    Article  Google Scholar 

  • Kumar S, Dudley J, Nei M, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinforma 9:299–306

    Article  CAS  Google Scholar 

  • Lochhead AG (1934) Bacteriological studies of the red discoloration of salted hides. J Bacteriol 27:51–74

    Google Scholar 

  • Lochhead AG (1943) Note on the taxonomic position of the red chromogenic halophilic bacteria. J Bacteriol 45:574–575

    PubMed  CAS  Google Scholar 

  • Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118

    Article  PubMed  CAS  Google Scholar 

  • McDade JJ, Weaver RH (1959) Rapid methods for the detection of gelatin hydrolysis. J Bacteriol 77:60–64

    PubMed  CAS  Google Scholar 

  • McGenity TJ, Gemmell RT, Grant WD (1998) Proposal of a new halobacterial genus Natrinema gen. nov., with two species Natrinema pellirubrum nom. nov. and Natrinema pallidum nom. nov. Int J Syst Bacteriol 48:1187–1196

    Article  PubMed  Google Scholar 

  • Minegishi H, Echigo A, Nagaoka S, Kamekura M, Usami R (2010a) Halarchaeum acidiphilum gen. nov., sp. nov., a moderately acidophilic haloarchaeon isolated from commercial solar salt. Int J Syst Evol Microbiol 60:2513–2516

    Article  PubMed  CAS  Google Scholar 

  • Minegishi H, Kamekura M, Itoh T, Echigo A, Usami R, Hashimoto T (2010b) Further refinement of Halobacteriaceae phylogeny based on the full-length RNA polymerase subunit B′ (rpoB′) gene. Int J Syst Evol Microbiol 60:2398–2408

    Article  PubMed  Google Scholar 

  • Nagaoka S, Minegishi H, Echigo A, Usami R (2010) Halostagnicola kamekurae sp. nov., an extremely halophilic archaeon from solar salt. Int J Syst Evol Microbiol 60:2828–2831

    Article  PubMed  CAS  Google Scholar 

  • Nagaoka S, Minegishi H, Echigo A, Shimane Y, Kamekura M, Usami R (2011) Halostagnicola alkaliphila sp. nov., a novel alkaliphilic haloarchaeon from commercial rock salt. Int J Syst Evol Microbiol 61:1149–1152

    Article  PubMed  CAS  Google Scholar 

  • Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T (2007) Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int J Syst Evol Microbiol 57:2199–2203

    Article  PubMed  CAS  Google Scholar 

  • Namwong S, Tanasupawat S, Kudo T, Itoh T (2011) Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov. from salt in Thai fish sauce. Int J Syst Evol Microbiol 61:231–236

    Article  PubMed  CAS  Google Scholar 

  • Oren A (2006) The order Halobacteriales. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, vol 3, 3rd edn. Springer, New York, pp 113–164

    Chapter  Google Scholar 

  • Oren A, Ventosa A, Grant WD (1997) Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47:233–238

    Article  Google Scholar 

  • Oren A, Arahal DR, Ventosa A (2009) Emended descriptions of genera of the family Halobacteriaceae. Int J Syst Evol Microbiol 59:637–642

    Article  PubMed  Google Scholar 

  • Roh SW, Bae JW (2009) Halorubrum cibi sp. nov., an extremely halophilic archaeon from salt-fermented seafood. J Microbiol 47:162–166

    Article  PubMed  CAS  Google Scholar 

  • Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Lee HJ, Oh HM, Bae JW (2007a) Natronococcus jeotgali sp. nov., a halophilic archaeon isolated from shrimp jeotgal, a traditional fermented seafood from Korea. Int J Syst Evol Microbiol 57:2129–2131

    Article  PubMed  CAS  Google Scholar 

  • Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Lee HJ, Oh HM, Bae JW (2007b) Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57:2296–2298

    Article  PubMed  CAS  Google Scholar 

  • Roh SW, Nam YD, Chang HW, Kim KH, Sung Y, Kim MS, Oh HM, Bae JW (2009) Haloterrigena jeotgali sp. nov., an extremely halophilic archaeon from salt-fermented food. Int J Syst Evol Microbiol 59:2359–2363

    Article  PubMed  CAS  Google Scholar 

  • Roh SW, Lee ML, Bae JW (2010) Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus. Int J Syst Evol Microbiol 60:1187–1190

    Article  PubMed  CAS  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Shimane Y, Hatada Y, Minegishi H, Mizuki T, Echigo A, Miyazaki M, Ohta Y, Usami R, Grant WD, Horikoshi K (2010) Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt made in Niigata, Japan. Int J Syst Evol Microbiol 60:2529–2534

    Article  PubMed  CAS  Google Scholar 

  • Shimane Y, Hatada Y, Minegishi H, Echigo A, Nagaoka S, Miyazaki M, Ohta Y, Maruyama T, Usami R, Grant WD, Horikoshi K (2011) Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt made in Okinawa, Japan. Int J Syst Evol Microbiol 61:2266–2270

  • Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849

    Article  CAS  Google Scholar 

  • Tapingkae W, Tanasupawat S, Itoh T, Parkin KL, Benjakul S, Visessanguan W (2008) Natrinema gari sp. nov., a halophilic archaeon isolated from fish sauce in Thailand. Int J Syst Evol Microbiol 58:2378–2383

    Article  PubMed  CAS  Google Scholar 

  • Tseng CK (2001) Algal biotechnology industries and research activities in China. J Appl Phycol 13:375–380

    Article  Google Scholar 

  • Xu B, Zhang QS, Qu SC, Cong YZ, Tang XX (2009) Introduction of a seedling production method using vegetative gametophytes to the commercial farming of Laminaria in China. J Appl Phycol 21:171–178

    Article  Google Scholar 

  • Yachai M, Tanasupawat S, Itoh T, Benjakul S, Visessanguan W (2008) Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand. Int J Syst Evol Microbiol 58:2136–2140

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Natural Science Foundation of China (No. 30970006), the opening project of State key Laboratory of Microbial Resources (No. SKLMR-20100604, Institute of Microbiology, Chinese Academy of Sciences) and a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Heng-Lin Cui.

Additional information

Communicated by A. Oren.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary figures (DOC 4534 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Cui, HL., Yang, X. & Mou, YZ. Salinarchaeum laminariae gen. nov., sp. nov.: a new member of the family Halobacteriaceae isolated from salted brown alga Laminaria . Extremophiles 15, 625 (2011). https://doi.org/10.1007/s00792-011-0393-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00792-011-0393-0

Keywords

Navigation