Phenotype Design Space Provides a Mechanistic Framework Relating Molecular Parameters to Phenotype Diversity Available for Selection Michael A. Savageau Original Article Open access 25 August 2023 Pages: 687 - 710
Domain Architecture Based Methods for Comparative Functional Genomics Toward Therapeutic Drug Target Discovery Pavan GollapalliSushmitha RudrappaHulikal Shivashankara Santosh Kumar Review 25 August 2023 Pages: 598 - 615
Systematic Analysis of Diverse Polynucleotide Kinase Clp1 Family Proteins in Eukaryotes: Three Unique Clp1 Proteins of Trypanosoma brucei Motofumi SaitoRerina InoseAkio Kanai Original Article Open access 22 August 2023 Pages: 669 - 686
Pangenomic Analysis of Nucleo-Cytoplasmic Large DNA Viruses. I: The Phylogenetic Distribution of Conserved Oxygen-Dependent Enzymes Reveals a Capture-Gene Process J. A. Campillo-BalderasA. LazcanoA. Becerra Original Article Open access 01 August 2023 Pages: 647 - 668
Informatic Capabilities of Translation and Its Implications for the Origins of Life Bruno Cuevas-ZuviríaZachary R. AdamBetül Kaçar Random Walking 01 August 2023 Pages: 567 - 569
Molecular Evolution of Aryl Hydrocarbon Receptor Signaling Pathway Genes Diksha BhallaVera van Noort Original Article 01 July 2023 Pages: 628 - 646
Evolutionary Consequences of Functional and Regulatory Divergence of HD-Zip I Transcription Factors as a Source of Diversity in Protein Interaction Networks in Plants Natalia ŻyłaDanuta Babula-Skowrońska Review Open access 23 June 2023 Pages: 581 - 597
A Micro-evolutionary Change in Target Binding Sites as a Key Determinant of Ultrabithorax Function in Drosophila Soumen KhanSaurabh J. PradhanL. S. Shashidhara Original Article 21 June 2023 Pages: 616 - 627
Alternative Reading Frames are an Underappreciated Source of Protein Sequence Novelty Zachary Ardern Mini-Review 16 June 2023 Pages: 570 - 580
Sequence Divergence in Venom Genes Within and Between Montane Pitviper (Viperidae: Crotalinae: Cerrophidion) Species is Driven by Mutation–Drift Equilibrium Ramses Alejandro Rosales-GarcíaRhett M. RautsawChristopher L. Parkinson Original Article 03 June 2023 Pages: 514 - 535
Main Factors Shaping Amino Acid Usage Across Evolution Guillermo LamolleDiego SimónHéctor Musto Mini-Review 01 June 2023 Pages: 382 - 390
Decay of Skin-Specific Gene Modules in Pangolins Bernardo PintoRaul ValenteL. Filipe C. Castro Original Article Open access 30 May 2023 Pages: 458 - 470
Unraveling the Drivers of Tumorigenesis in the Context of Evolution: Theoretical Models and Bioinformatics Tools Xunuo ZhuWenyi ZhaoXun Gu Review 29 May 2023 Pages: 405 - 423
Extreme Sensitivity of Fitness to Environmental Conditions: Lessons from #1BigBatch Grant KinslerKara SchmidlinKerry Geiler-Samerotte Original Article Open access 27 May 2023 Pages: 293 - 310
On the Unknown Proteins of Eukaryotic Proteomes Yves-Henri Sanejouand Original Article 23 May 2023 Pages: 492 - 501
Best Practices in Microbial Experimental Evolution Kerry Geiler-SamerotteGregory I. Lang Commentary 20 May 2023 Pages: 237 - 240
Phylogenetic and Evolutionary Analysis of Plant Small RNA 2′-O-Methyltransferase (HEN1) Protein Family Behzad HajieghrariAli Niazi Original Article 16 May 2023 Pages: 424 - 440
Resolving Deleterious and Near-Neutral Effects Requires Different Pooled Fitness Assay Designs Anurag LimdiMichael Baym Original Article 09 May 2023 Pages: 325 - 333
Discovery of Teleost Plasma Kallikrein/Coagulation Factor XI-Like Gene from Channel Catfish (Ictalurus punctatus) and the Evidence that the Protein Encoded by it Acts as a Lectin Shigeyuki TsutsuiAsuka YoshimuraOsamu Nakamura Original Article 08 May 2023 Pages: 536 - 551
Next Generation Sequencing Revolutionizes Organismal Biology Research in Bats Kritika M. GargVinita LambaBalaji Chattopadhyay Review 08 May 2023 Pages: 391 - 404
Adaptive Selection in the Evolution of Aquaglyceroporins in Mammals Shiveeli RajputDevika GautamSachinandan De Original Article 07 May 2023 Pages: 441 - 457
Genetic Diversity and Population Structure of Sorghum (Sorghum bicolor (L.) Moench) Landraces Using DArTseq-Derived Single-Nucleotide Polymorphism (SNP) Markers Phoebe MudakiLydia N. WamalwaWilson Kimani Original Article 05 May 2023 Pages: 552 - 561
Barcoding Populations of Pseudomonas fluorescens SBW25 Loukas TheodosiouAndrew D. FarrPaul B. Rainey Original Article Open access 25 April 2023 Pages: 254 - 262
PAReTT: A Python Package for the Automated Retrieval and Management of Divergence Time Data from the TimeTree Resource for Downstream Analyses Louis-Stéphane Le ClercqAntoinette KotzéDesiré Lee Dalton Original Article Open access 20 April 2023 Pages: 502 - 513
Evolutionary Aspects of Selenium Binding Protein (SBP) Irene DervisiChrysanthi ValassakisAndreas Roussis Original Article Open access 11 April 2023 Pages: 471 - 481
A Possible Aquatic Origin of the Thiaminase TenA of the Human Gut Symbiont Bacteroides thetaiotaomicron Régis StentzJitender CheemaSimon R. Carding Original Article Open access 06 April 2023 Pages: 482 - 491
Analysis of Programmed Cell Death-1 (PD-1) Gene Variations (re11568821 and rs41386349) in HTLV-1 Infection Using One Primer Pair and Proviral Load Yalda Amiri HezaveZohreh SharifiFahime Ranjbar Kermani Original Article 05 April 2023 Pages: 562 - 566
Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution Pieter SpealmanTitir DeDavid Gresham Review Open access 03 April 2023 Pages: 356 - 368
Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays Fangfei LiJason TarkingtonGavin Sherlock Original Article Open access 06 March 2023 Pages: 334 - 344
Structural Characterization of the Chlorophyllide a Oxygenase (CAO) Enzyme Through an In Silico Approach Debayan DeyRyouichi TanakaHisashi Ito Original Article 03 March 2023 Pages: 225 - 235
Understanding the Origin and Evolution of Tea (Camellia sinensis [L.]): Genomic Advances in Tea Zai-Bao ZhangTao XiongTian Luo Review 01 March 2023 Pages: 156 - 168
Identifying Targets of Selection in Laboratory Evolution Experiments Artemiza A. MartínezGregory I. Lang Review 21 February 2023 Pages: 345 - 355
Non-random Codon Usage of Synonymous and Non-synonymous Mutations in the Human HLA-A Gene Tatsuo MatsushitaTamiko Kano-Sueoka Original Article 21 February 2023 Pages: 169 - 191
Evidence Supporting That C-to-U RNA Editing Is the Major Force That Drives SARS-CoV-2 Evolution Jinxiang WangLiqun WuMeiling Cao Original Article 17 February 2023 Pages: 214 - 224
Revisiting the Design of the Long-Term Evolution Experiment with Escherichia coli Richard E. Lenski Review 15 February 2023 Pages: 241 - 253
Loss of Heterozygosity and Its Importance in Evolution Caiti Smukowski Heil Review Open access 08 February 2023 Pages: 369 - 377
Case Studies in the Assessment of Microbial Fitness: Seemingly Subtle Changes Can Have Major Effects on Phenotypic Outcomes Sarah B. WorthanRobert D. P. McCarthyMegan G. Behringer Original Article Open access 08 February 2023 Pages: 311 - 324
Embracing Complexity: Yeast Evolution Experiments Featuring Standing Genetic Variation Molly K. Burke Review Open access 08 February 2023 Pages: 281 - 292
The Mystery of Cancer Resistance: A Revelation Within Nature Devangkumar D. TrivediSarat Kumar DalaiSonal Rajiv Bakshi Review 24 January 2023 Pages: 133 - 155
Is the Association of the Rare rs35667974 IFIH1 Gene Polymorphism With Autoimmune Diseases a Case of RNA Epigenetics? Athena AndreouAthanasios PapakyriakouElias E. Eliopoulos Original Article Open access 18 January 2023 Pages: 204 - 213
Evolution of TOP1 and TOP1MT Topoisomerases in Chordata Filipa MoreiraMiguel ArenasFilipe Pereira Original Article Open access 18 January 2023 Pages: 192 - 203
Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes Milo S. JohnsonSandeep VenkataramSergey Kryazhimskiy Review Open access 18 January 2023 Pages: 263 - 280
2022 Zuckerkandl Prize David A. LiberlesDavid Alvarez-PonceJoana C. Silva Announcement 06 January 2023 Pages: 1 - 1
Biochemical Property Based Positional Matrix: A New Approach Towards Genome Sequence Comparison Sudeshna DeySubhram DasD. K. Bhattacharya Original Article 31 December 2022 Pages: 93 - 131
The Fate of Duplicated Enzymes in Prokaryotes: The Case of Isomerases Alejandro Álvarez-LugoArturo Becerra Original Article 29 December 2022 Pages: 76 - 92
Organophosphorus Compound Formation Through the Oxidation of Reduced Oxidation State Phosphorus Compounds on the Hadean Earth Maheen GullTian FengMatthew A. Pasek Original Article 28 December 2022 Pages: 60 - 75
The Memory Problem for Neutral Mutational Models of Evolution David A. Liberles Commentary 23 December 2022 Pages: 2 - 5
Very Low Rates of Spontaneous Gene Deletions and Gene Duplications in Dictyostelium discoideum Shelbi E. GillFrédéric J. J. Chain Original Article Open access 09 December 2022 Pages: 24 - 32
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