Structural analysis

ISSN: 1471-2105 (Online)

In this topical collection (348 articles)

Page of 18

  1. Research article

    Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

    Joel Hedlund, Hans Jörnvall, Bengt Persson Article:534
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  2. Research article

    Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins

    Shandar Ahmad, Yumlembam Hemajit Singh, Yogesh Paudel, Takaharu Mori… Article:533
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  3. Software

    BALL - biochemical algorithms library 1.3

    Andreas Hildebrandt, Anna Katharina Dehof, Alexander Rurainski… Article:531
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  4. Methodology Article

    PON-SC – program for identifying steric clashes caused by amino acid substitutions

    Jelena Čalyševa, Mauno Vihinen Article:531
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  5. Methodology Article

    Detecting transitions in protein dynamics using a recurrence quantification analysis based bootstrap method

    Wael I. Karain Article:525
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  6. Software

    Glycosylator: a Python framework for the rapid modeling of glycans

    Thomas Lemmin, Cinque Soto Article:513
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  7. Research article

    RNA 3D structure prediction guided by independent folding of homologous sequences

    Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki Article:512
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  8. Research article

    Quantitative prediction model for affinity of drug–target interactions based on molecular vibrations and overall system of ligand-receptor

    Xian-rui Wang, Ting-ting Cao, Cong Min Jia, Xue-mei Tian, Yun Wang Article:497
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  9. Research article

    DIRECT: RNA contact predictions by integrating structural patterns

    Yiren Jian, Xiaonan Wang, Jaidi Qiu, Huiwen Wang, Zhichao Liu… Article:497
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  10. Research article

    DeepQA: improving the estimation of single protein model quality with deep belief networks

    Renzhi Cao, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng Article:495
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  11. Software

    GPU-based detection of protein cavities using Gaussian surfaces

    Sérgio E. D. Dias, Ana Mafalda Martins, Quoc T. Nguyen… Article:493
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  12. Methodology article

    Benchmark datasets of immune receptor-epitope structural complexes

    Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen… Article:490
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  13. Research article

    MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

    Andrew J Bordner, Hans D Mittelmann Article:482
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  14. Research article

    Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23

    David T. Barkan, Xiao-li Cheng, Herodion Celino, Tran T. Tran… Article:481
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  15. Methodology article

    Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors

    Jian Zhang, Lixin Lv, Donglei Lu, Denan Kong… Article:480
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  16. Methodology Article

    A fragment based method for modeling of protein segments into cryo-EM density maps

    Jochen Ismer, Alexander S. Rose, Johanna K. S. Tiemann… Article:475
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  17. Methodology Article

    RNA inverse folding using Monte Carlo tree search

    Xiufeng Yang, Kazuki Yoshizoe, Akito Taneda, Koji Tsuda Article:468
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  18. Research article

    Proper evaluation of chemical cross-linking-based spatial restraints improves the precision of modeling homo-oligomeric protein complexes

    Aljaž Gaber, Gregor Gunčar, Miha Pavšič Article:464
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  19. Software

    DASP3: identification of protein sequences belonging to functionally relevant groups

    Janelle B. Leuthaeuser, John H. Morris, Angela F. Harper… Article:458
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  20. Research Article

    LCS-TA to identify similar fragments in RNA 3D structures

    Jakub Wiedemann, Tomasz Zok, Maciej Milostan, Marta Szachniuk Article:456
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