Skip to main content
Log in

A segregation distortion locus located on linkage group 4 of the chickpea genetic map

  • Published:
Euphytica Aims and scope Submit manuscript

An Erratum to this article was published on 02 March 2011

Abstract

A chickpea F2 population of 593 plants derived from the intraspecific cross ILC3279 × WR315 was genotyped for markers closely linked to quantitative trait loci (QTLs) for ascochyta blight resistance (QTLAR1 and QTLAR2 located on linkage group 4 and QTLAR3 on linkage group 2). All the markers located on linkage group 4 exhibited strongly distorted segregation with respect to the expected Mendelian inheritance, towards the male parental line. This skewed segregation was also observed in a second F2 population of 50 plants derived from the same cross, confirming the presence of a region of distorted segregation on this linkage group and its heritability. The most skewed markers were SC-Y17 and TA72, which were tightly linked to each other, indicating that they may both be closely associated with the genetic factor responsible for segregation distortion in chickpea. To attempt to explain the non-Mendelian segregation, by identifying factors to which it could be attributed, three different chi-square tests were carried out to test different hypotheses using the data obtained from examining co-dominant markers associated with segregation distortion. According to our results, the distorted segregation could be caused by gametophytic factors that affect either male or female gametes. Pollen fertility and meiosis were also analysed to determine their relationship with segregation distortion; however, these not seem to be inducing factors in the non-Mendelian segregation reported in this study.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Abbo S, Molina C, Jungmann R, Grusak MA, Berkovitch Z, Reifen R, Kahl G, Winter P, Reifen R (2005) Quantitative trait loci governing carotenoid concentration and weight in seeds of chickpea (Cicer arietinum L.). Theor Appl Genet 111:185–195

    Article  PubMed  CAS  Google Scholar 

  • Cho S, Chen W, Muehlbauer FJ (2004) Pathotype-specific genetic factors in chickpea (Cicer arietinum L.) for quantitative resistance to ascochyta blight. Theor Appl Genet 109:733–739

    Article  PubMed  Google Scholar 

  • Cobos MJ, Rubio J, Strange RN, Moreno MT, Gil J, Millán T (2006) A new QTL for ascochyta blight resistance in an RIL population derived from an interspecific cross in chickpea. Euphytica 149:105–111

    Article  Google Scholar 

  • Cobos MJ, Winter P, Kharrat M, Cubero JI, Gil J, Millán T, Rubio J (2009) Genetic analysis of agronomic traits in a wide cross of chickpea. Field Crops Res 111:130–136

    Article  Google Scholar 

  • Collard BCY, Pang ECK, Ades PK, Taylor PWJ (2003) Preliminary investigation of QTL associated with seedling resistance to ascochyta blight from Cicer echinospermum, a wild relative of chickpea. Theor Appl Genet 107:719–729

    Article  PubMed  CAS  Google Scholar 

  • Flandez-Galvez H, Ades PK, Ford R, Pang ECK, Taylor PWJ (2003) QTL analysis for ascochyta blight resistance in an intraspecific population of chickpea (Cicer arietinum L.). Theor Appl Genet 107:1257–1265

    Article  PubMed  CAS  Google Scholar 

  • Iruela M, Rubio J, Barro F, Cubero JI, Millán T, Gil J (2006) Detection of two quantitative trait loci for resistance to ascochyta blight in an intra-specific cross of chickpea (Cicer arietinum L.): development of SCAR markers associated with resistance. Theor Appl Genet 112:278–287

    Article  PubMed  CAS  Google Scholar 

  • Iruela M, Castro P, Rubio J, Cubero JI, Jacinto C, Millán T, Gil J (2007) Validation of a QTL for resistance to ascochyta blight linked to resistance to fusarium wilt race 5 in chickpea (Cicer arietinum L.). Eur J Plant Pathol 119:29–37

    Article  Google Scholar 

  • Kaló P, Endre G, Zimányi L, Csanádi G (2000) Construction of an improved linkage map of diploid alfalfa (Medicago sativa). Theor Appl Genet 100:641–657

    Article  Google Scholar 

  • Kazan K, Muehlbauer FJ, Weeden NF, Ladizinsky G (1993) Inheritance and linkage relationships of morphological and isozyme loci in chickpea (Cicer arietinum L.). Theor Appl Genet 86:417–426

    Article  CAS  Google Scholar 

  • Kosambi DD (1944) The estimation of map distance from recombination values. Annu Eugen 12:172–175

    Article  Google Scholar 

  • Lambrides CJ, Godwin ID, Lawn RJ, Imrie BC (2004) Segregation distortion for seed testa color in mungbean (Vigna radiata L. Wilcek). J Hered 95(6):532–535

    Article  PubMed  CAS  Google Scholar 

  • Li W, Lin Z, Zhang X (2007) A novel segregation distortion in intraspecific population of asian cotton (Gossypium arboretum L.) detected by molecular markers. J Genet Genomics 34(7):634–640

    Article  PubMed  CAS  Google Scholar 

  • Lorieux M, Perrier X, Goffinet B, Lanuad C, Gonzalez de Leon D (1995) Maximum-likelihood models for mapping genetic markers showing segregation distortion. 2. F2 populations. Theor Appl Genet 90:81–89

    Google Scholar 

  • Lu H, Romero-Severson J, Bernardo R (2002) Chromosomal regions associated with segregation distortion in maize. Theor Appl Genet 105:622–628

    Article  PubMed  CAS  Google Scholar 

  • Mano Y, Muraki M, Fujimori M, Takamizo T, Kindiger B (2005) AFLP-SSR maps of maize × teosinate and maize × maize: comparison of map length and segregation distortion. Plant Breed 124:432–439

    Article  CAS  Google Scholar 

  • Millán T, Rubio J, Iruela M, Daly K, Cubero JI, Gil J (2003) Markers associated with ascochyta blight resistance in chickpea and their potential in marker-assisted selection. Field Crops Res 84:373–384

    Article  Google Scholar 

  • Perfectti F, Pascual L (1996) Segregation distortion of isozyme loci in cherimoya (Annona cherimola Mill). Theor Appl Genet 93:440–446

    Article  CAS  Google Scholar 

  • Pham JL, Glaszmann JC, Sano R, Barbier P, Ghesquiére A, Second G (1990) Isozyme markers in rice: genetic analysis and linkage relationships. Genome 33:348–359

    Article  CAS  Google Scholar 

  • Radhika P, Gowda SJM, Kadoo NY, Mhase LB, Jamadagni M, Sainani MN, Chandran S, Gupta VS (2007) Development of an integrated intraspecific map of chickpea (Cicer arietinum L.) using two recombinant inbred line populations. Theor Appl Genet 115:209–216

    Article  PubMed  CAS  Google Scholar 

  • Rakshit S, Winter P, Tekeoglu M, Juarez Muñoz J, Pfaff T, Benko-Iseppon AM, Muehlbauer FJ, Kahl G (2003) DAF marker tightly linked to a major locus for ascochyta blight resistance in chickpea (Cicer arietinum L.). Euphytica 132:23–30

    Article  CAS  Google Scholar 

  • Santra DK, Tekeoglu M, Ratnaparkhe M, Kaiser WJ, Muehlbauer FJ (2000) Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea. Crop Sci 40:1606–1612

    Article  CAS  Google Scholar 

  • Sibov ST, de Souza CL, Garcia AAF et al (2003) Molecular mapping in tropical maize (Zea mays L.) using microsatellite markers. 1. Map construction and localization of loci showing distorted segregation. Hereditas 139:96–106

    Article  PubMed  Google Scholar 

  • Song XL, Sun XZ, Zhang TZ (2006) Segregation distortion and its effect on genetic mapping in plants. J Agric Biotechnol 14(2):286–292

    CAS  Google Scholar 

  • Taylor DR, Ingvarsson PK (2003) Common features of segregation distortion in plants and animals. Genetica 117:27–35

    Article  PubMed  CAS  Google Scholar 

  • Tekeoglu M, Rajesh PN, Muehlbauer FJ (2002) Integration of sequence tagged microsatellite sites to the chickpea genetic map. Theor Appl Genet 105:847–854

    Article  PubMed  CAS  Google Scholar 

  • Udupa SM, Baum M (2003) Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea (Cicer arietinum L.) using microsatellite markers. Theor Appl Genet 106:1196–1202

    PubMed  CAS  Google Scholar 

  • Van Ooijen JW (2006) JoinMap 4.0, software for the calculation of genetic linkage maps in experimental populations. Plant Research International, Wageningen, the Netherlands

    Google Scholar 

  • Winter P, Pfaff T, Udupa SM, Hüttel B, Sharma PC, Sahim S, Arreguin-Espinoza R, Weigand F, Muehlbauer FJ, Kahl G (1999) Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Mol Gen Genet 262:90–101

    Article  PubMed  CAS  Google Scholar 

  • Winter P, Benko-Iseppon AM, Hüttel B, Ratnaparkhe M, Tullu A, Sonnante G, Pfaff T, Tekeoglu M, Santra D, Sant VJ, Rajesh PN, Kahl G, Muehlbauer FJ (2000) A linkage map of the chickpea (Cicer arietinum L) genome based on recombinant inbred lines from a C. arietinum × C. reticulatum cross: localization of resistance gene for fusarium wilt races 4 and 5. Theor Appl Genet 101:1155–1163

    Article  CAS  Google Scholar 

  • Xu Y, Zhu L, Xiao J, Huang N, McCouch SR (1997) Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled-haploid and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet 253:535–545

    Article  PubMed  CAS  Google Scholar 

  • Yan JB, Tang H, Huang YQ, Zheng YL, Li JS (2003) Genetic analysis of segregation distortion of molecular markers in maize F2 population. Acta Genetica Sinica 10:913–918

    Google Scholar 

  • Zhang F, Wan XQ, Pan GT (2006) Genetic analysis of segregation distortion of molecular markers in maize F2 population. Acta Agronomica Sinica 32(9):1391–1396

    CAS  Google Scholar 

  • Zhao B, Deng QM, Zhang QJ, Li JQ, Ye SP, Liang YS, Peng Y, Li P (2006) Analysis of segregation distortion of molecular markers in F2 population of rice. Acta Genetica Sinica 33(5):449–457

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work has been supported by the project of the Spanish National Institute for Agricultural and Food Research and Technology (INIA, no. RTA2007-00030). P. Castro acknowledges grant support from INIA and the Andalusian Institute for Research and Training in Agriculture, Food and Fisheries (IFAPA, Spain).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P. Castro.

Additional information

An erratum to this article can be found at http://dx.doi.org/10.1007/s10681-011-0397-y

Rights and permissions

Reprints and permissions

About this article

Cite this article

Castro, P., Rubio, J., Cabrera, A. et al. A segregation distortion locus located on linkage group 4 of the chickpea genetic map. Euphytica 179, 515–523 (2011). https://doi.org/10.1007/s10681-011-0356-7

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10681-011-0356-7

Keywords

Navigation