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Transcription factors in plants and ABA dependent and independent abiotic stress signalling

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  • Published:
Biologia Plantarum

Abstract

Plants face variable environmental stresses that negatively affect plant growth and productivity. The multiplicity of responses is an important aspect of the complexity of stress signalling. Abscisic acid (ABA) is a broad-spectrum phytohormone involved not only in regulating stomatal opening, growth and development but also in coordinating various stress signal transduction pathways in plants during abiotic stresses. The both ABA-dependent and ABA-independent signal transduction pathways from stress signal perception to gene expression involve different transcription factors such as DREB, MYC/MYB, AREB/ABF, NAM, ATAF1,2, CUC and their corresponding cis-acting elements DRE, MYCRS/MYBRS, ABRE, NACRS. Genetic analysis of ABA mutants has given insight that ABA-dependent and ABA-independent pathways for osmotic stress and cold stress interact and converge. This review focuses on ABA-dependent and ABA-independent transcriptional components and cascades, their specificity and crosstalk in stress gene regulation.

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Abbreviations

ABA:

abscisic acid

ABF:

ABRE binding factor

AP2:

apetala 2

AREBs:

ABA responsive element binding protein

ATAF1,2:

Arabidopsis transcription factor 1 or 2 like family

CUC:

cup-shaped cotyledon

DREB2:

drought responsive element binding protein 2

ERF:

ethylene responsive factor

hos5 :

high expression of osmotic responsive genes

NAM:

no apical meristem

References

  • Abe, H., Yamaguchi-Shinozaki, K., Urao, T., Iwasaki, T., Hosokawa, D., Shinozaki K.: Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. — Plant Cell 9: 1859–1868, 1997.

    Article  PubMed  CAS  Google Scholar 

  • Abe, H., Urao, T., Ito, T., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. — Plant Cell 15: 63–78, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Agarwal, M., Hao, Y., Kapoor, A., Dong, C.H., Fuji, H., Zheng, X., Zhu, J.K.: A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance. — J. biol. Chem. 281: 37636–37645, 2006b.

    Article  PubMed  CAS  Google Scholar 

  • Agarwal, P., Agarwal, P.K., Nair, S., Sopory, S.K., Reddy, M.K.: Stress inducible DREB2A transcription factor from Pennisetum glaucum is a phosphoprotein and its phosphorylation negatively regulates its DNA binding activity. — Mol. gen. Genet. 277: 189–198, 2007.

    CAS  Google Scholar 

  • Agarwal, P.K., Agarwal, P., Reddy, M.K., Sopory, S.K.: Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. — Plant Cell Rep. 86: 1263–1274, 2006a.

    Article  CAS  Google Scholar 

  • Aguan, K., Sugawara, K., Suzuki, N., Kusano, T.: Low temperature- dependent expression of a rice gene encoding a protein with a leucine-zipper motif. — Mol. gen. Genet. 240: 1–8, 1993.

    Google Scholar 

  • Aida, M., Ishida, T., Fukaki, H., Fujisawa, H., Tasaka, M.: Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. — Plant Cell 9:841–857, 1997.

    Article  PubMed  CAS  Google Scholar 

  • Albrecht, V., Weinl, S., Blazevic, D., D’Angelo, C., Batistic, O., Kolukisaoglu, U., Bock, R., Schulz, B., Harter, K., Kudla, J.: The calcium sensor CBL1 integrates plant responses to abiotic stresses. — Plant J. 36: 457–470, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Brocard, I., Lynch, T., Finkelstein, R.: Regulation and role of the Arabidopsis ABA-insensitive (ABI) 5 gene in ABA, sugar and stress response. — Plant Physiol. 129: 1533–1543, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Catala, R., Santos, E., Alonso, J.M., Ecker, J.R., Martinez-Zapater, J.M., Salinas, J.: Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. — Plant Cell 15: 2940–2951, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Century, K., Reuber, T.L., Ratcliffe, O.J.: Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products. — Plant Physiol. 147: 20–29, 2008.

    Google Scholar 

  • Chen, H.H., Li, P.H., Brenner, M.L.: Involvement of abscisic acid in potato cold acclimation. — Plant Physiol. 71: 362–65, 1983.

    Article  PubMed  CAS  Google Scholar 

  • Chen, J.Q., Meng, X.P., Zhang, Y., Xia, M., Wang, X.P.: Over-expression of OsDREB genes lead to enhanced drought tolerance in rice. — Biotechnol. Lett. 30: 2191–2198, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Chen, M., Wang, Q.Y., Cheng, X.G., Xu, Z.S., Li, L.C., Ye, X.G., Xia, L.Q., Ma, Y.Z.: GmDREB2, a soybean DRE-binding transcription factor, conferred drought and high-salt tolerance in transgenic plants. — Biochem. biophys. Res. Commun. 353: 299–305, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B.H., Hong, X., Agarwal, M., Zhu, J.K.: ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. — Genes Dev. 17: 1043–1054, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Choi, D.W., Rodriguez, E.M., Close, T.J.: Barley Cbf3 gene identification, expression pattern, and map location. — Plant Physiol. 129: 1781–1787, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Choi, H., Hong, J., Ha, J., Kang, J., Kim, S.Y.: ABFs, a family of ABA responsive element binding factors. — J. biol. Chem. 21: 1723–1730, 2000.

    Article  Google Scholar 

  • Dai, X., Xu, Y., Ma, Q., Xu, W., Wang, T., Xue, Y., Chong, K.: Overexpression of an R1R2R3 MYB gene OsMYB3R-2, increases tolerance to freezing, drought, salt stress in transgenic Arabidopsis. — Plant Physiol. 143: 1739–1751, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Dinneny, J.R., Long, T.A., Wang, J.Y., Jung, J.W., Mace, D., Pointer, S., Barron, C., Brady, S.M., Schiefelbein, J., Benfey, P.N.: Cell identity mediates the response of Arabidopsis roots to abiotic stress. — Science 320: 942–945, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Dubouzet, J.G., Sakuma, Y., Ito, Y., Kasuga, M., Dubouzet, E.G., Miura, S., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. — Plant J. 33: 751–763, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Egawa, C., Kobayashi, F., Ishibashi, M., Nakamura, T., Nakamura, C., Takumi, S.: Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat. — Gene Genet. Syst. 81: 77–91, 2006.

    Article  CAS  Google Scholar 

  • Ernst, H.A., Olsen, A.N., Larsen, S., Lo., Leggio, L.: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. — EMBO Rep. 5: 297–303, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Finkelstein, R., Gampala, S.S.L., Lynch, T.J., Thomas, T.L., Rock, C.D.: Redundant and distinct functions of the ABA response loci ABAINSENSITIVE (ABI)5 and ABRE-BINDING FACTOR (ABF)3. — Plant mol. Biol. 59: 253–267, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Finkelstein, R., Lynch, T.: The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. — Plant Cell 12: 599–609, 2000.

    Article  PubMed  CAS  Google Scholar 

  • Finkelstein, R.R., Gampala, S.S.L., Rock, C.D.: Abscisic acid signaling in seeds and seedlings. — Plant Cell 14(Suppl.): S15–S45, 2002.

    PubMed  CAS  Google Scholar 

  • Fujita, M., Fujita, Y., Maruyama, K., Seki, M., Hiratsu, K., Ohme-Takagi, M., Tran, L.-S.P., Yamaguchi-Shinozaki, K., Shinozaki, K.: A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. — Plant J. 39: 863–876, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Fujita, Y., Fujita, M., Satoh, R., Maruyama, K., Parvez, M.M., Seki, M., Hiratsu, K., Ohme-Takagi, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: AREB1 Is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. — Plant Cell. 17: 3470–88, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Furihata, T., Maruyama, K., Fujita, Y., Umezawa, T., Yoshida, R., Shinozaki, K., Yamaguchi-Shinozaki, K.: Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. — Proc. nat. Acad. Sci. USA 103: 1988–1993, 2006.

    Article  PubMed  CAS  Google Scholar 

  • Gilmour, S.J., Sebolt, A.M., Salazar, M.P., Everard, J.D., Thomashow, M.F.: Overexpression of Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. — Plant Physiol. 124: 1854–1865, 2000.

    Google Scholar 

  • Gilmour, S.J., Zarka, D.G., Stockinger, E.J., Salazar, M.P., Houghton, J.M., Thomashow, M.F.: Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. — Plant J. 16: 433–442, 1998.

    Article  PubMed  CAS  Google Scholar 

  • Giuliano, G., Pichersky, E., Malik, V.S., Timko, M.P., Scolnik, P.A., Cashmore, A.R.: An evolutionary conserved protein binding sequence upstream of a plant light-regulated gene. — Proc. nat. Acad. Sci. USA 85: 7089–7093, 1988.

    Article  PubMed  CAS  Google Scholar 

  • Grill, E., Himmelbach, A.: ABA signal transduction. — Curr. Opin. Plant Biol. 1: 412–418, 1998.

    Article  PubMed  CAS  Google Scholar 

  • Goodrich, J., Carpenter, R., Coen, E.S.: A common gene regulates pigmentation pattern in diverse plant species. — Cell 68: 955–964, 1992.

    Article  PubMed  CAS  Google Scholar 

  • Guiltnan, M.J., Marcotte, W.R., Quatrano, R.S.: A plant. leucine zipper protein that recognizes an abscisic acid response element. — Science 250: 267–271, 1990.

    Article  Google Scholar 

  • Haake, V., Cook, D., Riechmann, J.L., Pineda, O., Thomashow, M.F., Zhang, J.Z.: Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. — Plant Physiol. 130: 639–648, 2002.

    Article  PubMed  CAS  Google Scholar 

  • He, X.-J., Mu, R.-L., Cao, W.-H., Zhang, Z.-G., Zhang, J.-S., Chen, S.-Y.: AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. — Plant J. 44: 903–916, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Hong, J.P., Kim, W.T.: Isolation and functional characterization of the Ca-DREBLP1 gene encoding a dehydration-responsive element binding-factor-like protein 1 in hot pepper (Capsicum annum L. cv. Pukang). — Planta 220: 875–888, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Hsieh, T.S., Lee, J.T., Yang, P.T., Chiu, L.H., Charng, Y.Y., Wang, Y.C., Chan, M.T.: Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. — Plant Physiol. 129: 1086–1094, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Hu, H., Dai, M., Yao, J., Xiao, B., Li, X., Zhang, Q., Xiong, L.: Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice. — Proc. nat. Acad. Sci. USA 35: 12987–12992, 2006.

    Article  CAS  Google Scholar 

  • Hu, H., You, J., Fang, Y., Zhu, X., Qi, Z., Xiong, L.: Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice. — Plant mol. Biol. 67: 169–181, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Ingram, J., Bartels, D.: The molecular basis of dehydration tolerance in plants. — Annu. Rev. Plant Physiol. Plant mol. Biol. 47: 377–403, 1996.

    Article  PubMed  CAS  Google Scholar 

  • Ishitani, M., Xiong, L., Stevenson, B., Zhu, J. K.: Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic aciddependent and abscisic acid-independent pathways. — Plant Cell 9: 1935–1949, 1997.

    Article  PubMed  CAS  Google Scholar 

  • Jaglo, K.R., Kleff, S., Amundsen, K.L., Zhang, X., Haake, V., Zhang, J.Z., Deits, T., Thomashow, M.F.: Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species. — Plant Physiol. 127: 910–917, 2001.

    Article  PubMed  CAS  Google Scholar 

  • Jakoby, M., Weisshaar, B., Droege-Laser, W., Vicente-Carbajosa, J., Tiedemann, J., Kroj, T., Parcy, F.: bZIP transcription factors in Arabidopsis. — Trends Plant Sci. 7: 106–111, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Kagaya, Y., Hobo, T., Murata, M., Ban, A., Hattori, T.: Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. — Plant Cell 14: 3177–3189, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Kang, J., Choi, H., Im, M., Kim, S.Y.: Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling. — Plant Cell 14: 343–357, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Kasuga, M., Miura, S., Shinozaki, K., Yamaguchi-Shinozaki, K.: A combination of the Arabidopsis DREB1A gene and stress-inducible rd29A promoter improved drought-and low-temperature stress tolerance in tobacco by gene transfer. — Plant Cell Physiol. 45: 346–350, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Kikuchi, K., Ueguchi-Tanaka, M., Yoshida, K.T., Nagato, Y., Matsusoka, M., Hirano, H.Y.: Molecular analysis of the NAC gene family in rice. — Mol. gen. Genet. 262: 1047–1051, 2000.

    Article  PubMed  CAS  Google Scholar 

  • Kim, S., Kang, J.Y., Cho, D.I., Park, J.H., Kim, S.Y.: ABF2, an ABRE-binding bZIP factor, is an essential component of glucose signaling and its overexpression affects multiple stress tolerance. — Plant J. 40: 75–87, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Kim, S.G., Kim, S.Y., Park, C.M.: A membrane-associated NAC transcription factor regulates salt-responsive flowering via FLOWERING LOCUS T in Arabidopsis. — Planta 226: 647–654, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Kim, S.G., Lee, A.K., Yoon, H.K., Park, C.M.: A membrane-bound NAC transcription factor NTL8 regulates gibberellic acid-mediated salt signaling in Arabidopsis seed germination. — Plant J. 55: 77–88, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Kiyosue, T., Yamaguchi-Shinozaki, K., Shinozaki, K.: Characterization of a cDNA for a dehydration-inducible gene that encodes a Clp A, B-like protein in Arabidopsis thaliana L. — Biochem. biophys. Res. Commun. 196: 1214–1220, 1993.

    Article  PubMed  CAS  Google Scholar 

  • Kiyosue, T., Yamaguchi-Shinozaki, K., Shinozaki, K.: Cloning of cDNAs for genes that are early-responsive to dehydration stress (ERDs) in Arabidopsis thaliana L.: identification of three ERDs as HSP cognate genes. — Plant mol. Biol. 25: 791–798, 1994.

    Article  PubMed  CAS  Google Scholar 

  • Kobayashi, Y., Murata, M., Minami, H., Yamamoto, S., Kagaya, Y., Hobo, T., Yamamoto, A., Hattori, T.: Abscisic acid-activated SNRK2 protein kinases function in the generegulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. — Plant J. 44: 939–949, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Kobayashi, F., Maeta, E., Terashima, A., Kawaura, K., Ogihara, Y., Takumi, S.: Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat. — J. exp. Bot. 59: 891–905, 2008a.

    Article  PubMed  CAS  Google Scholar 

  • Kobayashi, F., Ishibashi, M., Takumi, S.: Transcriptional activation of Cor/Lea genes and increase in abiotic stress tolerance through expression of a wheat DREB2 homolog in transgenic tobacco. — Transgenic Res. 17: 755–767, 2008b.

    Article  PubMed  CAS  Google Scholar 

  • Koornneef, M., Leon-Kloosterziel, K.M., Schwartz, S., Hand, Zeevart, J.A.D.: The genetic and molecular dissection of abscisic and biosynthesis and signal transduction in Arabidopsis. — Plant Physiol. Biochem. 36: 83–89, 1998.

    Article  CAS  Google Scholar 

  • Kume, S., Kobayashi, F., Ishibashi, M., Ohno, R., Nakamura, C., Takumi, S.: Differential and coordinated expression of Cbf and Cor/Lea genes during long-term cold acclimation in two wheat cultivars showing distinct levels of freezing tolerance. — Genes Genet. Syst. 80: 185–197, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Kusano, T., Berberich, T., Harada, M., Suzuki, N., Sugawara, K.: A maize DNA-binding factor with a bZIP motif is induced by low temperature. — Mol. Gen. Genet. 248: 507–517, 1995.

    Article  PubMed  CAS  Google Scholar 

  • Lang, V., Mantyla, E., Welin, B., Sundberg, B., Palva, E.T.: Alterations in water status, endogenous abscisic acid content, and expression of rab18 gene during the development of freezing tolerance in Arabidopsis thaliana. — Plant Physiol. 104: 1341–1349, 1994.

    PubMed  Google Scholar 

  • Leung, J., Merlot, S., Giraudat, J.: The Arabidopsis ABSCISIC ACID-INSENSITIVE2 (ABI2) and ABI1 genes encode homologous protein phosphatase 2C involved in abscisic acid signal transduction. — Plant Cell 9: 759–771, 1997.

    Article  PubMed  CAS  Google Scholar 

  • Li, X.P., Tian, A.G., Luo, G.Z., Gong, Z.Z., Zhang, J., Chen, S.Y.: Soybean DRE-binding transcription factors that are responsive to abiotic stresses. — Theor. Appl. Genet. 110: 1355–1362, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Liao, Y., Zhang, J.-S., Chen, S.-Y., Zhang, W.-K.: Role of soybean GmbZip132 under abscisic acid and salt stresses. — J. Int. Plant Biol. 50: 221–230, 2008b.

    Article  CAS  Google Scholar 

  • Liao, Y., Zou, H., Wei, W., Hao, Y.J., Tian, A.G., Huang, J., Liu, Y.-F., Zhang, J.-S., Chen, S.-Y.: Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. — Planta 228: 225–240, 2008a.

    Article  PubMed  CAS  Google Scholar 

  • Liao, Y., Zou, H.-F., Wang, H.-W., Zhang, W.-K., Ma, B., Zhang, J.-S.: Soybean GmMYB76, GmMYB92, and GmMYB177 genes confer stress tolerance in transgenic Arabidopsis plants. — Cell Res. 18: 1047–1060, 2008c.

    Article  PubMed  CAS  Google Scholar 

  • Liu, L., Zhu, K., Yang, Y., Wu, J., Chen, F., Yu, D.: Molecular cloning, expression profiling and trans-activation property studies of a DREB2-like gene from chrysanthemum (Dendranthema vestitum). — J. Plant Res. 121: 215–226, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Liu, Q., Kasuga, M., Sakumam Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., Shinozaki, K.: Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low- temperature-responsive gene expression, respectively, in Arabidopsis. — Plant Cell 10: 1391–1406, 1998.

    Article  PubMed  CAS  Google Scholar 

  • Liu, Z.-B., Ulmasov, T., Shi, X., Hagen, G., Guilfoyle, T.: Soybean GH3 promoter contains multiple auxin-inducible elements. — Plant Cell 6: 645–657, 1994.

    Article  PubMed  CAS  Google Scholar 

  • Lopez-Molina, L., Mongrand, S., Chua, N.-H.: A post germination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis. — Proc. nat. Acad. Sci. USA 98: 4782–4787, 2001.

    Article  PubMed  CAS  Google Scholar 

  • Lu, P.-L., Chen, N.-Z., An, R., Su, Z., Qi, B.-S., Ren, F., Chen, J., Wg, X.-C.: A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in Arabidopsis. — Plant mol. Biol. 63: 289–305, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Magome, H., Yamaguchi, S., Hanada, A., Kamiya, Y., Oda, K.: Dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor. — Plant J. 37: 720–729, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Mason, H.S., DeWald, D.B., Mullet, J.E.: Identification of a methyl jasmonate-responsive domain in soybean vspB promoter. — Plant Cell 5: 241–251, 1993.

    Article  PubMed  CAS  Google Scholar 

  • McKendree, W.L., Jr., Ferl, R.J.: Functional elements of the Arabidopsis Adh promoter include the G-box. — Plant mol. Biol. 19: 859–862, 1992.

    Article  PubMed  CAS  Google Scholar 

  • Medina, J., Bargues, M., Terol, J., Pérez-Alonso, M., Salinas, J.: The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration. — Plant Physiol. 119: 463–469, 1999.

    Article  PubMed  CAS  Google Scholar 

  • Merlot, S., Costi, F., Guerrier, D., Vavasseur, A., Giraudat, J.: The ABI1 and ABI2 protein phosphatases 2C act in a negative feedback regulatory loop of the abscisic acid signaling pathway. — Plant J. 25: 295–303, 2001.

    Article  PubMed  CAS  Google Scholar 

  • Mundy, J., Yamaguchi-Shinozaki, K., Chua, N.: Nuclear proteins bind conserved elements in the abscisic acidresponsive promoter of a rice rab gene. — Proc. nat. Acad. Sci. USA 87: 1406–1410, 1990.

    Article  PubMed  CAS  Google Scholar 

  • Nakashima, K., Kiyosue, T., Yamaguchi-Shinozaki, K., Shinozaki, K.: A nuclear gene, erd1, encoding a chloroplast targeted Clp protease regulatory subunit homolog is not only induced by water stress but also developmentally upregulated during senescence in Arabidopsis thaliana. — Plant J. 12: 851–861, 1997.

    Article  PubMed  CAS  Google Scholar 

  • Nakashima, K., Tran, L.-S.P., Nguyen, D.V., Fujita, M., Maruyama, K., Todaka, D., Ito, Y., Hayashi, N., Shinozaki, K., Yamaguchi-Shinozaki, K.: Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice. — Plant J. 51: 617–630, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Narusaka, Y., Nakashima, K., Shinwari, Z.K., Sakuma, Y., Furihata, T., Abe, H., Narusaka, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. — Plant J. 34: 137–148, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Nogueira, F.T.S., Schlögl P.S., Camargo, S.R., Fernandez, J.H., De Rosa, Jr., V.E., Pompermayer, P., Arruda, P.: SsNAC23, a member of the NAC domain protein family, is associated with cold, herbivory and water stress in sugarcane. — Plant Sci. 169: 93–106, 2005.

    Article  CAS  Google Scholar 

  • Novillo, F., Alonso, J.M., Ecker, J.R., Salinas, J.: CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. — Proc. nat. Acad. Sci. USA 101: 3985–3990, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Ohnishi, T., Sugahara, S., Yamada, T., Kikuchi, K., Yoshiba, Y., Hirano, H.Y., Tsutsumi, N.: OsNAC6, a member of the NAC gene family, is induced by various stresses in rice. — Genes Genet. Syst. 80: 135–139, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Olsen, A.N., Ernst, H.A., Lo Leggio, L., Skriver, K.: DNA-binding specificity and molecular functions of NAC transcription factors. — Plant Sci. 169: 785–797, 2005.

    Article  CAS  Google Scholar 

  • Ooka, H., Satoh, K., Doi, K., Nagata, T., Otomo, Y., Murakami, K., Matsubara, K., Osato, N., Kawai, J., Carninci, P., Hayashizaki, Y., Suzuki, K., Kojima, K., Takahara, Y., Yamamoto, K., Kikuchi, S.: Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. — DNA Res. 10: 239–247, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Pasquali, G., Biricolti, S., Locatelli, F., Baldoni, E., Mattana, M.: Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples. — Plant Cell Rep. 27: 1677–1686, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Pastori, G.M., Foyer, C.H.: Common component networks, and pathways of cross-tolerance to stress. The control of ‘redox’ an abscisic acid-mediated controls. — Plant Physiol. 129: 460–468, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Pospíšilová, J., Synková, H., Haisel, D. Baťková, P.: Effect of abscisic acid on photosynthetic parameters during ex vitro transfer of micropropagated tobacco plantlets. — Biol. Plant. 53: 11–20, 2009.

    Article  CAS  Google Scholar 

  • Qin, F., Kakimoto, M., Sakuma, Y., Maruyama, K., Osakabe, Y., Tran, L.-S.P., Shinozaki, K., Yamaguchi-Shinozaki, K.: Regulation and functional analysis of ZmDREB2A in response to drought and heat stresses in Zea mays L. — Plant J. 50: 54–69, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Qin, X.-F., Holuigue, L., Horvath, D.M., Chua, N.H.: Immediate early transcription activation by salicylic acid via the cauliflower mosaic virus as-1 element. — Plant Cell 6: 863–874, 1994.

    Article  PubMed  CAS  Google Scholar 

  • Romero, I., Fuertes, A., Benito, M.J., Malpical, J.M., Leyva, A., Paz-Ares, J.: More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. — Plant J. 14: 273–284, 1998.

    Article  PubMed  CAS  Google Scholar 

  • Ruggiero, B., Koiwa, H., Manabe, Y., Quist, T.M., Inan, G., Saccardo, F., Joly, R.J., Hasegawa, P.M., Bressan, R.A., Maggio, A.: Uncoupling the effects of ABA on plant growth and water relations: analysis of sto1/nced3, BA deficient salt stress tolerant mutant in Arabidopsis thaliana. — Plant Physiol. 136: 3134–3147, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Sakuma, Y., Maruyama, K., Osakabe, Y., Qin, F., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. — Plant Cell 18: 1292–1309, 2006a.

    Article  PubMed  CAS  Google Scholar 

  • Sakuma, Y., Maruyama, K., Qin, F., Osakabe, Y., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. — Proc. nat. Acad. Sci. USA 103: 18828–18833, 2006b.

    Article  CAS  Google Scholar 

  • Savitch, L.V., Allard, G., Seki, M., Robert, L.S., Tinker, N.A., Huner, N.P.A., Shinozaki, K., Singh, J.: The effect of overexpression of two Brassica CBF/DREB1-like transcription factors on photosynthetic capacity and freezing tolerance in Brassica napus. — Plant Cell Physiol. 46: 1525–1539, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Saxena, S.N., Kaushik, N., Sharma, R.: Effect of abscisic acid and proline on in vitro flowering in Vigna aconitifolia. — Biol. Plant. 52: 181–183, 2008.

    Article  CAS  Google Scholar 

  • Schramm, F., Larkindale, J., Kiehlmann, E., Ganguli, A., Englich, G., Vierling, E., Von Koskull-Döring, P.: A cascade of transcription factor DREB2A and heat stress transcription factor HsfA3 regulates the heat stress response of Arabidopsis. — Plant J. 53: 264–274, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamaguchi-Shinozaki, K., Carninci, P., Hayashizaki, Y., Shinozaki, K.: Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. — Plant Cell 13: 61–72, 2001.

    Article  PubMed  CAS  Google Scholar 

  • Shen, Q., Ho, T.-H.D.: Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing a G-box and a novel cis-acting element. — Plant Cell 7: 295–307, 1995.

    Article  PubMed  CAS  Google Scholar 

  • Shen, Y.G., Zhang, W.K., He, S.J., Zhang, J.S., Liu, Q., Chen, S.Y.: An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress. — Theor. appl. Genet. 106: 923–930, 2003b.

    PubMed  CAS  Google Scholar 

  • Shen, Y.G., Zhang, W.K., Yan, D.Q., Du, B.X., Zhang, J.S., Liu, Q., Chen, S.Y.: Characterization of a DRE-binding transcription factor from a halophyte Atriplex hortensis. — Theor. appl. Genet. 107: 155–161, 2003a.

    PubMed  CAS  Google Scholar 

  • Shinozaki, K., Yamaguchi-Shinozaki, K.: Molecular responses to dehydration and low temperature: differences and crosstalk between two stress signaling pathways. — Curr. Opin. Plant Biol. 3: 217–223, 2000.

    PubMed  CAS  Google Scholar 

  • Simpson, S.D., Nakashima, K., Narusaka, Y., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene, function in induction by dehydration stress and dark-induced senescence. — Plant J. 33: 259–270, 2003.

    Article  PubMed  CAS  Google Scholar 

  • Souer, E., Van Houwelingen, A., Kloos, D., Mol, J., Koes, R.: The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordial boundaries. — Cell 85: 159–170, 1996.

    Article  PubMed  CAS  Google Scholar 

  • Sreenivasulu, N., Radchuk, V., Strickert, M., Miersch, O., Weschke, W., Wobus, U.: Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA regulated maturation in developing barley seeds. — Plant J. 47: 310–327, 2006.

    Article  PubMed  CAS  Google Scholar 

  • Tanimoto, S., Miyazaki, A., Harada, H.: Regulation by abscisic acid of in vitro flower formation in Torenia stem segments. — Plant Cell Physiol. 26: 675–682, 1985.

    CAS  Google Scholar 

  • Thomashow, M.F.: Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. — Ann. Rev. Plant Physiol. Plant mol. Biol. 50: 571–599, 1999.

    Article  CAS  Google Scholar 

  • Tran, L.-S.P., Nakashima, K., Sakuma, Y., Osakabe, Y., Qin, F., Simpson, S.D., Maruyama, K., Fujita, Y., Shinozaki, K., Yamaguchi-Shinozaki, K.: Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis. — Plant J. 49: 46–63, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Tran, L.-S.P., Nakashima, K., Sakuma, Y., Simpson, S.D., Fujita, Y., Maruyama, K., Fujita, M., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. — Plant Cell 16: 2481–2498, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Uno, Y., Furihata, T., Abe, H., Yoshida, R., Shinozaki, K., Yamaguchi-Shinozaki, K.: Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions. — Proc. nat. Acad. Sci. USA. 97: 11632–11637, 2000.

    Article  PubMed  CAS  Google Scholar 

  • Vannini, C., Locatelli, F., Bracale, M., Magnani, E., Marsoni, M., Osnato, M., Mattana, M., Baldoni, E., Coraggio, I.: Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants. — Plant J. 37: 115–127, 2004.

    Article  PubMed  CAS  Google Scholar 

  • Vannini, M., Campa, M., Iriti, M, Genga, A., Faoro, F., Carravieri, S., Rotino, G.L., Rossoni, M., Spinardi, A., Bracale, M.: Evaluation of transgenic tomato plants ectopically expressing the rice Osmyb4 gene. — Plant Sci. 173: 231–239, 2007.

    Article  CAS  Google Scholar 

  • Verslues, P.E., Zhu, J.K.: Before and beyond ABA: upstream sensing and internal signals that determine ABA accumulation and response under abiotic stress. — Biochem. Soc. Trans. 33: 375–379, 2005.

    Article  PubMed  CAS  Google Scholar 

  • Wang, Q., Guan, Y., Wu, Y., Chen, H., Chen, F., Chu, C.: Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. — Plant mol. Biol. 67: 589–602, 2008.

    Article  PubMed  CAS  Google Scholar 

  • Xiong, Y., Fei, S.-Z.: Functional and phylogenetic analysis of a DREB/CBF-like gene in perennial ryegrass (Lolium perenne L.). — Planta 224: 878–888, 2006.

    Article  PubMed  CAS  Google Scholar 

  • Xiong, L., Ishitani, M., Lee, H., Zhu, J.-K.: HOS5-a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana. — Plant J. 19: 569–578, 1999a.

    Article  PubMed  CAS  Google Scholar 

  • Xiong, L., Ishitani, M., Lee, H., Zhu, J.-K.: The Arabidopsis LOS5/ABA3 locus encodes a molybdenum cofactor sulfurase and modulates cold stress- and osmotic stress-responsive gene expression. — Plant Cell 13: 2063–2083, 2001.

    Article  PubMed  CAS  Google Scholar 

  • Xiong, L., Ishitani, M., Zhu, J.K.: Interaction of osmotic stress, temperature, and abscisic acid in the regulation of gene expression in Arabidopsis. — Plant Physiol. 119: 205–211, 1999b.

    Article  PubMed  CAS  Google Scholar 

  • Xiong, L., Lee, B.-H., Ishitani, M., Zhu, J.-K.: Regulation of osmotic stress responsive gene expression by LOS6/ABA1 locus in Arabidopsis. — J. biol. Chem. 277: 8588–8596, 2002.

    Article  PubMed  CAS  Google Scholar 

  • Yamaguchi-Shinozaki, K., Shinozaki, K.: The plant hormone abscisic acid mediates the drought-induced expression but not the seed-specific expression of rd22, a gene responsive to dehydration stress in Arabidopsis thaliana. — Mol. gen. Genet. 238: 17–25, 1993.

    PubMed  CAS  Google Scholar 

  • Yamaguchi-Shinozaki, K., Shinozaki, K.: A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. — Plant Cell 6: 251–264, 1994.

    Article  PubMed  CAS  Google Scholar 

  • Yang, Y., Wu, J., Zhu, K., Liu, L., Chen, F., Yu, D.: Identification and characterization of two chrysanthemum (Dendronthema × morifolium) DREB genes, belonging to the AP2/EREBP family. — Mol. biol. Rep. 36: 71–81, 2009.

    Article  PubMed  CAS  Google Scholar 

  • Zhao, J., Ren, W., Zhi, D., Wang, L., Xia, G.: Arabidopsis DREB1A/CBF3 bestowed transgenic tall fescue increased tolerance to drought stress. — Plant Cell Rep. 26: 1521–1528, 2007.

    Article  PubMed  CAS  Google Scholar 

  • Zhao, T.J., Sun, S., Liu, Y., Liu, J.M., Liu, Q., Yan, Y.B., Zhou, H.M.: Regulating the drought-responsive element (DRE)-mediated signaling pathway by synergic functions of transactive and trans-inactive DRE binding factors in Brassica napus. — J. biol. Chem. 281: 10752–10759, 2006.

    Article  PubMed  CAS  Google Scholar 

  • Zhou, B., Guo, Z.: Calcium is involved in the abscisic acidinduced ascorbate peroxidase, superoxide dismutase and chilling resistance in Stylosanthes guianensis. — Biol. Plant. 53: 63–68, 2009.

    Article  CAS  Google Scholar 

  • Zou, M., Guan, Y., Ren, H., Zhang, F., Chen, F.: A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. — Plant. mol. Biol. 66: 675–83, 2008.

    Article  PubMed  CAS  Google Scholar 

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The financial assistance from the Council of Scientific and Industrial Research (CSIR) and Department of Science and Technology, New Delhi, India is duly acknowledged.

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Agarwal, P.K., Jha, B. Transcription factors in plants and ABA dependent and independent abiotic stress signalling. Biol Plant 54, 201–212 (2010). https://doi.org/10.1007/s10535-010-0038-7

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