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Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley

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Abstract

Segregation distortion can negatively impact on gains expected using selection. In order to increase our understanding of genetic factors that may influence the extent and direction of segregation distortion, segregation distortion analyses were conducted in four different doubled haploid (DH) populations. A high-density composite map of barley was then constructed by integrating information from the four populations. The composite map contained 2,111 unique loci, comprising RFLP, SSR and DArT markers and spanned 1,136 cM. In the four populations investigated, the proportion of markers with segregation distortion ranged from 15 to 38%, depending on the population. The highest distortion was observed in populations derived by the microspore culture technique. Distorted loci tended to be clustered, which allowed definition of segregation distortion regions (SDRs). A total of 14 SDRs were identified in the 4 populations. Using the high-density composite map, several SDRs were shown to have consistent map locations in two or more populations; one SDR on chromosome 1H was present in all four populations. The analysis of haplotypes underlying seven SDRs indicated that in three cases the under-represented haplotypes were common across populations, but for four SDRs the under-represented haplotypes varied across populations. Six of the seven centromeric regions harboured SDRs suggesting that genetic processes related to position near a centromere caused the segregation distortion in these SDRs. Other SDRs were most likely due to the methods used to produce the DH populations. The association of the SDRs identified in this study and some of the genes involved in the process of haploid production described in other studies were compared. The composite map constructed in this study provides an additional resource for the barley community via increased genome coverage and the provision of additional marker options. It has also enabled further insights into mechanisms that underpin segregation distortion.

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Acknowledgments

We thank the Australian Grains Research and Development Corporation (GRDC) for funding the project through the Australia China Collaboration on Barley Genetic Resources (Project UT8). We acknowledge Professor Peter Langridge from the University of Adelaide for providing the SSR data for Clipper/Sahara. We also thank Professor Andris Kleinhofs from Washington State University for providing RFLP data for Steptoe/Morex. We thank the reviewers for their useful comments on this manuscript.

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Authors and Affiliations

  1. Tasmanian Institute of Agricultural Research and School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, TAS, 7001, Australia

    Haobing Li & Neville Mendham

  2. Diversity Arrays Technology Pty Limited, PO Box 7141, Yarralumla, ACT, 2600, Australia

    Andrzej Kilian, Peter Wenzl & Eric Huttner

  3. Tasmanian Institute of Agricultural Research and School of Agricultural Science, University of Tasmania, PO Box 46, Kings Meadows, TAS, 7249, Australia

    Meixue Zhou

  4. CSIRO Plant Industry, Queensland Bioscience Precinct, 306 Carmody Road, St Lucia, QLD, 4067, Australia

    Haobing Li & Lynne McIntyre

  5. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, TAS, 7001, Australia

    René E. Vaillancourt

Authors
  1. Haobing Li
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  2. Andrzej Kilian
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  3. Meixue Zhou
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  4. Peter Wenzl
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  5. Eric Huttner
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  6. Neville Mendham
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  7. Lynne McIntyre
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  8. René E. Vaillancourt
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Corresponding author

Correspondence to Haobing Li.

Additional information

Communicated by R. Waugh.

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Li, H., Kilian, A., Zhou, M. et al. Construction of a high-density composite map and comparative mapping of segregation distortion regions in barley. Mol Genet Genomics 284, 319–331 (2010). https://doi.org/10.1007/s00438-010-0570-3

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  • DOI: https://doi.org/10.1007/s00438-010-0570-3

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