Collection
Genomics Tools, Approaches and Knowledge for Achieving Zero Hunger
- Submission status
- Closed
The global human population is expected to increase from 6.7 billion to 9 billion by the year 2050. To meet the growing food demands, word agricultural production is necessary to raise by 50% by 2030. The cultivable land is limited d is continuously being lost to urbanization, salinization, desertification, and environmental degradation therefore, relying to reclaim undeveloped land for agricultural purposes is less useful. Keeping in view, we can make genetic improvement of agricultural crops to adapt better under increasing temperatures, drought and flooding, rising salinity, and changing pathogen and insect threats under global climate change conditions. Under such circumstances, there is utmost requirement to unlock the repository of genetic basis and extensive utilization of germplasm to develop “Climate Resilient Cultivars” through the application of genomics based tools, approaches and novel knowledge based on break through research from the past few decades.
It’s noteworthy that modern molecular breeding techniques and other emerging plant breeding based technologies have contributed considerably for food and nutritional security. Therefore, novel plant breeding techniques (NPBTs) are urgently needed to enable sustainable agriculture; including new strategies to develop varieties and crops that have high yield potential, high yield stability, and superior grain quality and nutrition; nevertheless, less consumption of water, fertilizer, and chemicals should also be considered for environmental protection. Recently, OMICs, genome-wide association study (GWAS) and genome editing approaches have proven themselves as powerful tools that we have at our disposal to overcome substantial obstacles in the way of efficiency and productivity of current agricultural practices. The convergence of OMICs based techniques and GWAS has provided with high-quality genomes, re-sequencing data from thousands of genotypes, extensive transcriptome sequencing, development of haplotype map and web-based functional databases accelerated the identification of genes underlying important attributes relevant to food production and quality. In addition, genome editing techniques (CRISPR/Cas9 (Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-associated systems), CRISPR/Cas12a (Cpf1, CRISPR from Prevotella and Francisella 1), and Cas9-derived DNA base editors and prime editors), provide an unprecedented advancement in genome engineering due to precise DNA manipulation. The objective of compilation is to highlight the development and adoption of novel cutting edge techniques in plant sciences and to further enhance the understating for OMICs, GWAS and genome editing along with recent developments for regulatory measures for genome edit crops.
In this Research Topic, we will focus on the recent advances made in the development of novel tools and techniques used for the development of traits of interest in domesticated crops especially cereals helping to achieve zero hunger. Moreover, the advancements in CRISPR techniques and their applications in crop improvement programs and functional genomics studies.
Keywords: QTL mapping; CRISPR/Cas9; Multi-omics; SNPs; Genomic databases; Nanotechnology; Stress Breeding; Precision breeding; Crop Improvement.
Scope of the Research Topic:
• Recent trends in plant breeding approaches • Marker assisted selection • Crop domestication • Modern techniques for crop improvement • QTL mapping for various plant traits • Recent trends in genetics and genomics of crop plants • Hybrid seed production via classical and modern techniques • Speed Breeding • Genomic selection • Breeding approaches for root traits improvement • Identification and characterization of genes controlling biotic and abiotic stresses in crops • Genome wide association mapping for genes controlling economically important traits • CRISPR/Cas system for crop improvement • Recent developments in CRISPR/Cas system and their application
Editors
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Sajid Fiaz, PhD, University of Haripur, Haripur, Pakistan
Department of Plant Breeding and Genetics, The University of Haripur 22620, Pakistan Email: sfiaz@uoh.edu.pk
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Kotb Attia, PhD, King Saud University, Riyadh, Saudi Arabia
Department of Biochemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia Email: kattia1.c@ksu.edu.sa
Articles (27 in this collection)
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Genome-wide association studies: an intuitive solution for SNP identification and gene mapping in trees
Authors (first, second and last of 9)
- M. N. Ashwath
- Shivaji Ajinath Lavale
- Shabir Hussain Wani
- Content type: Review
- Published: 12 September 2023
- Article: 297
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The Germin-like protein gene OsGER4 is involved in heat stress response in rice root development
Authors (first, second and last of 5)
- Trang Thi Nguyen
- Dan The Pham
- Huong Thi Mai To
- Content type: Correspondence
- Published: 10 August 2023
- Article: 271
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Fantastic genes: where and how to find them? Exploiting rice genetic resources for the improvement of yield, tolerance, and resistance to a wide array of stresses in rice
Authors
- Vincent Pamugas Reyes
- Content type: Review
- Published: 13 July 2023
- Article: 238
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Smart reprogramming of jujube germplasm against salinity tolerance through molecular tools
Authors (first, second and last of 4)
- Meryam Manzoor
- Safina Naz
- Riaz Ahmad
- Content type: Correspondence
- Published: 04 July 2023
- Article: 222
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Molecular and genetic insights into secondary metabolic regulation underlying insect-pest resistance in legumes
Authors (first, second and last of 12)
- Muhammad Khuram Razzaq
- Aiman Hina
- Javaid Akhter Bhat
- Content type: Review
- Published: 01 July 2023
- Article: 217
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The potentialities of omics resources for millet improvement
Authors (first, second and last of 7)
- Banshidhar
- Saurabh Pandey
- Satish Kumar Singh
- Content type: Review
- Published: 24 June 2023
- Article: 210
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Novel chromosomes and genomes provide new insights into evolution and adaptation of the whole genome duplicated yeast-like fungus TN3-1 isolated from natural honey
Authors (first, second and last of 5)
- Shu-Lei Jia
- Mei Zhang
- Zhe Chi
- Content type: Original Article
- Published: 19 June 2023
- Article: 206
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Genome-wide identification and expression analysis of terpene synthases in Gossypium species in response to gossypol biosynthesis
Authors (first, second and last of 11)
- Teame Gereziher Mehari
- Hui Fang
- Baohua Wang
- Content type: Original Article
- Published: 04 June 2023
- Article: 197
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Comparative transcriptome profiling of near isogenic lines PBW343 and FLW29 to unravel defense related genes and pathways contributing to stripe rust resistance in wheat
Authors (first, second and last of 18)
- Zahoor Ahmad Mir
- Divya Chauhan
- Sundeep Kumar
- Content type: Original Article
- Published: 20 May 2023
- Article: 169
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The changing landscape of agriculture: role of precision breeding in developing smart crops
Authors (first, second and last of 7)
- Amna Chaudhry
- Ahtsham Ul Hassan
- Nader R. Abdelsalam
- Content type: Review
- Published: 19 May 2023
- Article: 167
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Genome-wide association study reveals useful QTL and genes controlling the fatty acid composition in rice bran oil using Vietnamese rice landraces
Authors (first, second and last of 4)
- Nga T. P. Mai
- Linh Thi Thuy Nguyen
- Huong Thi Mai To
- Content type: Correspondence
- Published: 09 May 2023
- Article: 150
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Insights to Gossypium defense response against Verticillium dahliae: the Cotton Cancer
Authors (first, second and last of 13)
- Muhammad Jawad Umer
- Jie Zheng
- Baohong Zhang
- Content type: Review
- Published: 01 May 2023
- Article: 142
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RNA sequencing in Artemisia annua L explored the genetic and metabolic responses to hardly soluble aluminum phosphate treatment
Authors (first, second and last of 15)
- Lingyun Wan
- Qiulan Huang
- Ahmed H. El-Sappah
- Content type: Original Article
- Published: 29 April 2023
- Article: 141
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OsMBTB32, a MATH-BTB domain-containing protein that interacts with OsCUL1s to regulate salt tolerance in rice
Authors (first, second and last of 8)
- Uzair Ullah
- Wenli Mao
- Abdullah Shalmani
- Content type: Original Article
- Published: 28 April 2023
- Article: 139
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The causal role of intestinal microbiome in development of pre-eclampsia
Authors (first, second and last of 4)
- Zhihui Xiong
- Qingmin Wang
- Zheng Zhu
- Content type: Original Article
- Open Access
- Published: 17 April 2023
- Article: 127
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An overview of genome engineering in plants, including its scope, technologies, progress and grand challenges
Authors (first, second and last of 12)
- Muhammad Sufyan
- Umar Daraz
- Iftikhar Ali
- Content type: Review
- Published: 06 April 2023
- Article: 119
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Functional differentiation of the ovine preadipocytes —insights from gene expression profiling
Authors (first, second and last of 9)
- Zhiyun Hao
- Xiayang Jin
- Mingna Li
- Content type: Original Article
- Published: 23 March 2023
- Article: 97
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Synergistic soil-less medium for enhanced yield of crops: a step towards incorporating genomic tools for attaining net zero hunger
Authors (first, second and last of 9)
- Nitika Thakur
- Mohit Nigam
- Hosam O. Elansary
- Content type: Original Article
- Published: 17 March 2023
- Article: 86
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Role of phosphoenolpyruvate carboxykinase 1 (pck1) in mediating nutrient metabolism in zebrafish
Authors (first, second and last of 5)
- Ke Lu
- Jiaqi Wu
- Xu-Fang Liang
- Content type: Original Article
- Published: 25 February 2023
- Article: 67
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CRISPR/Cas9 editing of wheat Ppd-1 gene homoeologs alters spike architecture and grain morphometric traits
Authors (first, second and last of 6)
- Aliya Errum
- Nazia Rehman
- Muhammad Ramzan Khan
- Content type: Original Article
- Published: 25 February 2023
- Article: 66
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Screening Indels from the whole genome to identify the candidates and their association with economic traits in several goat breeds
Authors
- Ahmed A. Saleh
- Lei Xue
- Yongju Zhao
- Content type: Original Article
- Published: 09 February 2023
- Article: 58
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Host-mediated gene engineering and microbiome-based technology optimization for sustainable agriculture and environment
Authors (first, second and last of 10)
- Nitika Thakur
- Mohit Nigam
- Sher Aslam Khan
- Content type: Review
- Published: 08 February 2023
- Article: 57
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Genome-wide characterization leading to simple sequence repeat (SSR) markers development in Shorea robusta
Authors (first, second and last of 6)
- Garima Mishra
- Rajendra K. Meena
- Maneesh S. Bhandari
- Content type: Data Note
- Published: 28 January 2023
- Article: 51
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Effect of salinity on ccmfn gene RNA editing of mitochondria in wild barley and uncommon types of RNA editing
Authors (first, second and last of 5)
- Ahmed Ramadan
- Afnan A. Alnufaei
- Sabah M. Hassan
- Content type: Original Article
- Published: 27 January 2023
- Article: 50
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Integrated omic techniques and their genomic features for invasive weeds
Authors (first, second and last of 9)
- Ping Huang
- Rashida Hameed
- Daolin Du
- Content type: Review
- Published: 21 January 2023
- Article: 44
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Genome-wide identification of the CER1 gene family in apple and response of MdCER1-1 to drought stress
Authors (first, second and last of 6)
- Yanlong Gao
- Zhongxing Zhang
- Yanxiu Wang
- Content type: Original Article
- Published: 23 December 2022
- Article: 17