Abstract
Offshore oil-producing platforms are designed for efficient and cost-effective separation of oil from water. However, design features and operating practices may create conditions that promote the proliferation and spread of biocorrosive microorganisms. The microbial communities and their potential for metal corrosion were characterized for three oil production platforms that varied in their oil-water separation processes, fluid recycling practices, and history of microbially influenced corrosion (MIC). Microbial diversity was evaluated by 16S rRNA gene sequencing, and numbers of total bacteria, archaea, and sulfate-reducing bacteria (SRB) were estimated by qPCR. The rates of 35S sulfate reduction assay (SRA) were measured as a proxy for metal biocorrosion potential. A variety of microorganisms common to oil production facilities were found, but distinct communities were associated with the design of the platform and varied with different locations in the processing stream. Stagnant, lower temperature (<37 °C) sites in all platforms had more SRB and higher SRA compared to samples from sites with higher temperatures and flow rates. However, high (5 mmol L−1) levels of hydrogen sulfide and high numbers (107 mL−1) of SRB were found in only one platform. This platform alone contained large separation tanks with long retention times and recycled fluids from stagnant sites to the beginning of the oil separation train, thus promoting distribution of biocorrosive microorganisms. These findings tell us that tracking microbial sulfate-reducing activity and community composition on off-shore oil production platforms can be used to identify operational practices that inadvertently promote the proliferation, distribution, and activity of biocorrosive microorganisms.
Similar content being viewed by others
References
Alain K, Pignet P, Zbinden M, Quillevere M, Duchiron F, Donval JP, Lesongeur F, Raguenes G, Crassous P, Querellou J, Cambon-Bonavita MA (2002) Caminicella sporogenes gen. nov., sp. nov., a novel thermophilic spore-forming bacterium isolated from an East-Pacific Rise hydrothermal vent. Int J Syst Evol Microbiol 52:1621–1628. doi:10.1099/00207713-52-5-1621
Audiffrin C, Cayol JL, Joulian C, Casalot L, Thomas P, Garcia JL, Ollivier B (2003) Desulfonauticus submarinus gen. nov., sp. nov., a novel sulfate-reducing bacterium isolated from a deepsea hydrothermal vent. Int J Syst Evol Microbiol 53:1585–1590. doi:10.1099/ijs.0.02551-0
Bauer M, Kube M, Teeling H, Richter M, Lombardot T, Allers E, Würdemann CA, Quast C, Kuhl H, Knaust F, Woebken D, Bischof K, Mussmann M, Choudhuri JV, Meyer F, Reinhardt R, Amann RI, Glöckner FO (2006) Whole genome analysis of the marine Bacteroidetes ‘Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter. Environ Microbiol 8:2201–2213. doi:10.1111/j.1462-2920.2006.01152.x
Ben-Dov E, Brenner A, Kushmaro A (2007) Quantification of sulfate-reducing bacteria in industrial wastewater, by real-time polymerase chain reaction (PCR) using dsrA and apsA genes. Microb Ecol 54:439–451. doi:10.1007/s00248-007-9233-2
Birkeland NK (2004) The microbial diversity of deep subsurface oil reservoirs. In: R. Vazquez-Duhalt R, Quintero-Ramirez R (eds) Studies in surface science and catalysis. Elsevier, Vol. 151 pp 385–403 doi:10.1016/S0167-2991(04)80155-1
Birkeland N-K (2005) Sulfate-reducing bacteria and archaea. In: Ollivier B, Magot M (eds) Petroleum microbiology. ASM Press, Washington, D.C., pp 35–54
Bradley GJ, McGinley HR, Hermsen NL (2011) A global perspective on biocides regulatory issues. OTC 21806. Offshore Tech Conference, Houston, TX, USA, 2–5 May 2011
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R (2010a) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26:266–267. doi:10.1093/bioinformatics/btp636
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsuenenko T, Zaneveld J, Knight R (2010b) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335–336. doi:10.1038/nmeth.f.303
Cayol J-L, Ollivier B, Lawson Anani Soh A, Fardeau M-L, Ageron E, Grimont PAD, Prensier G, Guezennec J, Magot M, Garcia J-L (1994) Haloincola saccharolytica subsp. senegalensis subsp. nov., isolated from the sediments of a hypersaline lake, and emended description of Haloincola saccharolytica. Int J Syst Bacteriol 44:805–811
Chilingar, George V. Mourhatch, Ryan Al-Qahtani, Ghazi D (2008) Fundamentals of corrosion and scaling—for petroleum and environmental engineers. Gulf Publishing Company. Online version available at:http://app.knovel.com/hotlink/toc/id:kpFCSFPEE3/fundamentals-corrosion/fundamentals-corrosion
Cluff MA, Hartsock A, MacRae JD, Carter K, Mouser PJ (2014) Temporal changes in microbial ecology and geochemistry in produced water from hydraulically fractured Marcellus shale gas wells. Environ Sci Technol 48:6508–6517. doi:10.1021/es501173p
Dalsgaard T, Bak F (1994) Nitrate reduction in a sulfate-reducing bacterium, Desulfovibrio desulfuricans, isolated from rice paddy soil: sulfide inhibition, kinetics, and regulation. Appl Environ Microbiol 60:291–297
Dojka MA, Hugenholtz P, Haack SK, Pace NR (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64:3869–3877
Duncan KE, Gieg LM, Parisi VA, Tanner RS, Tringe SG, Bristow J, Suflita JM (2009) Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol 43:7977–7984. doi:10.1021/es9013932
Duncan KE, Perez-Ibarra BM, Jenneman G, Busch Harris J, Webb R, Sublette K (2014) The effect of corrosion inhibitors on microbial communities associated with corrosion in a model flow cell system. Appl Microbiol Biotech 98:907–918. doi:10.1007/s00253-013-4906-x
Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996–998. doi:10.1038/nmeth.2604
Enning D, Venzlaff H, Garrelfs J, Dinh HT, Meyer V, Mayrhofer K, Hassel AW, Stratmann M, Widdel F (2012) Marine sulfate-reducing bacteria cause serious corrosion of iron under electroconductive biogenic mineral crust. Environ Microbiol 14:1772–1787. doi:10.1111/j.1462-2920.2012.02778.x
Ferris FG, Jack TR, Bramhill BJ (1992) Corrosion products associated with attached bacteria at an oil field water injection plant. Can J Microbiol 38:1320–1324
Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P, Bertrand J-C (1992) Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int J Syst Bacteriol 42:568–576
Gittel A, Sørensen KB, Skovhus TL, Ingvorsen K, Schramm A (2009) Prokaryotic community structure and sulfate reducer activity in water from high-temperature oil reservoirs with and without nitrate treatment. Appl Environ Microbiol 75:7086–7096. doi:10.1128/AEM.01123-09
Grabowski A, Nercessian O, Fayolle F, Blanchet D, Jeanthon C (2005) Microbial diversity in production waters of a low-temperature biodegraded oil reservoir. FEMS Microbiol Ecol 54:427–443
Grimaud R (2010) Chapt. 34. Marinobacter. In: Timmis KN (ed) Handbook of hydrocarbon and lipid microbiology. Springer-Verlag, Berlin, pp 1290–1295. doi:10.1007/978-3-540-77587-4_90
Guan J, Zhang BL, Mbadinga SM, Liu JF, Gu JD, Mu BZ (2014) Functional genes (dsr) approach reveals similar sulphidogenic prokaryotes diversity but different structure in saline waters from corroding high temperature petroleum reservoirs. Appl Microbiol Biotechnol 98:1871–1882. doi:10.1007/s00253-013-5152-y
Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5:235–237. doi:10.1038/nmeth.1184
Hattori S, Kamagata Y, Hanada S, Shoun H (2000) Thermacetogenium phaeum gen. nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. Int J Syst Evol Microbiol 50(4):1601–1609
Head IM, Jones DM, Larter SR (2003) Biological activity in the deep subsurface and the origin of heavy oil. Nature 426:344–352
Hubert CR, Oldenburg TB, Fustic M, Gray ND, Larter SR, Penn K, Rowan AK, Seshadri R, Sherry A, Swainsbury R, Voordouw G, Voordouw JK, Head IM (2012) Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil. Environ Microbiol 14:387–404. doi:10.1111/j.1462-2920.2011.02521.x
Ingvorsen K, Jørgensen BB (1984) Kinetics of sulfate uptake by freshwater and marine species of Desulfovibrio. Arch Microbiol 139:61–66
ISO 15156-2:2009(en) (2009) Petroleum and natural gas industries—materials for use in H2S-containing environments in oil and gas production—Part 2: cracking-resistant carbon and low-alloy steels, and the use of cast irons. Annex D: Recommendations for determining pH. pp. 37–41. International Organization for Standardization. https://www.iso.org/obp/ui/#iso:std:iso:15156:-2:ed-2:v1:en Accessed June 7, 2016
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids res 41:e1. doi:10.1093/nar/gks808
Kodama Y, Ha LT, Watanabe K (2007) Sulfurospirillum cavolei sp. nov., a facultatively anaerobic sulfur-reducing bacterium isolated from an underground crude oil storage cavity. Int J Syst Evol Microbiol 57:827–831. doi:10.1099/ijs.0.64823-0
L’Haridon S, Reysenbach A-L, Glenat P, Prieur D, Jeanthon C (1995) Hot subterranean biosphere in a continental oil reservoir. Nature 377:223–224
Lenhart TR, Duncan KE, Beech IB, Sunner JA, Smith W, Bonifay V, Biri B, Suflita JM (2014) Identification and characterization of microbial biofilm communities associated with corroded oil pipeline surfaces. Biofouling 30:823–835. doi:10.1080/08927014.2014.931379
Liang R, Grizzle RS, Duncan KE, McInerney MJ, Suflita JM (2014) Roles of thermophilic thiosulfate-reducing bacteria and methanogenic archaea in the biocorrosion of oil pipelines. Frontiers in Microbiology: Microbial Physiology and Metabolism 5:89. doi:10.3389/fmicb.2014.00089
Lovley DR, Phillips EJ, Lonergan DJ, Widman PK (1995) Fe(III) and S0 reduction by Pelobacter carbinolicus. Appl Environ Microbiol 61:2132–2138
Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228–8235. doi:10.1128/AEM.71.12.8228-8235.2005
Magot M, Ollivier B, Patel BK (2000) Microbiology of petroleum reservoirs. Antonie van Leeuwenhoek 77:103–116
Mayilraj S, Kaksonen AH, Cord Ruwisch R, Schumann P, Spröer P, Tindall BJ, Spring S (2009) Desulfonauticus autotrophicus sp. nov., a novel thermophilic sulfate-reducing bacterium isolated from oil-production water and emended description of the genus Desulfonauticus. Extremophiles 2:247–255. doi:10.1007/s00792
Miranda-Tello E, Fardeau ML, Sepúlveda J, Fernández L, Cayol JL, Thomas P, Ollivier B (2003) Garciella nitratireducens gen. nov., sp. nov., an anaerobic, thermophilic, nitrate- and thiosulfate-reducing bacterium isolated from an oilfield separator in the Gulf of Mexico. Int J Syst Evol Microbiol 53:1509–1514. doi:10.1099/ijs.0.02662-0008-0212-4
Morrison JM, Murphy CL, Baker K, Zamor RM, Nikolai SJ, Wilder S, Elshahed MS, Youssef NH (2017) Microbial communities mediating algal detritus turnover under anaerobic conditions. Peer J 5:e2803. doi:10.7717/peerj.2803
NACE Standard SP0775-(2013) (formerly RP0775). Preparation, installation, analysis, and interpretation of corrosion coupons in oil field operations; NACE International: Houston, TX, 2005; Item No. 21017
Nazina TN, Grigor’ian AA, Shestakova NM, Babich TL, Ivoĭlov VS, Feng Q, Ni F, Wang J, She Y, Xiang T, Luo Z, Beliaev SS, Ivanov MV (2007) Microbiological investigations of high-temperature horizons of the Kongdian petroleum reservoir in connection with field trial of a biotechnology for enhancement of oil recovery. Mikrobiologiia 76:329–339
Oldham AL, Drilling HS, Stamps BW, Stevenson BS, Duncan KE (2012) Automated DNA extraction platforms offer solutions to challenges of assessing microbial biofouling in oil production facilities. AMB Express 2:60. doi:10.1186/2191-0855-2-60
Ollivier B, Cayol J-L (2005) The fermentative, iron-reducing, and nitrate-reducing microorganisms. In: Ollivier B, Magot M (eds) Petroleum microbiology. ASM Press, Washington, D.C., pp 71–88
Price MN, Dehal PS, Arkin AP (2010) FastTree 2—approximately maximum-likelihood trees for large alignments. PLoS One 5:e9490. doi:10.1371/journal.pone.0009490
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188–7196. doi:10.1093/nar/gkm864
Rabus R, Boll M, Heider J, Meckenstock RU, Buckel W, Einsle O, Ermler U, Golding BT, Gunsalus RP, Kroneck PM, Krüger M, Lueders T, Martins BM, Musat F, Richnow HH, Schink B, Seifert J, Szaleniec M, Treude T, Ullmann GM, Vogt C, von Bergen M, Wilkes H (2016) Anaerobic microbial degradation of hydrocarbons: from enzymatic reactions to the environment. J Mol Microbiol Biotechnol 26:5–28. doi:10.1159/000443997
Ravot G, Magot M, Ollivier B, Patel BKC, Ageron E, Grimont PAD, Thomas P, Garcia J-L (1997) Haloanaerobium congolense sp. nov., an anaerobic, moderately halophilic, thiosulfate-reducing bacterium from an African oilfield. FEMS Microbiol Lett 147:81–88. doi:10.1111/j.1574-6968.1997.tb10224.x
Ravot G, Casalot L, Ollivier B, Loison G, Magot M (2005) rdlA, a new gene encoding a rhodanese-like protein in Halanaerobium congolense and other thiosulfate-reducing anaerobes. Res Microbiol 156:1031–1038. doi:10.1016/j.resmic.2005.05.009
Roalkvam I, Drønen K, Stokke R, Daae FL, Dahle H, Steen IH (2015) Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria. Front Microbiol 6:987. doi:10.3389/fmicb.2015.00987
Roh Y, Liu SV, Li G, Huang H, Phelps TJ, Zhou J (2002) Isolation and characterization of metal-reducing Thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado. Appl Environ Microbiol 268:6013–6020. doi:10.1128/AEM.68.12.6013-6020.2002
Shaw MP, Hoffmann H, Home M (2016) Case study: comparison of microbial monitoring techniques used in the field and how their complementarity can be harnessed to build a full picture of the microbial life in the field. In: SPE International Oilfield Corrosion Conference and Exhibition, Aberdeen, Scotland, UK, 9–10 May, SPE-179936-MS
Simankova MV, Chernych NA, Zavarzin GA (1993) Halocella cellulolytica gen. nov., sp. nov., a new obligately anaerobic, halophilic, cellulolytic bacterium. Syst Appl Microbiol 16:385–389. doi:10.1016/S0723-2020(11)80270-5
Skovhus TL, Eckert RB (2014) Practical aspects of MIC detection, monitoring and management in the oil and gas industry. Paper #3920, Corrosion 2014, San Antonio TX, USA, March 9–13, 2014
Skovhus TL, Lee JS, Little BJ (2017) Predominant MIC mechanisms in the oil and gas industry. Chapt. 4, pp. 75–86 In Skovhus TL, Enning E, and Lee JS (eds.) Microbiologically Influenced Corrosion in the Upstream Oil and Gas Industry. Routledge. doi:10.1201/9781315157818-5
Stevenson BS, Drilling HS, Lawson PA, Duncan KE, Parisi VA, Suflita JM (2011) Microbial communities in bulk fluids and biofilms of an oil facility have similar composition but different structure. Environ Microbiol 13:1078–1090. doi:10.1111/j.1462-2920.2010.02413.x
Ulrich GA, Krumholz LR, Suflita JM (1997) A rapid and simple method for estimating sulfate reduction activity and quantifying inorganic sulfides. Appl Environ Microbiol 63:1627–1630
Videla HA, Guiawet PS, Saravia SG, Allegreti P, Furlong J (2000) Microbial degradation of film forming inhibitors and its possible effects on corrosion inhibition performance. In: NACE Corrosion 2000 (Paper no. 00386), Houston, TX, NACE International, 2000
Vigneron A, Alsop EB, Chambers B, Lomans BP, Head IM, Tsesmetzis N (2016) Complementary microorganisms in highly corrosive biofilms from an offshore oil production facility. Appl Environ Microbiol 82:2545–2554. doi:10.1128/AEM.03842-15
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–5267. doi:10.1128/AEM.00062-07
Yakimov MM, Denaro R, Genovese M, Cappello S, D’Auria G, Chernikova TN, Timmis KN, Golyshin PN, Giluliano L (2005) Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ Microbiol 7(9):1426–1441
Youssef N, Elshahed MS, McInerney MJ (2009) Microbial processes in oil fields: culprits, problems, and opportunities. In: Allen I, Laskin SS, Geoffrey MG (eds) Adv Appl Microbiol, vol 66. Academic Press, Burlington, pp 141–251
Zeikus JG, Hegge PW, Thompson TE, Phelps TJ (1983) Isolation and description of Haloanaerobium praevalens gen. nov. and sp. nov., an obligately anaerobic halophile common to Great Salt Lake sediments. Curr Microbiol 9:225–234. doi:10.1007/BF01567586
Zhang J, Kobert K, Flouri T, Stamatakis A (2014) PEAR: a fast and accurate Illumina Paired-End reAd mergeR. Bioinformatics 30:1–7. doi:10.1093/bioinformatics/btt593
Acknowledgements
The authors would like to thank Total S.A. for providing the samples and Charles Primeaux for technical assistance.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Funding
This work was funded by the University of Oklahoma Biocorrosion Center: SRA FY10-ORA3-24.
Conflict of interest
The authors declare that they have no competing interests.
Ethical approval
This research does not contain any studies with human participants or animals.
Electronic supplementary material
.
ESM 1
(PDF 265 kb)
Rights and permissions
About this article
Cite this article
Duncan, K.E., Davidova, I.A., Nunn, H.S. et al. Design features of offshore oil production platforms influence their susceptibility to biocorrosion. Appl Microbiol Biotechnol 101, 6517–6529 (2017). https://doi.org/10.1007/s00253-017-8356-8
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-017-8356-8