Skip to main content

Pathogenic and Mutualistic Symbiotic Interactions in Angiosperm Trees

  • Chapter
  • First Online:
Comparative and Evolutionary Genomics of Angiosperm Trees

Part of the book series: Plant Genetics and Genomics: Crops and Models ((PGG,volume 21))

  • 958 Accesses

Abstract

Plants and microbes have formed intimate associations since the emergence of plants onto dry land. The impact of these associations on the plant can range across a spectrum from parasitic to beneficial. In all cases, the interaction between plant and microbes has necessitated the development of a properly balanced plant immune system. We investigate here how the advent of the genomics era has impacted our understanding of plant:microbe symbioses for angiosperm trees.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 139.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 179.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Ané JM, Lévy J, Thoquet P, Kulikova O, de Billy F, Penmetsa V, Kim DJ, Debellé F, Rosenberg C, Cook DR, Bisseling T, Huguet T, Dénarié J. Genetic and cytogenetic mapping of DMI1, DMI2, and DMI3 genes of Medicago truncatula involved in Nod factor transduction, nodulation, and mycorrhization. Mol Plant Microbe Interact. 2002;15:1108–18.

    Article  PubMed  Google Scholar 

  • Arnold AE, Mejia LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, et al. Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci U S A. 2003;100:15649–54.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Arrighi J-F, Barre A, Amor BB, Bersoult A, Campos Soriano L, Mirabella R, de Carvalho-Niebel F, Journet E-P, Ghérardi M, Huguet T, Geurts R, Dénarié J, Rougé P, Gough C. The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes. Plant Physiol. 2006;142:265–79.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barakat A, Staton M, Cheng CH, Park J, Yassin NB, Ficklin S, Yeh CC, Hebard F, Baier K, Powell W, Schuster SC, Wheeler N, Abbott A, Carlson JE, Sederoff R. Chestnut resistance to the blight disease: insights from transcriptome analysis. BMC Plant Biol. 2012;12:38.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Boava LP, Cristofani-Yaly M, Mafra VS, Kubo K, Kishi LT, Takits MA, Ribeiro-Alves M, Machado MA. Global gene expression of Poncirus trifloiata, Citrus sunki and their hybrids under infection of Phytophthora parasitica. BMC Genomics. 2011;12:39.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bonfante P, Selosse M-A. A glimpse into the past of land plants and of their mycorrhizal affairs: from fossils to evo-devo. New Phytol. 2010;186:267–70.

    Article  PubMed  Google Scholar 

  • Brasier CM. The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathol. 2008;57:792–808.

    Article  Google Scholar 

  • Busby PE, Zimmerman N, Weston DJ, Jawdy SS, Houbraken J, Newcombe G. Leaf endophytes and Populus genotype affect severity of damage from the necrotrophic leaf pathogen, Drepanopeziza populi. Ecosphere. 2013;4:125.

    Article  Google Scholar 

  • Camehl I, Sherameti I, Venus Y, Bethke G, Varma A, Lee J, Oelmüller R. Ethylene signalling and ethylene-targeted transcription factors are required for balancing beneficial and non-beneficial traits in the symbiosis between the endophytic fungus Piriformospora indica and Arabidopsis thaliana. New Phytol. 2010;185:1062–73.

    Article  CAS  PubMed  Google Scholar 

  • Casieri L, Lahmidi NA, Doidy J, Veneault-Fourrey C, Migeon A, Bonneau L, Courty P-E, Garcia K, Charbonnier M, Delteil A, Brun A, Zimmermann S, Plassard C, Wipf D. Biotrophic transportome in mutualistic plant-fungal interactions. Mycorrhiza. 2013;23:597–625.

    Article  CAS  PubMed  Google Scholar 

  • Chen C, Yao Y, Zhang L, Xu M, Jiang J, Dou T, et al. A Comprehensive Analysis of the transcriptomes of Marssonina brunnea and infected poplar leaves to capture vital events in host-pathogen interactions. PLoS One. 2015;10:e0134246.

    Article  PubMed  PubMed Central  Google Scholar 

  • Crozier J, Thomas SE, Aime MC, Evans HC, Holmes KA. Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao. Plant Pathol. 2006;55:783–91.

    Article  CAS  Google Scholar 

  • Czaja LF, Hogekamp C, Lamm P, Maillet F, Martinez EA, Samain E, Denari J, Keuster H, Hohnjec N. Transcriptional responses toward diffusible signals from symbiotic microbes reveal MtNFP- and MtDMI3-dependent reprogramming of host gene expression by arbuscular mycorrhizal fungal lipochitooligosaccharides. Plant Physiol. 2012;159:1671–85.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Delaux P-M, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané J-M. Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution. PLoS Genet. 2014;10:e1004487.

    Article  PubMed  PubMed Central  Google Scholar 

  • Desiro A, Duckett JG, Pressel S, Villarreal JC, Bidartondo MI. Fungal symbioses in hornworts: a chequered history. Proc R Soc B Biol Sci. 2013;280:1–8.

    Article  Google Scholar 

  • Duplessis S, Courty P-E, Tagu D, Martin F. Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus. New Phytol. 2005;165:599–611.

    Article  CAS  PubMed  Google Scholar 

  • Field KJ, Rimington WR, Bidartondo MI, Allinson KE, Beerling DJ, Cameron DD, Duckett JG, Leake JR, Pressel S. First evidence of mutualism between ancient plant lineages (Haplomitriopsida liverworts) and Mucoromycotina fungi and its response to simulated Palaeozoic changes in atmospheric CO2. New Phytol. 2014;205:743–56.

    Article  PubMed  PubMed Central  Google Scholar 

  • Foster AJ, Pelletier G, Tanguay P, Seguin A. Transcriptome analysis of poplar during leaf spot infection with Sphaerulina spp. PLoS One. 2015;17:e0138162.

    Article  Google Scholar 

  • Frettinger P, Derory J, Herrmann S, Plomion C, Lapeyrie F, Oelmuller R, Martin F, Buscot F. Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum. Planta. 2007;225:331–40.

    Article  CAS  PubMed  Google Scholar 

  • Genre A, Ortu G, Bertoldo C, Martino E, Bonfante P. Biotic and abiotic stimulation of root epidermal cells reveals common and specific responses to arbuscular mycorrhizal fungi. Plant Physiol. 2009;149:1424–34.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goss EM, Tabima JF, Cooke DEL, Restrepo S, Gry WE, Forbes GA, Fieland VJ, Cardenas M, Grunwald NJ. The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. Proc Natl Acad Sci U S A. 2014;111:8791–6.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hallmann J, Quadt-Hallmann A, Mahaffee WF, Kloepper JW. Bacterial endophytes in agricultural crops. Can J Microbiol. 1997;43:895–914.

    Article  CAS  Google Scholar 

  • Hanada RE, Pomella AW, Costa HS, Bezerra JL, Loguercio LL, Pereira JO. Endophytic fungal diversity in Theobroma cacao (cacao) and T. grandiflorum (cupuacu) trees and their potential for growth promotion and biocontrol of black-pod disease. Fungal Biol. 2010;114:901–10.

    Article  PubMed  Google Scholar 

  • Hayden KJ, Garbelotto M, Knaus BJ, Cronn RC, Rai H, Wright JW. Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host. Tree Genet Genomes. 2014;10:489–502.

    Article  Google Scholar 

  • Johansson T, Le Quéré A, Ahren D, Söderström B, Erlandsson R, Lundeberg J, Uhlén M, Tunlid A. Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. Mol Plant Microbe Interact. 2004;17:202–15.

    Article  PubMed  Google Scholar 

  • Kiers ET, Duhamel M, Beesetty Y, Mensah JA, Franken O, Verbruggen E, Fellbaum CR, Kowalchuk GA, Hart MM, Bago A, Palmer TM, West SA, Vandenkoornhuyse P, Jansa J, Bucking H. Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science. 2011;333:880–2.

    Article  CAS  PubMed  Google Scholar 

  • Kloppholz S, Kuhn H, Requena N. A secreted fungal effector of Glomus intraradices promotes symbiotic biotrophy. Curr Biol. 2011;21:1204–9.

    Article  CAS  PubMed  Google Scholar 

  • Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A; Mycorrhizal Genomics Initiative Consortium, Tunlid A, Grigoriev IV, Hibbett DS, Martin F. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nat Genet. 2015;47:410–5.

    Google Scholar 

  • Konate I, Ouattara A, Coulibaly B, Guei RN, Amani K, Kouadio KI, Filali-Maltouf A, Koffi M. Phenotypic diversity of associative bacteria isolated from roots and stems of cacao (Theobroma cacao) tree in Daloa, Côte d Ivoire. Int J Curr Microbiol App Sci. 2015;4:560–70.

    Google Scholar 

  • Kurth F, Mailänder S, Bönn M, Feldhahn L, Herrmann S, Große I, Buscot F, Schrey SD, Tarkka MT. Streptomyces-induced resistance against oak powdery mildew involves host plant responses in defense, photosynthesis, and secondary metabolism pathways. Mol Plant Microbe Interact. 2014;27:891–900.

    Article  CAS  PubMed  Google Scholar 

  • Loth-Pereda V, Orsini E, Courty PE, Lota F, Kohler A, Diss L, Blaudez D, Chalot M, Nehls U, Bucher M, Martin F. Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiol. 2011;156:2141–54.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mejia LC, Rojas EI, Maynard Z, van Bael SA, Arnold EA, Hebbar P, et al. Endophytic fungi as biocontrol agents of Theobroma cacao pathogens. Biol Control. 2008;46:4–14.

    Article  Google Scholar 

  • Mejia LC, Herre EA, Sparks JP, Winter K, Garcia MN, van Bael SA, Stitt J, Shi Z, Zhang Y, Guiltinan MJ, Maximova SN. Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree. Front Microbiol. 2014;5:479.

    PubMed  PubMed Central  Google Scholar 

  • Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 2008;452:991–6.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J. The genome of Eucalyptus grandis. Nature. 2014;510:356–62.

    CAS  PubMed  Google Scholar 

  • Larsen PE, Sreedasyam A, Trivedi G, Podila GK, Cseke LJ, Collart FR. Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. BMC Syst Biol. 2011;5:70.

    Article  PubMed  PubMed Central  Google Scholar 

  • Le Quéré A, Wright DP, Söderström B, Tunlid A, Johansson T. Global patterns of gene regulation associated with the development of ectomycorrhiza between birch (Betula pendula Roth.) and Paxillus involutus (Batsch) Fr. Mol Plant Microbe Interact. 2005;18:659–73.

    Article  PubMed  Google Scholar 

  • Liao W, Ji L, Wang J, Chen Z, Ye M, Ma H, An X. Identification of glutathione S-transferase genes responding to pathogen infestation in Populus tomentosa. Funct Integr Genomics. 2014;14:517–29.

    Article  CAS  PubMed  Google Scholar 

  • Martin F, Kamoun S. Effectors in plant-microbe interactions. Chichester: Wiley Blackwell; 2012.

    Google Scholar 

  • Nehls U, Gohringer F, Wittulsky S, Dietz S. Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review. Plant Biol. 2010;12:292–301.

    Article  CAS  PubMed  Google Scholar 

  • Pallara G, Todeschini V, Lingua G, Camussi A, Racchi ML. Transcript analysis of stress defence genes in a white poplar clone inoculated with the abuscular mycorrhizal fungus Glomus mosseae. Plant Physiol Biochem. 2013;63:131–9.

    Article  CAS  PubMed  Google Scholar 

  • Perdiguero P, Venturas M, Cervera MT, Gil L, Collada C. Massive sequencing of Ulmus minor’s transcriptome provides new molecular tools for a genus under the constant threat of Dutch elm disease. Front Plant Sci. 2015;20:541.

    Google Scholar 

  • Pereira VT, Sousa L, de Sousa AT, Pais MS. Mechanisms of resistance/tolerance of Pyrus communis to Stemphylium vesicarium. A transcriptome analysis. Agr Syst. 2015;89:991–1017.

    Article  Google Scholar 

  • Petre B, Morin E, Tisserant E, Hacquard S, Da Silva C, et al. RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici- populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. PLoS One. 2012;7:e44408.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Plett JM, Kemppainen M, Kale SD, Kohler A, Legué V, Brun A, Tyler BM, Pardo AG, Martin F. A secreted effector protein of Laccaria bicolor is required for symbiosis development. Curr Biol. 2011;21:1197–203.

    Article  CAS  PubMed  Google Scholar 

  • Plett JM, Daguerre Y, Wittulsky S, Vayssières A, Deveau A, Melton S, et al. The effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes. Proc Natl Acad Sci U S A. 2014a;111:8299–304.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Plett JM, Khachane A, Ouassou M, Sundberg B, Kohler A, Martin F. Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots. New Phytol. 2014b;202:270–86.

    Article  CAS  PubMed  Google Scholar 

  • Plett JM, Kohler A, Khachane A, Keniry K, Plett KL, Martin F, Anderson IC. The effect of elevated carbon dioxide on the interaction between Eucalyptus grandis and diverse isolates of Pisolithus sp. Is associated with a complex shift in the root transcriptome. New Phytol. 2015a;206:1423–36.

    Article  CAS  PubMed  Google Scholar 

  • Plett JM, Tisserant E, Brun A, Morin E, Grigoriev IV, Kuo A, Martin F, Kohler A. The mutualist Laccaria bicolor expresses a core gene regulon during the colonization of diverse host plants and a variable regulon to counteract host-specific defences. Mol Plant Microbe Interact. 2015b;28:261–73.

    Article  CAS  PubMed  Google Scholar 

  • Plomion C, Aury JM, Amselem J, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Boudet N, Boury C, Canaguier A, Couloux A, Da Silva C, Duplessis S, Ehrenmann F, Estrada-Mairey B, Fouteau S, Francillonne N, Gaspin C, Guichard C, Klopp C, Labadie K, Lalanne C, Le Clainche I, Leplé JC, Le Provost G, Leroy T, Lesur I, Martin F, Mercier J, Michotey C, Murat F, Salin F, Steinbach D, Faivre-Rampant P, Wincker P, Salse S, Quesneville H, Kremer A. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Mol Ecol Resour. 2015. doi:10.1111/1755-0998.12425.

    Google Scholar 

  • Porter BW, Zhu YJ, Christopher DA. Carica papaya genes regulated by Phytophthora palmivora: a model system for genomic studies of compatible Phytophthora-plant interactions. Trop Plant Biol. 2009;2:84–97.

    Article  CAS  Google Scholar 

  • Raghavendra AKH, Newcombe G. The contribution of foliar endophytes to quantitative resistance to Melampsora rust. New Phytol. 2013;197:909–18.

    Article  PubMed  Google Scholar 

  • Reeksting BJ, Coetzer N, Mahomed W, Engelbrecht J, van den Berg N. De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding. PLoS One. 2014;9(2):e86399.

    Article  PubMed  PubMed Central  Google Scholar 

  • Rey T, Nars A, Bonhomme M, Bottin A, Huguet S, Balzergue S, Jardinaud MF, Bono JJ, Cullimore J, Dumas B, et al. NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens. New Phytol. 2013;198:875–86.

    Article  CAS  PubMed  Google Scholar 

  • Rey T, Chatterjee A, Buttay M, Toulotte J, Schornack S. Medicago truncatula symbiosis mutants affected in the interaction with a biotrophic root pathogen. New Phytol. 2015;206:497–500.

    Article  PubMed  Google Scholar 

  • Rimington WR, Pressel S, Duckett JG, Bidartondo MI. Fungal symbioses of basal vascular plants: reopening a closed book. New Phytol. 2015;205:1394–8.

    Article  CAS  PubMed  Google Scholar 

  • Rinaldi C, Kohler A, Frey P, Duchaussoy F, Ningre N, Couloux A, Wincker P, Le Thiec D, Fluch S, Martin F, Duplessis S. Transcript profiling of poplar leaves upon infection with compatible and incompatible strains of the foliar rust Melampsora larici-populina. Plant Physiol. 2007;144:347–66.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rodriguez RJ, White Jr JF, Arnold AE, Redman RS. Fungal endophytes: diversity and functional roles. New Phytol. 2009;182:314–30.

    Article  CAS  PubMed  Google Scholar 

  • Rojas EI, Rehner SA, Samuels GJ, VanBael SA, Herre EA, Cannon P, et al. Colletotrichum gloeosporioides s.l. associated with Theobroma cacao and other plants in Panama: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes. Mycologia. 2010;102:1318–38.

    Article  PubMed  Google Scholar 

  • Schlink K. Down-regulation of defence genes and resourse allocation into infected roots as factors for compatibility between Fagus sylvatica and Phytophthera citricola. Funct Integr Genomics. 2010;10:253–64.

    Article  CAS  PubMed  Google Scholar 

  • Sebastiana M, Figueiredo A, Acioli B, Sousa L, Pessoa F, Balde A, Pais MS. Identification of plant genes involved on the initial contact between ectomycorrhizal symbionts (Castanea sativa – European chestnut and Pisolithus tinctorius). Eur J Soil Biol. 2009;45:275–82.

    Article  CAS  Google Scholar 

  • Sebastiana M, Vieira B, Lino-Neto T, Monteiro F, Figueiredo A, Sousa L, Pais SM, Tavares R, Paulo OS. Oak root response to ectomycorrhizal symbiosis establishment: RNA-seq derived transcript identification and expression profiling. PLoS One. 2014;9(5):e98376.

    Article  PubMed  PubMed Central  Google Scholar 

  • Selle A, Willman M, Grunze N, Geßler A, Weiß M, Nehls U. The high-affinity poplar ammonium importer PttAMT1.2 and its role in ectomycorrhizal symbiosis. New Phytol. 2005;168:697–706.

    Article  CAS  PubMed  Google Scholar 

  • Selosse M-A, Le Tacon F. The land flora: a phototroph–fungus partnership? Trends Ecol Evol. 1998;13:15–20.

    Article  CAS  PubMed  Google Scholar 

  • Selosse M-A, Strullu-Derrien C. Origins of the terrestrial flora: a symbiosis with fungi? In: Maurel M-C, Grandcolas P, editors. Origins. Les Ullis: EDP Sciences; 2015.

    Google Scholar 

  • Strullu-Derrien C, Kenrick P, Rioult JP, Strullu DG. Evidence of parasitic Oomycetes (Peronosporomycetes) infecting the stem cortex of the Carboniferous seed fern Lyginopteris oldhamia. Proc R Soc B Biol Sci. 2011;278:675–80.

    Article  CAS  Google Scholar 

  • Strullu-Derrien C, Kenrick P, Pressel S, Duckett JG, Rioult J-P, Strullu D-G. Fungal associations in Horneophyton ligneri from the Rhynie Chert (c. 407 million year old) closely resemble those in extant lower land plants: novel insights into ancestral plant–fungus symbioses. New Phytol. 2014;203:964–79.

    Article  PubMed  Google Scholar 

  • Tarkka MT, Herrman S, Wubet T, Feldhahn L, Recht S, Kurth F, et al. OakContigDF159.1, a reference library for studying differential gene expression in Quercus robur during controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis. New Phytol. 2013;199:529–40.

    Article  CAS  PubMed  Google Scholar 

  • Taylor TN, Krings M, Kerp H. Hassiella monospora gen. et sp. nov., a microfungus from the 400 million year old Rhynie chert. Mycol Res. 2006;110:628–32.

    Article  PubMed  Google Scholar 

  • Taylor TN, Krings M, Taylor EL. Fossil fungi. San Diego: Academic; 2014.

    Google Scholar 

  • Tromas A, Parizot B, Diagne N, Champion A, Hocher V, Cissoko M, et al. Heart of endosymbioses: transcriptomics reveals a conserved genetic program among arbuscular mycorrhizal, actinorhizal and legume-rhizobial symbioses. PLoS One. 2012;7(9):e44742.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 2006;313:1596–604.

    Article  CAS  PubMed  Google Scholar 

  • VanBael SA, Estrada C, Wcislo WT. Fungal-fungal interactions in leaf-cutting ant agriculture. Psyche. 2011;2011:617478. doi:10.1155/2011/617478.

    Google Scholar 

  • Van Bael SA, Seid MA, Wcislo WT. Endophytic fungi increase the processing rate of leaves by leaf-cutting ants (Atta). Ecol Entomol. 2012;37:318–21.

    Article  Google Scholar 

  • Veluthakkal R, Dasgupta MG. Pathogenesis-related genes and proteins in forest tree species. Trees. 2010;24:993–1006.

    Article  CAS  Google Scholar 

  • Wang E, Schornack S, Marsh JF, Gobbato E, Schwessinger B, Eastmond P, Schultze M, Kamoun S, Oldroyd GE. A common signaling process that promotes mycorrhizal and oomycete colonization of plants. Curr Biol. 2012;22:2242–6.

    Article  CAS  PubMed  Google Scholar 

  • Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat Biotechnol. 2014;32:656–62.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang X, Dong W, Sun J, Feng F, Deng Y, He Z, Oldroyd GED, Wang E. The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling. Plant J. 2015;81:258–67.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing Switzerland

About this chapter

Cite this chapter

Plett, K.L., Plett, J.M. (2017). Pathogenic and Mutualistic Symbiotic Interactions in Angiosperm Trees. In: Groover, A., Cronk, Q. (eds) Comparative and Evolutionary Genomics of Angiosperm Trees. Plant Genetics and Genomics: Crops and Models, vol 21. Springer, Cham. https://doi.org/10.1007/7397_2016_1

Download citation

Publish with us

Policies and ethics