Abstract
Organic farming and agroforestry are considered as sustainable alternative agricultural practices for intensive agriculture. In a long-term field trial in Scheyern Germany, we evaluated the effects of 21-year organic farming and 4-year agroforestry (robinia and poplar) on microbial community and microbial residues. Microbial biomass and microbial community were determined by fumigation–extraction method and the analysis of phospholipid fatty acid (PLFA), respectively. Microbial residues were evaluated by the measurement of amino sugars. The results showed that organic farming had significantly positive effect on soil organic carbon (SOC) but that it tended to decrease microbial biomass C (MBC), PLFA functional guilds, muramic acid (MurN), and glucosamine (GlcN). Robinia system, however, significantly increased SOC and had the potential to enhance MBC, PLFA functional guilds especially Gram (+), but it tended to decrease MurN and GlcN, in comparison with poplar system. The hedgerow tree did not show significantly positive effect on SOC and microbial properties except the abundance of fungi and Gram (+) bacterial, after 4-year establishment period. The principal component analysis of the PLFA profile showed that in comparison with other investigated treatments, robinia system under organic farming had significantly a different microbial community structure. It also indicated tree species-specific effect on microbial community in the organic farming was stronger than that in the integrated farming. In summary, the short-term introduction of trees into an existing agricultural system will not substantially change the microbial biomass, but it has certain influence on the abundance of specific microbial groups in the hedgerow. Although organic farming did not show positive effect on overall microbial indices, we still see positive effect on SOC after 21-year organic farming and its additive effect with robinia on SOC in current study. We expect that alley-cropping agroforestry system that combines organic farming and robinia hedgerow has a great potential for sequestering SOC and developing sustainable agroecosystems with time.
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References
Andersen R, Grasset L, Thormann MN, Rochefort L, Francez AJ (2010) Changes in microbial community structure and function following Sphagnum peatland restoration. Soil Biol Biochem 42:291–301
Appuhn A, Joergensen RG (2006) Microbial colonisation of roots as a function of plant species. Soil Biol Biochem 38:1040–1051
Appuhn A, Joergensen RG, Raubuch M, Scheller E, Wilke B (2004) The automated determination of glucosamine, galactosamine, muramic acid, and mannosamine in soil and root hydrolysates by HPLC. J Plant Nutr Soil Sci 167:17–21
Bardhan S, Jose S, Udawatta RP, Fritschi F (2013) Microbial community diversity in a 21-year-old temperate alley cropping system. Agroforest Syst 87:1031–1041
Burrows RL (2014) Glomalin production and infectivity of arbuscular-mycorrhizal fungi in response to grassland plant diversity Am J. Plant Sci 05:103–111
Colaco A, Desbruyeres D, Guezennec J (2007) Polar lipid fatty acids as indicators of trophic associations in a deep-sea vent system community. Mar Ecol Evol Perspect 28:15–24
Davidson EA et al (2002) Belowground carbon allocation in forests estimated from litterfall and IRGA-based soil respiration measurements. Agric For Meteorol 113:39–51
Engelking B, Flessa H, Joergensen RG (2007) Shifts in amino sugar and ergosterol contents after addition of sucrose and cellulose to soil. Soil Biol Biochem 39:2111–2118
Esperschütz J, Gattinger A, Mäder P, Schloter M, Fliessbach A (2007) Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiol Ecol 61:26–37
Fließbach A, Oberholzer H-R, Gunst L, Mäder P (2007) Soil organic matter and biological soil quality indicators after 21 years of organic and conventional farming. Agric Ecosyst Environ 118:273–284
Frostegård A, Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22:59–65
Gattinger A, Ruser R, Schloter M, Munch JC (2002) Microbial community structure varies in different soil zones of a potato field. J Plant Nutr Soil Sci 165:421–428
Gattinger A et al (2012) Enhanced top soil carbon stocks under organic farming. Proc Natl Acad Sci USA 109:18226–18231
Gupta N, Kukal SS, Bawa SS, Dhaliwal GS (2009) Soil organic carbon and aggregation under poplar based agroforestry system in relation to tree age and soil type. Agroforest Syst 76:27–35
Habekost M, Eisenhauer N, Scheu S, Steinbeiss S, Weigelt A, Gleixner G (2008) Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment. Soil Biol Biochem 40:2588–2595
Indorf C, Dyckmans J, Khan KS, Joergensen RG (2011) Optimisation of amino sugar quantification by HPLC in soil and plant hydrolysates. Biol Fertil Soils 47:387–396
Joergensen R (1995) The fumigation-extraction method to estimate soil microbial biomass: extraction with 0.01 M CaCl2. Agribiol Res 48:3–4
Joergensen RG (1996) The fumigation-extraction method to estimate soil microbial biomass: calibration of the k EC value. Soil Biol Biochem 28:25–31
Joergensen RG, Mueller T (1996) The fumigation-extraction method to estimate soil microbial biomass: calibration of the k EN value. Soil Biol Biochem 28:33–37
Joergensen RG, Wichern F (2008) Quantitative assessment of the fungal contribution to microbial tissue in soil. Soil Biol Biochem 40:2977–2991
Joergensen RG, Wu JS, Brookes PC (2011) Measuring soil microbial biomass using an automated procedure. Soil Biol Biochem 43:873–876
Kaleeem Abbasi M, Mahmood Tahir M, Sabir N, Khurshid M (2015) Impact of the addition of different plant residues on nitrogen mineralization-immobilization turnover and carbon content of a soil incubated under laboratory conditions. Solid Earth 6:197–205
Kaur B, Gupta SR, Singh G (2000) Soil carbon, microbial activity and nitrogen availability in agroforestry systems on moderately alkaline soils in northern India. Appl Soil Ecol 15:283–294
Koelbl A, Kögel-Knabner I (2004) Content and composition of free and occluded particulate organic matter in a differently textured arable Cambisol as revealed by solid-state (13)C NMR spectroscopy. J Plant Nutr Soil Sci 167:45–53
Kuntz M, Berner A, Gattinger A, Scholberg JM, Mader P, Pfiffner L (2013) Influence of reduced tillage on earthworm and microbial communities under organic arable farming. Pedobiologia 56:251–260
Liang C, Fujinuma R, Wei LP, Balser TC (2007) Tree species-specific effects on soil microbial residues in an upper Michigan old-growth forest system. Forestry 80:65–72
Lipiec J, Kuś J, Słowińska-Jurkiewicz A, Nosalewicz A (2006) Soil porosity and water infiltration as influenced by tillage methods. Soil Tillage Res 89:210–220
Lorenz K, Lal R (2014) Soil organic carbon sequestration in agroforestry systems. A review. Agron Sustain Dev 34:443–454
Ludwig M, Achtenhagen J, Miltner A, Eckhardt KU, Leinweber P, Emmerling C, Thiele-Bruhn S (2015) Microbial contribution to SOM quantity and quality in density fractions of temperate arable soils. Soil Biol Biochem 81:311–322
Mäder P, Fliessbach A, Dubois D, Gunst L, Fried P, Niggli U (2002) Soil fertility and biodiversity in organic farming. Science 296:1694–1697
Marriott EE, Wander MM (2006) Total and labile soil organic matter in organic and conventional farming systems. Soil Sci Soc Am J 70:950–959
Medinski TV, Freese D, Böhm C (2015) Soil CO2 flux in an alley-cropping system composed of black locust and poplar trees, Germany. Agroforest Syst 89:267–277
Monokrousos N, Papatheodorou EM, Stamou GP (2008) The response of soil biochemical variables to organic and conventional cultivation of Asparagus sp. Soil Biol Biochem 40:198–206
Muñoz C, Zagal E, Ovalle C (2007) Influence of trees on soil organic matter in Mediterranean agroforestry systems: an example from the ‘Espinal’ of central Chile. Eur J Soil Sci 58:728–735
Murugan R, Koch H-J, Joergensen RG (2014) Long-term influence of different tillage intensities on soil microbial biomass, residues and community structure at different depths. Biol Fertil Soils 50:487–498
Nair PKR, Nair VD, Kumar BM, Showalter JM (2010) Carbon sequestration in agroforestry systems. Adv Agron 108:237–307
Nii-Annang S, Grünewald H, Freese D, Hüttl RF, Dilly O (2009) Microbial activity, organic C accumulation and 13C abundance in soils under alley cropping systems after 9 years of recultivation of quaternary deposits. Biol Fertil Soils 45:531–538
Oksanen J, Blanchet FG, Roeland K, Legendre P, Minchin PR, O’Hara RB, Peter Solymos GLS, Stevens MHH, Wagner H (2015) Vegan: community ecology package. R package version 2.3-0. http://CRAN.R-project.org/package=vegan
Olsson PA, Bååth E, Jakobsen I, Söderström B (1995) The use of phospholipid and neutral lipid fatty acids to estimate biomass of arbuscular mycorrhizal fungi in soil. Mycol Res 99:623–629
R Core Team (2015) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/
Raich JW, Clark DA, Schwendenmann L, Wood TE (2014) Aboveground tree growth varies with belowground Carbon allocation in a tropical rainforest environment. Plos One 9:e100275
Rillig M, Wright S, Eviner V (2002) The role of arbuscular mycorrhizal fungi and glomalin in soil aggregation: comparing effects of five plant species. Plant Soil 238:325–333
Schröder P, Huber B, Olazabal U, Kammerer A, Munch JC (2002) Land use and sustainability: FAM research network on agroecosystems. Geoderma 105:155–166
Six J, Frey SD, Thiet RK, Batten KM (2006) Bacterial and fungal contributions to carbon sequestration in agroecosystems. Soil Sci Soc Am J 70:555–569
Thoms C, Gleixner G (2013) Seasonal differences in tree species’ influence on soil microbial communities. Soil Biol Biochem 66:239–248
Thoms C, Gattinger A, Jacob M, Thomas FM, Gleixner G (2010) Direct and indirect effects of tree diversity drive soil microbial diversity in temperate deciduous forest. Soil Biol Biochem 42:1558–1565
Udawatta RP, Kremer RJ, Garrett HE, Anderson SH (2009) Soil enzyme activities and physical properties in a watershed managed under agroforestry and row-crop systems. Agric Ecosyst Environ 131:98–104
Udawatta RP, Kremer RJ, Nelson KA, Jose S, Bardhan S (2014) Soil quality of a mature alley cropping agroforestry system in temperate north America. Commun Soil Sci Plan 45:2539–2551
Unger IM, Goyne KW, Kremer RJ, Kennedy AC (2013) Microbial community diversity in agroforestry and grass vegetative filter strips. Agroforest Syst 87:395–402
Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19:703–707
Wright SF, Upadhyaya A (1996) Extraction of an abundant and unusual protein from soil and comparison with hyphal protein of arbuscular mycorrhizal fungi. Soil Sci 161:575–586
Wright SF, Upadhyaya A (1998) A survey of soils for aggregate stability and glomalin, a glycoprotein produced by hyphae of arbuscular mycorrhizal fungi. Plant Soil 198:97–107
Yevdokimov IV, Gattinger A, Buegger F, Schloter M, Munch JC (2012) Changes in the structure and activity of a soil microbial community caused by inorganic nitrogen fertilization. Microbiology 81:743–749
Zaia FC, Gama-Rodrigues AC, Gama-Rodrigues EF, Moço MKS, Fontes AG, Machado RCR, Baligar VC (2012) Carbon, nitrogen, organic phosphorus, microbial biomass and N mineralization in soils under cacao agroforestry systems in Bahia. Braz Agroforest Syst 86:197–212
Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35:275–294
Zelles L (1999) Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biol Fertil Soils 29:111–129
Zelles L, Bai QY (1993) Fractionation of fatty acids derived from soil lipids by solid phase extraction and their quantitative analysis by GC-MS. Soil Biol Biochem 25:495–507
Acknowledgments
The authors thank Adolphe Munyangabe and Gabriele Dormann for their help in the sample analysis, and the anonymous reviewers for their constructive comments. Han Yin Sun was funded by the Chinese Scholarship Council (CSC) and Helmholtz Zentrum München.
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Sun, H., Koal, P., Gerl, G. et al. Microbial communities and residues in robinia- and poplar-based alley-cropping systems under organic and integrated management. Agroforest Syst 92, 35–46 (2018). https://doi.org/10.1007/s10457-016-0009-x
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DOI: https://doi.org/10.1007/s10457-016-0009-x