Volume 19, issue 1, December 2018
376 articles in this issue
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SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis
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Web-based design and analysis tools for CRISPR base editing
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Fast and scalable neural embedding models for biomedical sentence classification
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MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data
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Capturing context-specific regulation in molecular interaction networks
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FELLA: an R package to enrich metabolomics data
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Towards practical privacy-preserving genome-wide association study
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NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors
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Protein complexes identification based on go attributed network embedding
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iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
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Measures of co-expression for improved function prediction of long non-coding RNAs
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GLUE: a flexible software system for virus sequence data
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NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing
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Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency
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Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps
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Towards a supervised classification of neocortical interneuron morphologies
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PASNet: pathway-associated sparse deep neural network for prognosis prediction from high-throughput data
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Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis
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Accelerating a cross-correlation score function to search modifications using a single GPU
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A multi-omics approach for identifying important pathways and genes in human cancer
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A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data
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VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database
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A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen
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Subject level clustering using a negative binomial model for small transcriptomic studies
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A new sequence logo plot to highlight enrichment and depletion
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BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data
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Using Kinect to classify Parkinson’s disease stages related to severity of gait impairment
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Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries
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Structure-function analysis of Sedolisins: evolution of tripeptidyl peptidase and endopeptidase subfamilies in fungi
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Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect
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Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis
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Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
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Learning the optimal scale for GWAS through hierarchical SNP aggregation
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PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data
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Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics
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Correction to: cuRnet: an R package for graph traversing on GPU
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dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions
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SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations
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COMBImage: a modular parallel processing framework for pairwise drug combination analysis that quantifies temporal changes in label-free video microscopy movies
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pyHIVE, a health-related image visualization and engineering system using Python
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Coding Prony’s method in MATLAB and applying it to biomedical signal filtering
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A statistical method to identify recombination in bacterial genomes based on SNP incompatibility
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