Machine Learning and Artificial Intelligence in Bioinformatics

ISSN: 1471-2105 (Online)

In this topical collection (197 articles)

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  1. Research article

    Identification of infectious disease-associated host genes using machine learning techniques

    Ranjan Kumar Barman, Anirban Mukhopadhyay, Ujjwal Maulik… Article:736
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  2. Research article

    Antimicrobial peptide identification using multi-scale convolutional network

    Xin Su, Jing Xu, Yanbin Yin, Xiongwen Quan, Han Zhang Article:730
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  3. Research article

    Modeling aspects of the language of life through transfer-learning protein sequences

    Michael Heinzinger, Ahmed Elnaggar, Yu Wang, Christian Dallago… Article:723
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  4. Research Article

    Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage

    Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo Article:654
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  5. Research article

    Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network

    Michael Mayers, Tong Shu Li, Núria Queralt-Rosinach, Andrew I. Su Article:653
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  6. Research Article

    Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations

    Amarin Jettakul, Duangdao Wichadakul, Peerapon Vateekul Article:627
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  7. Research article

    Deep gene selection method to select genes from microarray datasets for cancer classification

    Russul Alanni, Jingyu Hou, Hasseeb Azzawi, Yong Xiang Article:608
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  8. Research article

    The assessment of efficient representation of drug features using deep learning for drug repositioning

    Mahroo Moridi, Marzieh Ghadirinia, Ali Sharifi-Zarchi… Article:577
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  9. Research article

    iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features

    Kai-Yao Huang, Fang-Yu Hung, Hui-Ju Kao, Hui-Hsuan Lau… Article:568
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  10. Software

    PyBDA: a command line tool for automated analysis of big biological data sets

    Simon Dirmeier, Mario Emmenlauer, Christoph Dehio, Niko Beerenwinkel Article:564
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  11. Software

    MiPepid: MicroPeptide identification tool using machine learning

    Mengmeng Zhu, Michael Gribskov Article:559
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  12. Research article

    Employing phylogenetic tree shape statistics to resolve the underlying host population structure

    Hassan W. Kayondo, Alfred Ssekagiri, Grace Nabakooza, Nicholas Bbosa… Article:546
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  13. Research article

    Improving biomedical named entity recognition with syntactic information

    Yuanhe Tian, Wang Shen, Yan Song, Fei Xia, Min He, Kenli Li Article:539
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  14. Software

    The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data

    Giulio Caravagna, Guido Sanguinetti, Trevor A. Graham… Article:531
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  15. Methodology Article

    A hierarchical integration deep flexible neural forest framework for cancer subtype classification by integrating multi-omics data

    Jing Xu, Peng Wu, Yuehui Chen, Qingfang Meng, Hussain Dawood… Article:527
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  16. Research Article

    Network inference with ensembles of bi-clustering trees

    Konstantinos Pliakos, Celine Vens Article:525
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  17. Software

    Deep learning based DNA:RNA triplex forming potential prediction

    Yu Zhang, Yahui Long, Chee Keong Kwoh Article:522
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  18. Research article

    MIC_Locator: a novel image-based protein subcellular location multi-label prediction model based on multi-scale monogenic signal representation and intensity encoding strategy

    Fan Yang, Yang Liu, Yanbin Wang, Zhijian Yin, Zhen Yang Article:522
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  19. Methodology Article

    Comprehensive ensemble in QSAR prediction for drug discovery

    Sunyoung Kwon, Ho Bae, Jeonghee Jo, Sungroh Yoon Article:521
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  20. Research article

    Quantitative Structure–Mutation–Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction

    Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat… Article:520
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