Structural analysis

ISSN: 1471-2105 (Online)

In this topical collection (348 articles)

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  1. Methodology article

    Benchmarking the PEPOP methods for mimicking discontinuous epitopes

    Vincent Demolombe, Alexandre G. de Brevern, Franck Molina… Article:738
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  2. Database

    HKPocket: human kinase pocket database for drug design

    Huiwen Wang, Jiadi Qiu, Haoquan Liu, Ying Xu, Ya Jia, Yunjie Zhao Article:617
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  3. Methodology article

    A general-purpose signal processing algorithm for biological profiles using only first-order derivative information

    Yuanjie Liu, Jianhan Lin Article:611
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  4. Research article

    Identification of native protein structures captured by principal interactions

    Mehdi Mirzaie Article:604
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  5. Research article

    Prediction of RNA secondary structure by maximizing pseudo-expected accuracy

    Michiaki Hamada, Kengo Sato, Kiyoshi Asai Article:586
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  6. Methodology article

    An automated protocol for modelling peptide substrates to proteases

    Rodrigo Ochoa, Mikhail Magnitov, Roman A. Laskowski, Pilar Cossio… Article:586
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  7. Methodology article

    Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction

    Youngmahn Han, Dongsup Kim Article:585
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  8. Methodology Article

    CSmetaPred: a consensus method for prediction of catalytic residues

    Preeti Choudhary, Shailesh Kumar, Anand Kumar Bachhawat… Article:583
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  9. Methodology Article

    fDETECT webserver: fast predictor of propensity for protein production, purification, and crystallization

    Fanchi Meng, Chen Wang, Lukasz Kurgan Article:580
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  10. Research article

    Sampling the conformation of protein surface residues for flexible protein docking

    Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nina Amenta… Article:575
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  11. Research article

    Knowledge-based biomedical word sense disambiguation: comparison of approaches

    Antonio J Jimeno-Yepes, Alan R Aronson Article:569
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  12. Research article

    Peptide binding predictions for HLA DR, DP and DQ molecules

    Peng Wang, John Sidney, Yohan Kim, Alessandro Sette, Ole Lund… Article:568
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  13. Methodology article

    The LabelHash algorithm for substructure matching

    Mark Moll, Drew H Bryant, Lydia E Kavraki Article:555
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  14. Methodology article

    Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces

    Hanka Venselaar, Tim AH te Beek, Remko KP Kuipers… Article:548
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  15. software

    UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data

    Rafal Adamczak, Jarek Meller Article:546
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  16. Methodology article

    Bioactive conformational generation of small molecules: A comparative analysis between force-field and multiple empirical criteria based methods

    Fang Bai, Xiaofeng Liu, Jiabo Li, Haoyun Zhang, Hualiang Jiang… Article:545
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  17. Research article

    Degeneracy and genetic assimilation in RNA evolution

    Reza Rezazadegan, Christian Reidys Article:543
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  18. Research Article

    Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction

    Yuangen Yao, Rong Gui, Quan Liu, Ming Yi, Haiyou Deng Article:542
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  19. Methodology Article

    Predicting protein inter-residue contacts using composite likelihood maximization and deep learning

    Haicang Zhang, Qi Zhang, Fusong Ju, Jianwei Zhu, Yujuan Gao… Article:537
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  20. Research article

    Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots

    Jérôme Gracy, Laurent Chiche Article:535
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