Abstract
The conversion of biomass into ethanol using fast, cheap, and efficient methodologies to disintegrate and hydrolyse the lignocellulosic biomass is the major challenge of the production of the second-generation ethanol. This revision describes the most relevant advances on the conversion process of lignocellulose materials into ethanol, development of new xylose-fermenting strains of Saccharomyces cerevisiae using classical and modern genetic tools and strategies, elucidation of the expression of some complex industrial phenotypes, tolerance mechanisms of S. cerevisiae to lignocellulosic inhibitors, monitoring and strategies to improve fermentation processes. In the last decade, numerous engineered pentose-fermenting yeasts have been developed using molecular biology tools. The increase in the tolerance of S. cerevisiae to inhibitors is still an important issue to be exploited. As the industrial systems of ethanol production operate under non-sterile conditions, microbial subpopulations are generated, depending on the operational conditions and the levels of contaminants. Among the most critical requirements for production of the second-generation ethanol is the reduction in the levels of toxic by-products of the lignocellulosic hydrolysates and the production of low-cost and efficient cellulosic enzymes. A number of procedures have been established for the conversion of lignocellulosic materials into ethanol, but none of them are completely satisfactory when process time, costs, and efficiency are considered.
Similar content being viewed by others
References
Sun, Y., & Cheng, J. (2002). Bioresource Technology, 83, 1–11.
Mussatto, S. I., Dragone, G., Guimarães, P. M. R., Silva, J. P. A., Carneiro, L. M., Roberto, I. C., et al. (2010). Biotechnology Advances, 28, 817–830.
Hendriks, A. T. W. M., & Zeeman, G. (2009). Bioresource Technology, 100, 10–18.
Margeot, A., Hahn-Hagerdal, B., Edlund, M., Slade, R., & Monot, F. (2009). Current Opinion in Biotechnology, 20, 372–380.
Gírio, F. M., Fonseca, C., Carvalheiro, F., Duarte, L. C., Marques, S., & Bogel-Lukasik, R. (2010). Bioresource Technology, 101, 4775–4800.
Zhao, X., Cheng, K., & Liu, D. (2009). Applied Microbiology and Biotechnology, 82, 815–827.
Kumar, P., Barrett, D. M., Delwiche, M. J., & Stroeve, P. (2009). Industrial and Engineering Chemistry Research, 48, 3713–3729.
Yang, B., & Wyman, C. E. (2008). Biofuels, Bioproducts and Biorefining, 2, 26–40.
Hamelinck, C. N., van Hooijdonk, G., & Faaij, A. P. C. (2005). Biomass and Bioenergy, 28, 384–410.
Carvalheiro, F., Duarte, L. C., & Gírio, F. M. (2008). Journal of Scientific and Industrial Research, 67, 849–864.
Iranmahboob, J., Nadim, F., & Monemi, S. (2002). Biomass and Bioenergy, 22, 401–404.
Rossell, C. E. V., Lahr Filho, D., Hilst, A. G. P., & Leal, M. R. L. V. (2005). International Sugar Journal, 107, 192–195.
Taherzadeh, M., & Karimi, K. (2007). BioResources, 2, 472–499.
Gregg, D. J., & Saddler, J. N. (1996). Biotechnology and Bioengineering, 51, 375–383.
Gautam, S. P., Bundela, P. S., Pandey, A. K., Khan, J., Awasthi, M. K., & Sarsaiya, S. (2011). Biotechnology Research International. doi:10.4061/2011/810425.
Stambuk, B. U., Eleutherio, E. C. A., Florez-Pardo, L. M., Souto-Maior, A. M., & Bom, E. P. S. (2008). Journal of Scientific and Industrial Research, 67, 918–926.
Slininger, P. J., Bolen, P. L., & Kurztman, C. P. (1987). Enzyme and Microbial Technology, 9, 5–15.
Olsson, L., & Hahn-Hägerdal, B. (1996). Enzyme and Microbial Technology, 18, 312–331.
Lynd, L. R., Weimer, P. J., van Zyl, W. H., & Pretorius, I. S. (2002). Microbiology and Molecular Biology Reviews, 66, 506–577.
Bothast, R. J., Nichols, N. N., & Dien, B. S. (1999). Biotechnology Progress, 15, 867–875.
Dien, B. S., Cotta, M. A., & Jeffries, T. W. (2003). Applied Microbiology and Biotechnology, 63, 258–266.
Lau, M. W., Gunawan, C., Balan, V., & Dale, B. E. (2010). Biotechnology for Biofuels, 3, 11–15.
Xu, Q., Singh, A., & Himmel, M. E. (2009). Current Opinion in Biotechnology, 20, 364–371.
Panagiotou, G., Villas-Bôas, S. G., Christakopoulos, P., Nielsen, J., & Olsson, L. (2005). Journal of Biotechnology, 115, 425–434.
Olsson, L., & Hahn-Hägerdal, B. (1993). Process Biochemistry, 28, 249–257.
Jones, D. T., Shirley, M., Wu, X., & Keis, S. (2000). Journal of Molecular Microbiology and Biotechnology, 2, 21–26.
Los, M., Golec, P., Los, J. M., Weglewska-Jurkiewicz, A., Czyz, A., Wegrzyn, A., et al. (2007). BMC Biotechnology, 7, 13–18.
Lee, W.-J., Kim, M.-D., Ryu, Y.-W., Bisson, L. F., & Seo, J.-H. (2002). Applied Microbiology and Biotechnology, 60, 186–191.
Sedlak, M., & Ho, N. W. Y. (2004). Yeast, 21, 671–684.
Runquist, D., Hahn-Hägerdal, B., & Radstrom, P. (2010). Biotechnology for Biofuels, 3, 5–11.
Leandro, M. J., Fonseca, C., & Gonçalves, P. (2009). FEMS Yeast Research, 9, 511–525.
Matsushika, A., Inoue, H., Kodaki, T., & Sawayama, S. (2009). Applied Microbiology and Biotechnology, 84, 37–53.
Chandel, A. K., Chandrasekhar, G., Radhika, K., Ravinder, R., & Ravindra, P. (2011). Biotechnology and Molecular Biology Review, 6, 8–20.
Toivari, M. H., Aristidou, A., Rouhonen, L., & Penttilä, M. (2001). Metabolic Engineering, 3, 236–249.
Toivari, M. H., Salusjârvi, L., Rouhonen, L., & Penttilä, M. (2004). Applied and Environmental Microbiology, 70, 3681–3686.
Verho, R., Londesborough, J., Penttilã, M., & Richard, P. (2003). Environmental Microbiology, 69, 5892–5897.
Wisselink, H. W., Toirkens, M. J., Wu, Q., Pronk, J. T., & van Maris, A. J. A. (2009). Applied and Environmental Microbiology, 75, 907–914.
Bettiga, M., Bengtsson, O., Hahn-Hägerdal, B., & Gorwa-Grauslund, M. F. (2009). Microbial Cell Factories, 8, 40–51.
Mortimer, R. K. (2000). Genome Research, 10, 403–409.
Amorim, H. V., Lopes, M. L., Oliveira, J. V. C., Buckeridge, M. S., & Godman, G. H. (2011). Applied Microbiology and Biotechnology, 91, 1267–1275.
Souza, C. S., Thomaz, D., Cides, E. R., Oliveira, K. F., Tognoli, J. O., & Laluce, C. (2007). World Journal of Microbiology and Biotechnology, 23, 1667–1677.
Basso, L. C., Amorim, H. V., Oliveira, A. J., & Lopes, M. L. (2008). FEMS Yeast Research, 8, 1155–1163.
Nevoigt, E. (2008). Microbiology and Molecular Biology Reviews, 72, 379–412.
Patnaik, R. (2008). Biotechnology Progress, 24, 38–47.
Karagüler, N. G., Sessions, R. B., Binay, B., Ordu, E. B., & Clarke, A. R. (2007). Biochemical Society Transactions, 35, 1610–1615.
Schuster, S., Dandekar, T., & Fell, D. A. (1999). Trends in Biotechnology, 17, 53–60.
Bailey, J. E., Sburlati, A., Hatzimanikatis, V., Lee, K., Renner, W. A., & Tsai, P. S. (2002). Biotechnology and Bioengineering, 79, 568–579.
Lee, S. K., Chou, H., Ham, T. S., Lee, T. S., & Keasling, J. D. (2008). Current Opinion in Biotechnology, 19, 556–563.
Jeffries, T. W. (2006). Current Opinion in Biotechnology, 17, 320–326.
Gong, J., Zheng, H., Wu, Z., Chen, T., & Zhao, X. (2009). Biotechnology Advances, 27, 996–1005.
Alper, H., & Stephanopoulos, G. (2007). Metabolic Engineering, 9, 258–267.
Sauer, U. (2001). Advances in Biochemical Engineering. Biotechnology, 73, 130–166.
Araya, C. L., Payen, C., Dunhum, M. J., & Fields, S. (2010). BMC Genomics, 11, 88–98.
Shi, D., Wang, C., & Wang, K. (2009). Journal of Industrial Microbiology and Biotechnology, 36, 139–147.
Hou, L. (2009). Biotechnology Letters, 31, 671–677.
Zeyl, C. (2004). Research in Microbiology, 155, 217–223.
Wisselink, H. W., Toirkens, M. J., del Rosario Franco Berriel, M., Winkler, A. A., van Dijken, J. P., Pronk, J. T., et al. (2007). Applied and Environmental Microbiology, 73, 4881–4891.
Bettiga, M., Hahn-Hägerdal, B., & Gorwa-Grauslund, M. F. (2008). Biotechnology for Biofuels, 1, 16–23.
Sonderegger, M., & Sauer, U. (2003). Applied and Environmental Microbiology, 69, 1990–1998.
Liu, H., Yan, M., Lai, C., Xu, L., & Ouyang, P. (2010). Applied Biochemistry and Biotechnology, 160, 574–582.
Young, E., Lee, S. M., & Alper, H. (2010). Biotechnology for Biofuels, 3, 24–35.
Krahulec, S., Petschacher, B., Wallner, M., Longus, K., Klimacek, M., & Nidetzky, B. (2010). Microbial Cell Factories, 9, 16–29.
Verduyn, C., van Kleef, R., Frank, J., Schreuder, H., van Dijken, J., & Scheffers, A. (1985). Biochemical Journal, 226, 669–677.
Jeffries, T. W. (1985). Trends in Biotechnology, 3, 208–212.
Watanabe, S., Saleh, A. A., Pack, S. P., Annaluru, N., Kodaki, T., & Makino, K. (2007). Microbiology, 153, 3044–3054.
Almeida, J. R. M., Modig, T., Petersson, A., Hahn-Hägerdal, B., Lidén, G., & Gorwa-Grauslund, M. F. (2007). Journal of Chemical Technology and Biotechnology, 82, 340–349.
Parawira, W., & Tekere, M. (2011). Critical Reviews in Biotechnology, 31, 20–31.
Mashego, M. R., Jansen, M. L. A., Vinke, J. L., van Gulik, W. M., & Heijnen, J. J. (2005). FEMS Yeast Research, 5, 419–430.
Heer, D., & Sauer, U. (2008). Microbial Biotechnology, 1, 497–506.
Liu, Z. L., Slininger, P. J., & Gorsich, S. W. (2005). Applied Biochemistry and Biotechnology, 121–124, 451–460.
Almeida, J. R. M., Bertilsson, M., Gorwa-Grauslund, M. F., Gorsich, S., & Lidén, G. (2009). Applied Microbiology and Biotechnology, 82, 625–638.
Giannattasio, S., Guaragnella, N., Corte-Real, M., Passarela, S., & Marra, E. (2005). Gene, 354, 93–98.
Vanderbergh, P. A. (1993). FEMS Microbiology Reviews, 12, 221–237.
Heyland, J., Fu, J., & Blank, L. M. (2009). Microbiology, 155, 3827–3837.
Bellissimi, E., van Dijken, J. P., Pronk, J. T., & van Maris, A. J. A. (2009). FEMS Yeast Research, 9, 358–364.
Casey, E., Sedlak, M., Ho, N. W. Y., & Mosier, N. S. (2010). FEMS Yeast Research, 10, 385–393.
Mira, N. P., Palma, M., Guerreiro, J. F., & Sá-Correia, I. (2010). Microbial Cell Factories, 9, 79–91.
Araya-Secchi, R., Garate, J. A., Holmes, D. S., & Perez-Acle, T. (2011). BMC Genomics, 12(Suppl 4), S8.
Zhang, J. G., Liu, X. Y., He, X. P., Guo, X. N., Lu, Y., & Zhang, B. (2011). Biotechnology Letters, 33, 277–284.
Mira, N. P., Becker, J. D., & Sá-Correia, I. (2010). OMICS, 14, 587–601.
Mira, N. P., Teixeira, M. C., & Sá-Correia, I. (2010). OMICS, 14, 525–540.
Wright, J., Bellisimi, E., Hulster, E., Wagner, A., Pronk, J., & van de Maris, A. J. A. (2011). FEMS Yeast Research, 11, 299–306.
Du, L., Su, Y., Sun, D., Zhu, W., Wang, J., Zhuang, X., et al. (2008). FEMS Yeast Research, 8, 531–539.
Tsiatsiani, L., van Breusegem, F., Gallois, P., Zavialov, A., Lam, E., & Bozhkov, P. V. (2011). Cell Death and Differentiation, 18, 1279–1288.
Madeo, F., Herker, E., Maldener, C., Wissing, S., Lächelt, S., Herlan, M., et al. (2002). Molecular Cell, 9, 911–917.
Overkamp, K. M., Kötter, P., van der Hoek, R., Schoondermark-Stolk, S., Luttik, M. A. H., et al. (2002). Yeast, 19, 509–520.
Geertman, J. M. A., van Dijken, J. P., & Pronk, J. T. (2006). FEMS Yeast Research, 6, 1193–1203.
Salmon, T. B., Evert, B. A., Song, B., & Doetsch, P. W. (2004). Nucleic Acids Research, 32, 3712–3723.
Perrone, G. G., Tan, S. X., & Dawes, I. W. (2008). Biochimica et Biophysica Acta, 1783, 1354–1368.
Carmona-Gutierrez, D., Eisenberg, T., Büttner, S., Meisinger, C., Kroemer, G., & Madeo, F. (2010). Cell Death and Differentiation, 17, 763–773.
Park, S., Koo, H. M., Park, Y. K., Park, S. M., Park, J. C., Lee, O., et al. (2011). Bioresource Technology, 102, 6033–6038.
Heer, D., Heine, D., & Sauer, U. (2009). Applied and Environmental Microbiology, 75, 7631–7638.
Lin, F. M., Qiao, B., & Yuan, Y. J. (2009). Applied and Environmental Microbiology, 75, 3765–3776.
Larsson, S., Quintana-Sáinz, A., Reimann, A., Nilvebrant, N. O., & Jönsson, L. J. (2000). Applied Biochemistry and Biotechnology, 84–86, 617–632.
Alriksson, B., Horváth, I. S., & Jönsson, L. J. (2010). Process Biochemistry, 45, 264–271.
Klinke, H. B., Thomsen, A. B., & Ahring, B. K. (2004). Applied Microbiology and Biotechnology, 66, 10–26.
Endo, A., Nakamura, T., & Shima, J. (2009). FEMS Microbiology Letters, 299, 95–99.
Endo, A., Nakamura, T., Ando, A., Tokuyasu, K., & Shima, J. (2008). Biotechnology for Biofuels, 1, 3–9.
Ji, L., Shen, Y., Xu, L., Peng, B., Xiao, Y., & Bao, X. (2011). Bioresource Technology, 102, 8105–8109.
Larsson, S., Cassland, P., & Jönsson, L. J. (2011). Applied and Environmental Microbiology, 67, 1163–1170.
Ding, J., Huang, X., Zhang, L., Zhao, N., Yang, D., et al. (2009). Applied Microbiology and Biotechnology, 85, 253–263.
Auesukaree, C., Damnernsawad, A., Kruatrachue, M., Pokethitiyook, P., Boonchird, C., Kaneko, Y., et al. (2009). Journal of Applied Genetics, 50, 301–310.
Snowdon, C., Schierholtz, R., Poliszczuk, P., Hughes, S., & van der Merwe, G. (2009). FEMS Yeast Research, 9, 372–380.
Favale, S., Pietromarch, P., & Ciolfi, G. (2007). Vitis, 46, 39–43.
Aguilera, A., Chávez, S., & Malagón, F. (2000). Yeast, 16, 731–754.
Gabriel, A., Dapprich, J., Kunkel, M., Gresham, D., Pratt, S. C., & Dunham, M. J. (2006). PLoS Genetics, 2, 2026–2038.
Ames, R. M., Rash, B. M., Hentges, K. E., Robertson, D. L., Delneri, D., & Lovell, S. C. (2010). Genome Biology and Evolution, 2, 591–601.
Fawcett, J. A., & Innan, H. (2011). Genes, 2, 191–209.
Sniegowski, P. D., & Gerrish, P. J. (2010). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 365, 1255–1263.
Pallone, H., & Viikari, L. (2004). Biotechnology and Bioengineering, 86, 550–557.
Eijsink, V. G. H., Vaaje-Kolstad, G., Varum, K. M., & Horn, S. J. (2008). Trends in Biotechnology, 26, 228–235.
Kobayashi, H., Komanoya, T., Guha, S. K., Hara, K., & Fukuoka, A. (2011). Applied Catalysis A: General, 409–410, 13–20.
Fargues, C., Lewandowaki, R., & Lameloise, M. L. (2010). Industrial and Engineering Chemistry Research, 49, 9248–9257.
Sainio, T., Turku, I., & Heinonen, J. (2011). Bioresource Technology, 12, 6048–6057.
Dehkoda, A. (2008). Master Thesis, University College of Boras, Örnsköldsvik, Sweeden.
Jhadav, A., Vamsi, K. K., Khaimar, Y., Boraste, A., Gupta, N., et al. (2009). International Journal of Microbiology Research, 1, 9–12.
Tomás-Pejó, E., Oliva, J. M., Ballesteros, M., & Olsson, L. (2008). Biotechnology and Bioengineering, 100, 1122–1131.
Brethauer, S., & Wyman, C. E. (2010). Bioresource Technology, 101, 4862–4874.
Kim, S. R., Lee, K. S., Choi, J. H., Ha, S. J., Kweon, D. H., Seo, J. H., et al. (2010). Journal of Biotechnology, 150, 404–407.
Insa, G., Sablayrolles, J. M., & Douzal, V. (1995). Bioprocess and Biosystems Engineering, 13, 171–176.
Stanley, G. A., Douglas, N. G., Every, E. J., Tzanatos, T., & Pamment, N. B. (1993). Biotechnology Letters, 15, 1199–1204.
Zheng, D. Q., Wu, X. C., Tao, X. L., Wang, P. M., & Li, P. (2011). Bioresource Technology, 3, 3020–3027.
Pérez, F., Regodón, J. A., Valdés, M. E., de Miguel, C., & Ramírez, M. (2000). Food Microbiology, 17, 119–128.
Li, J., Zhao, J. B., Zhao, M., Yang, Y. L., Jiang, W. H., & Yang, S. (2010). Applied Microbiology, 50, 373–379.
Steen, E. J., Chan, R., Prasad, N., Myers, S., Petzold, C. J., Redding, A., et al. (2008). Microbial Cell Factories, 7, 36–43.
Wilkins, M. R., & Atiyeh, H. K. (2011). Current Opinion in Biotechnology, 22, 1–5.
Scott, S. A., Davey, M. P., Dennis, J. S., Horst, I., Howe, C. J., Lea-Smith, D. J., et al. (2010). Current Opinion in Biotechnology, 21, 277–286.
Brennan, L., & Owende, P. (2010). Renewable & Sustainable Energy Reviews, 14, 555–577.
Yan, Y., & Liao, J. C. (2009). Journal of Industrial Microbiology and Biotechnology, 36, 471–479.
Amyris: The latest on the U. C. Berkeley-spawned Agrofuel Firm 2011. Available from: www.berkeleydailyplanet.com. Accessed December 02, 2011.
Acknowledgements
The authors wish to express their gratitude to FAPESP for all the financial support given to their research on bioethanol production for so many years and particularly to the Bioenergy/FAPESP program, which has encouraged them to work on the production of bioethanol from sugarcane bagasse.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Laluce, C., Schenberg, A.C.G., Gallardo, J.C.M. et al. Advances and Developments in Strategies to Improve Strains of Saccharomyces cerevisiae and Processes to Obtain the Lignocellulosic Ethanol−A Review. Appl Biochem Biotechnol 166, 1908–1926 (2012). https://doi.org/10.1007/s12010-012-9619-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12010-012-9619-6