Abstract
We report the development of an Expressed Sequence Tag (EST) resource for the flatworm Macrostomum lignano. This taxon is of interest due to its basal placement within the flatworms. As such, it provides a useful comparative model for understanding the development of neural and sensory organization. It was anticipated on the basis of previous studies [e.g., Sánchez-Alvarado et al., Development, 129:5659–5665, (2002)] that a wide range of developmental markers would be expressed in later-stage macrostomids, and this proved to be the case, permitting recovery of a range of gene sequences important in development. To this end, an adult Macrostomum cDNA library was generated and 7,680 Macrostomum ESTs were sequenced from the 5′ end. In addition, 1,536 of these aforementioned sequences were sequenced from the 3′ end. Of the roughly 5,416 non-redundant sequences identified, 68% are similar to previously reported genes of known function. In addition, nearly 100 specific clones were obtained with potential neural and sensory function. From these data, an annotated searchable database of the Macrostomum EST collection has been made available on the web. A major objective was to obtain genes that would allow reconstruction of embryogenesis, and in particular neurogenesis, in a basal platyhelminth. The sequences recovered will serve as probes with which the origin and morphogenesis of lineages and tissues can be followed. To this end, we demonstrate a protocol for combined immunohistochemistry and in situ hybridization labeling in juvenile Macrostomum, employing homologs of lin11/lim1 and six3/optix. Expression of these genes is shown in the context of the neuropile/muscle system.
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References
Agata K (2003) Regeneration and gene regulation in planarians. Curr Opin Genet Dev 13:492–496
Arendt D, Nubler-Jung K (1999) Comparison of early nerve cord development in insects and vertebrates. Development 126: 2309–2325
Arendt D, Tessmar K, de Campos-Baptista MI, Dorresteijn A, Wittbrodt J (2002) Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria. Development 129: 1143–1154
Ax P (1996) A new approach to the phylogenetic order in nature. In: Multicellular animals, vol 1. Springer, Berlin Heidelberg New York, 225 pp
Baguñà J, Riutort M (2004).The dawn of bilaterian animals: the case of acoelomorph flatworms. Bioessays 26:1046–1057
Baguñà J, Carranza S, Paps J, Ruiz-Trillo I, Riutort M (2001) Molecular taxonomy and phylogeny of the Tricladida. In: Littlewood D, Bray RA (eds) Interrelationships of the platyhelminthes. Taylor & Francis, London, pp 49–56
Bebenek IG, Gates RD, Morris J, Hartenstein V, Jacobs DK (2004) Sine oculis in basal Metazoa. Dev Genes Evol 214: 342–351
Bertrand N, Castro DS, Guillemot F (2002) Proneural genes and the specification of neural cell types. Nat Rev Neurosci 3: 517–530
Black BL, Olson EN (1998). Transcriptional control of muscle development by myocyte enhancer factor-2 (MEF2) proteins. Annu Rev Cell Dev Biol 14:167–196
Bosch TC (2004) Control of asymmetric cell divisions: will cnidarians provide an answer? Bioessays 26:929–931
Campos-Ortega JA (1995) Genetic mechanisms of early neurogenesis in Drosophila melanogaster. Mol Neurobiol 10:75–89
Cardona A, Hartenstein V, Romero R (2005a) The embryonic development of the triclad Schmidtea polychroa. Dev Genes Evol 215:109–131
Cardona A, Fernandez J, Solana J, Romero R (2005b) An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression. Dev Genes Evol 215:482–488
Carroll TJ, Vize PD (1999) Synergism between Pax-8 and lim-1 in embryonic kidney development. Dev Biol 214:46–59
Chang T, Mazotta J, Dumstrei K, Dumitrescu A, Hartenstein V (2001) Dpp and Hh signaling in the Drosophila embryonic eye field. Development 128:4691–4704
Doe DA (1981) Comparative ultrastructure of the pharynx simplex in Turbellaria. Zoomorphology 97:133–192
Ehlers U (1985) Das phylogenetische system der Plathelminthes. Gustav Fischer Verlag Stuttgart. New York
Ehlers U (1992) No mitosis of differentiated epidermal cells in Plathelminthes: mitosis of an intraepidermal stem cell in Rhynchoscolex simplex Leidy 1851 (Catenulida). Mikrofauna Marina 7:311–321
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175–185
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8:186–194
Falkner FG, Saumweber H, Biessmann H (1981) Two Drosophila melanogaster proteins related to intermediate filament proteins of vertebrate cells. J Cell Biol 91:175–183
Fisher A, Caudy M (1998). The function of hairy-related bHLH repressor proteins in cell fate decisions. Bioessays 20:298–306
Genova JL, Fehon RG (2003) Neuroglian, Gliotactin, and the Na+/K+ ATPase are essential for septate junction function in Drosophila. J Cell Biol 161:979–989
Gregory SL, Brown NH (1998) kakapo, a gene required for adhesion between and within cell layers in Drosophila, encodes a large cytoskeletal linker protein related to plectin and dystrophin. J Cell Biol 143:1271–1282
Gubler U, Hoffman BJ (1983) A simple and very efficient method for generating cDNA libraries. Gene 25:263–269
Hartenstein V, Ehlers U (2000) The embryonic development of the rhabdocoel flatworm Mesostoma lingua. Dev Genes Evol 210:399–415
Heidenreich KA, Linseman DA (2004) Myocyte enhancer factor-2 transcription factors in neuronal differentiation and survival. Mol Neurobiol 29:155–166
Hicklin DJ, Ellis LM (2005) Role of the vascular endothelial growth factor pathway in tumor growth and angiogenesis. J Clin Oncol 23:1011–1027
Hirth F, Kammermeier L, Frei E, Walldorf U, Noll M, Reichert H (2003) An urbilaterian origin of the tripartite brain: developmental genetic insights from Drosophila. Development 130:2365–2373
Hobert O, Westphal H (2000) Functions of LIM-homeobox genes. Trends Genet 16:75–83
Holland ND (2003) Early central nervous system evolution; an era of skin brains? Nat Rev Neurosci 4: 617–627
Huang X, Madan A (1999) CAP3: A DNA sequence assembly program. Genome Res 9:868–877
Huber TL, Zon LI (1998) Transcriptional regulation of blood formation during Xenopus development. Semin Immunol 10:103–109
Ikenishi K (1998) Germ plasm in Caenorhabditis elegans, Drosophila and Xenopus. Dev Growth Differ 40:1–10
Jacobs DK, Lee SE, Dawson MN, Staton JL, Raskoff KA (1998) The history of development through the evolution of molecules: gene trees, hearts, eyes, and dorsoventral inversion. In: DeSalle R, Schierwater B (eds) Molecular Approaches to Ecology and Evolution. Birkhauser, Basel, pp 323–357
Joffe BI (1987) On the evolution of the pharynx in the flatworms (in Russian).Trudy Zoologichrskogo Instituta Akademii Nauk SSSR 221:34–71
Jondelius U, Larsson K, Raikova O (2004) Cleavage in nemertoderma westbladi (Nemertodermatida) and its phylogenetic significance. Zoomorphology 123: 221–225
Karabinos A, Schulze E, Schunemann J, Parry DA, Weber K (2003) In vivo and in vitro evidence that the four essential intermediate filament (IF) proteins A1, A2, A3 and B1 of the nematode Caenorhabditis elegans form an obligate heteropolymeric IF system. J Mol Biol 333:307–319
Kawakami K, Sato S, Ozaki H, Ikeda K (2000). Six family genes—structure and function as transcription factors and their roles in development. BioEssays 22:616–626
Ladurner P, Schaerer L, Salvenmoser W et al (2005a) A new model organism among the lower Bilateria and the use of digital microscopy in taxonomy of meiobenthic Platyhelminthes: Macrostomum lignano, n. sp (Rhabditophora, Macrostomorpha). J Zoolog Syst Evol Res 43:114–126
Ladurner P, Pfister D, Seifarth C, Scharer L, Mahlknecht M, Salvenmoser W, Gerth R, Marx F, Rieger (2005b) Production and characterisation of cell- and tissue-specific monoclonal antibodies for the flatworm Macrostomum sp. Histochem Cell Biol 123:89–104
Lane NJ (1991). Morphology of glial blood–brain barriers. Ann N Y Acad Sci 633:348–362
Lee S, Harris KL, Whitington PM, Kolodziej PA (2000) short stop is allelic to kakapo, and encodes rod-like cytoskeletal-associated proteins required for axon extension. J Neurosci 20:1096–1108
Lenz PH, Hartline DK, Davis AD (2000) The need for speed. I. Fast reactions and myelinated axons in copepods. J Comp Physiol A 186:337–345
Lichtneckert R, Reichert H (2005) Insights into the urbilaterian brain: conserved genetic patterning mechanisms in insect and vertebrate brain development. Heredity 94: 465–477
Liu IS, Chen JD, Ploder L, Vidgen D, van der Kooy D, Kalnins VI, McInnes RR (1994). Developmental expression of a novel murine homeobox gene (Chx10): evidence for roles in determination of the neuroretina and inner nuclear layer. Neuron 13:377–393
Liu Z, Friedrich M (2004) The tribolium homologue of glass and the evolution of insect larval eyes. Dev Biol 269:36–54
Lord BA, DiBona DR (1976) Role of the septate junction in the regulation of paracellular transepithelial flow. J Cell Biol 71:967–72
Morris J, Nallur R, Ladurner P, Egger B, Rieger R, Hartenstein V (2004) The embryonic development of the flatworm Macrostomum sp. Dev Gen Evol 214: 220–239
Oliver G, Mailhos A, Wehr R, Copeland NG, Jenkins NA, Gruss P. (1995) Six3, a murine homologue of the sine oculis gene, demarcates the most anterior border of the developing neural plate and is expressed during eye development. Development 121:4045–4055
Orii H, Sakurai T, Watanabe K (2005) Distribution of the stem cells (neoblasts) in the planarian Dugesia japonica. Dev Genes Evol 215:143–157
Perrone-Bizzozero N, Bolognani F (2002) Role of HuD and other RNA-binding proteins in neural development and plasticity. J Neurosci Res 68:121–126
Pichaud F, Desplan C (2002) Pax genes and eye organogenesis. Curr Opin Genet Dev 12:430–434
Pineda D, Gonzales J, Callerts P, Ikeo K, Gehring WJ, Saló E (2000) Searching for the prototypic eye genetic network: sine oculis is essential for eye regeneration in planarians. Proc Natl Acad Sci USA 97:4525–4529
Radojcic T, Pentreath VW (1979) Invertebrate glia. Prog Neurobiol 12:115–179
Raikova O, Reuter M, Gustafsson M (2004) Basiepidermal nervous system in Nemertoderma westbladi (Nemertodermatida): GYIRFamide immunoreactivity. Zoology 107:75–86
Reddien PW, Sanchez Alvarado A (2004) Fundamentals of planarian regeneration. Annu Rev Cell Dev Biol 20:725–757
Reichert H (2002) Conserved genetic mechanisms for embryonic brain patterning. Int J Dev Biol 46:81–87
Reuter M, Halton DW (2001) Comparative neurobiology of Platyhelminthes. In: Littlewood D, Bray RA (eds) “Interrelationships of the Platyhelminthes”. Taylor & Francis, London, pp 231–238
Reuter M, Raikova O, Gustafsson M (2001a) Patterns in the nervous and muscle systems in lower flatworms. Belg J Zool 131:47–53 (Supp1)
Reuter M, Raikova O, Jondelius U (2001b) Organisation of the nervous system in the Acoela: an immunocytochemical study. Tissue Cell 33:119–128
Rieger RM, Tyler S, Smith III JPS, Rieger GE (1991) Platyhelminthes: Turbellaria. In: Harrison FW, Bogitsh BJ (eds) Microscopic anatomy of invertebrates, vol. 3. Wiley–Liss, New York
Rieger RM (2001) Phylogenetic systematics of the Macrostomorpha. In: Littlewood D, Bray RA (eds) Interrelationships of the platyhelminthes. Taylor & Francis, London, pp 28–38
Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W et al (2000) Comparative genomics of the eukaryotes. Science 287:2204–2215
Ruiz-Trillo I, Riutort M, Littlewood DTJ, Herniou EA, Baguñà J (1999) Acoel flatworms: earliest extant bilaterian metazoans, not members of platyhelminthes. Science 283:1919–1923
Saló E, Baguñà J (2002) Regeneration in planarians and other worms: new findings, new tools, and new perspectives. J Exp Zool 292:528–539
Sánchez-Alvarado A, Newmark PA, Robb SM, Juste R (2002) The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration. Development 129:5659–5665
Sarafi-Reinach TR, Melkman T, Hobert O, Sengupta P (2001) The lin-11 LIM homeobox gene specifies olfactory and chemosensory neuron fates in C. elegans. Development 128: 3269–3281
Schonemann MD, Ryan AK, Erkman L, McEvilly RJ, Bermingham J, Rosenfeld MG (1998) POU domain factors in neural development. Adv Exp Med Biol 449:39–53
Shawlot W, Behringer RR (1995) Requirement for Lim1 in head-organizer function. Nature 374:425–430
Shivdasani RA (2002). Molecular regulation of vertebrate early endoderm development. Dev Biol 249:191–203
Taira M, Otani H, Jamrich M, Dawid IB (1994) Expression of the LIM class homeobox gene Xlim-1 in pronephros and CNS cell lineages of Xenopus embryos is affected by retinoic acid and exogastrulation. Development 120:1525–1536
Takahashi T, Hatta M, Yum S, Gee L, Ohtani M, Fujisawa T, Bode HR (2005). Hym-301, a novel peptide, regulates the number of tentacles formed in hydra. Development 132:2225–2234
Telford MJ, Wise MJ, Gowri-Shankar V (2005) Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the Bilateria. Mol Biol Evol 22:1129–1136
Tepass U, Truong K, Godt D, Ikura M, Peifer M (2000) Cadherins in embryonic and neural morphogenesis. Nat Rev Mol Cell Biol 1:91–100
Thomas MB (1986) Embryology of the turbellaria and its phylogenetic significance. Hydrobiologia 132:105–115
Thor S, Thomas J (2002) Motor neuron specification in worms, flies and mice: conserved and ‘lost’ mechanisms. Curr Opin Genet Dev 12: 558–564
Torrado M, Mikhailov A (2000) Frog Lim-1-like protein Is expressed predominantly in the nervous tissue, gonads, and early embryos of the bivalve mollusc Mytilus galloprovincialis. Biol Bull 199:29–40
Tyler S (2001) The early worm—origins and relationships of the lower flatworms. In: Littlewood D, Bray RA (eds) “Interrelationships of the Platyhelminthes”. Taylor & Francis, London, pp 3–12
Wada H, Saiga H, Satoh N, Holland PW (1998). Tripartite organization of the ancestral chordate brain and the antiquity of placodes: insights from ascidian Pax-2/5/8, Hox and Otx genes. Development 125: 1113 –1122
Wang J, Karabinos A, Zimek A, Meyer M, Riemer D, Hudson C, Lemaire P, Weber K (2002) Cytoplasmic intermediate filament protein expression in tunicate development: a specific marker for the test cells. Eur J Cell Biol 81:302–311
Weaver DJ, Viancour TA (1991) The crayfish neuronal cytoskeleton: an investigation of proteins having neurofilament-like immunoreactivity. Brain Res 544:49–58
Westheide W, Rieger R (eds) (1996) Spezielle Zoologie. Gustav Fischer, Stuttgart Jena New York
Younossi-Hartenstein A, Hartenstein V (2000a) Comparative approach to developmental analysis: the case of the dalyellid flatworm, Gieysztoria superba. Int J Dev Biol 44: 499–506
Younossi-Hartenstein A, Hartenstein V (2000b) The embryonic development of the polyclad flatworm Imgogine mcgrathi. Dev Genes Evol 210:383–398
Younossi-Hartenstein A, Hartenstein V (2001) The embryonic development of the temnocephalid flatworms Craspedella pedum and Diceratocephala sp. Cell Tissue Res 304:295–310
Acknowledgements
This work was supported by NSF Grant IBN-0110718 to V.H., FWF Grants P15204 and 16618 to R.M.R. and the Graduate Student Training Fellowship GM0718 to J.M.
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Morris, J., Ladurner, P., Rieger, R. et al. The Macrostomum lignano EST database as a molecular resource for studying platyhelminth development and phylogeny. Dev Genes Evol 216, 695–707 (2006). https://doi.org/10.1007/s00427-006-0098-z
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DOI: https://doi.org/10.1007/s00427-006-0098-z