Abstract
A differential expression study on the Saccharum spp.–Sporisorium scitamineum pathogenic interaction was carried out in the susceptible Ja60-5 and the resistant M31/45 genotypes. Using cDNA-AFLP analysis, a total of 64 transcript-derived fragments (TDFs) was found to be differentially expressed, with the majority (67.2%) of the differential TDFs up-regulated in the resistant M31/45 cultivar. The plant response against S. scitamineum infection was complex, representing major genes involved in oxidative burst, defensive response, ethylene and auxins pathways during the first 72 h post-inoculation. Results obtained suggest a key role for genes involved in the oxidative burst and the lignin pathways in the initial sugarcane defense against the S. scitamineum infection.
Similar content being viewed by others
References
Aitken KS, Jackson PA, McIntyre CL (2005) Combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar. Theor Appl Genet 110:789–801
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402
Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55:373–399
Arencibia A, Vinagre F, Estevez Y, Bernal A, Perez J, Cavalcanti J, Santana I, Hemerly A (2006) Gluconoacetobacter diazotrophicus elicitate a sugarcane defense response against the patogenic bacteria Xanthomonas albilineans. Plant Signal Behav 1(5):265–273
Asai T, Stone JM, Heard JE, Kovtun Y, Yorgey P, Sheen J, Ausubel FM (2000) Fumonisin B1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways. Plant Cell 12:1823–1836
Bachem CWB, van der Hoeven RS, Lucker J, Oomen RJF, Casarini E, Jacobsen E, Visser RGF (2000) Functional genomic analysis of potato tuber life-cycle. Potato Res 43:297–312
Berrocal-Lobo M, Molina A, Solano R (2002) Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. Plant J 29:23–32
Borras O, Thomma BPHJ, Carmona E, Borroto CJ, Pujol M, Arencibia A, Lopez J (2005) Identification of sugarcane genes induced in disease-resistant somaclones upon inoculation with Ustilago scitaminea or Bipolaris sacchari. Plant Physiol Biochem 43:1115–1121
Cao Y, Wu Y, Zheng Z, Song F (2006) Overexpression of the rice EREBP-like gene OsBIERF3 enhances disease resistance and salt tolerance in transgenic tobacco. Physiol Mol Plant Pathol 67:202–211
Carmona E, Vargas D, Borroto C J, Lopez J, Fernández AI, Arencibia A, Borras O (2004) cDNA-AFLP analysis of differential gene expression during sugarcane –Puccinia melanocephala interaction. Plant Breeding 123:499–501
Cavalcante JJ, Vargas C, Nogueira EM, Vinagre F, Schwarcz K, Baldani JI, Ferreira PC, Hemerly AS (2007) Members of the ethylene signaling pathway are regulated in sugarcane during the association with nitrogen-fixing endophytic bacteria. J Exp Bot 58:673–686
Cona A, Rea G, Angelini R, Federico R, Tavladoraki P (2006) Functions of amine oxidases in plant development and defence. Trends Plant Sci 11:80–88
De Paepe A, Vuylsteke M, Van Hummelen P, Zabeau M, Van Der Straeten D (2004) Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. Plant J 39:537–559
Del Río LA, Sandalio LM, Corpas FJ, Palma JM, Barroso JB (2006) Reactive oxygen species and reactive nitrogen species in peroxisomes. Production, scavenging, and role in cell signaling. Plant Physiol 141:330–335
Després C, DeLong C, Glaze S, Liu E, Fobert PR (2000) The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors. Plant Cell 12:279–290
Eulgem T, Rushton PJ, Robatzek S, Somssich IE (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci 5:199–206
Fiehn O, Kloska S, Altmann T (2001) Integrated studies on plant biology using multiparallel techniques. Curr Opin Biotechnol 12:82–86
Greenberg JT, Silverman FP, Liang H (2000) Uncoupling salicylic acid-dependent cell death and defense-related responses from disease resistance in the Arabidopsis mutant acd5. Genetics 156:341–350
Lambais M (2001) In silico differential display of defense-related expressed sequence tags from sugarcane tissues infected with diazotrophic endophytes. Genetics Mol Biol 24:103–111
Li J, Zhang Z-G, Ji R, Wang Y-C, Zheng X-B (2006) Hydrogen peroxide regulates elicitor PB90-induced cell death and defense in non-heading Chinese cabbage. Physiol Mol Plant Pathol 67:220–230
Legaz ME, de Armas R, Piñon D, Vicente C (1998) Relationships between phenolics-conjugated polyamines and sensitivity of sugarcane to smut (Ustilago scitaminea), J Exp Bot 49:1723–1728
McDowell JM, Dangl JL (2000) Signal transduction in the plant immune response. Trends Biochem Sci 25:79–82
Millanes AM, Fontaniella B, Legaz ME, Vicente C (2005) Glycoproteins from sugarcane plants regulate cell polarity of Ustilago scitaminea teliospores. J Plant Physiol 162:253–265
Nogueira EM, Vinagre F, Masuda HP, Vargas C, Padua VLM, Silva FR, Santos RV, Baldani JI, Ferreira PCG, Hemerly AS (2001) Expression of sugarcane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans. Genetics Mol Biol 24:199–206
Pierik R, Tholen D, Poorter H, Visser EJW, Voesenek LACJ (2006) The Janus face of ethylene: growth inhibition and stimulation. Trends Plant Sci 11:176–183
Piñon D, de-Armas R, Vicente C, Legaz ME (1999) Role of polyamines in the infection of sugarcane buds by Ustilago scitaminea spores. Plant Physiol Bioch 37:57–64
Raboin LM, Oliveira KM, Lecunff L, Telismart H, Roques D, Butterfield JM, Hoarau Y, D’Hont A (2006) Genetic mapping in sugarcane, a high polyploid, using bi-parental progeny: identification of a gene controlling stalk colour and a new rust resistance gene. Theor Appl Genet 112:1382–1391
Reijans M, Lascaris R, Groeneger AO (2003) Quantitative comparison of cDNA-AFLP, microarrays, and GeneChip expression data in Saccharomyces cerevisiae. Genomics 82:606–618
Rodriguez E, LaO M, Gago S, Espino A, Acevedo R, Muñiz Y (2001) Razas patogénicas del carbón de la caña de azúcar en Cuba. CubaAzúcar 31:34–38
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York
Singh KB, Foley RC, Onate-Sanchez L (2002) Transcription factors in plant defense and stress responses. Curr Opin Plant Biol 5:430–436
Takemoto D, Hardham AR (2004) The cytoskeleton as a regulator and target of biotic interactions in plants. Plant Physiol 136:3864–3876
Thokoane LN, Rutherford RS (2001) cDNA-AFLP differential display of sugarcane (Saccharum spp, hybrids) genes induced by challenge with the fungal pathogen Ustilago scitaminea (sugarcane smut). Proc S Afr Sug Technol Ass 75:104–107
Torres M, Jones JDG, Dangl JL (2006) Reactive oxygen species signaling in response to pathogens. Plant Physiol 141:373–378
Van Breusegem F, Dat JF (2006) Reactive oxygen species in plant cell death. Plant Physiol 141:384–390
Van Loon LC, Geraats BPJ, Linthorst HJM (2006) Ethylene as a modulator of disease resistance in plants. Trends Plant Sci 11:184–191
Wang J, Higgins VJ (2006) Nitric oxide modulates H2O2-mediated defenses in the Colletotrichum coccodes–tomato interaction. Physiol Mol Plant Pathol 67:131–137
Wu K-L, Guo Z-J, Wang H-H, Li J (2005) The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res 12:9–26
Acknowledgments
To Barbara Randolph-Anderson PhD (Minneapolis, USA) and Maribel Alvarez PhD (University of Arizona, USA) for improve the language and the manuscript revision. Thank to the anonymous referees for their useful critical.
Author information
Authors and Affiliations
Corresponding author
Additional information
Communicated by P. Lakshmanan.
Rights and permissions
About this article
Cite this article
LaO, M., Arencibia, A.D., Carmona, E.R. et al. Differential expression analysis by cDNA-AFLP of Saccharum spp. after inoculation with the host pathogen Sporisorium scitamineum . Plant Cell Rep 27, 1103–1111 (2008). https://doi.org/10.1007/s00299-008-0524-y
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00299-008-0524-y