Abstract
To feed the increasing population of the world farmers and the crop growers rely on the use of synthetic chemicals as pesticide and fertilizer for the enhancement of soil nutrition, pest and disease management of the crops to increase the yield. However, these synthetic chemicals further aggregate the existing problem of environmental contamination, food safety, and are more harmful to the entire ecosystem. Owing to the ability to promote the growth and development of the plant and protection against various stresses and diseases the only technology to meet all the challenges is the use of beneficial microorganisms. Recently the development of fungi as the biocontrol agents and biofertilizers is increasing rapidly among the scientific community. Fungi such as Arbuscular mycorrhiza, Piriformospora indica, Penicillium, and various others have proved to play a beneficial role in nutrition enhancement, phosphate solubilization, and protection against various stresses by establishing a symbiotic relationship with the host plants. Several fungi are mass produced and commercially available in the market to promote the growth and development of plant as well as to increase the plant defense mechanism. This chapter focuses on various fungal communities that play a significant role in the overall growth and yield of the crop.
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References
Abadi VAJM, Sepehri M (2016) Effect of Piriformospora indica and Azotobacter chroococcum on mitigation of zinc deficiency stress in wheat (Triticum aestivum L.). Symbiosis 69:9–19. https://doi.org/10.1007/s13199-015-0361-z
Abdel Latef AAH, Chaoxing H (2014) Does inoculation with Glomus mosseae improve salt tolerance in pepper plants? J Plant Growth Regul 33:644–653. https://doi.org/10.1007/s00344-014-9414-4
Adholeya A, Tiwari P, Singh R (2005) Large-scale inoculum production of arbuscular mycorrhizal fungi on root organs and inoculation strategies. Vitr Cult Mycorrhizas 4:315–338. https://doi.org/10.1007/3-540-27331-x_17
Ahmed H, Strub C, Hilaire F, Schorr-Galindo S (2015) First report: Penicillium adametzioides, a potential biocontrol agent for ochratoxin-producing fungus in grapes, resulting from natural product pre-harvest treatment. Food Control 51:23–30. https://doi.org/10.1016/j.foodcont.2014.10.034
Aidemark M, Tjellström H, Sandelius AS, Stålbrand H, Andreasson E, Rasmusson AG et al (2010) Trichoderma viride cellulase induces resistance to the antibiotic pore-forming peptide alamethicin associated with changes in the plasma membrane lipid composition of tobacco BY-2 cells. BMC Plant Biol 10:274. https://doi.org/10.1186/1471-2229-10-274
Akello J, Dubois T, Gold CS, Coyne D, Nakavuma J, Paparu P (2007) Beauveria bassiana (Balsamo) Vuillemin as an endophyte in tissue culture banana (Musa spp.). J Invertebr Pathol 96:34–42. https://doi.org/10.1016/j.jip.2007.02.004
Alam SS, Sakamoto K, Inubushi K (2011) Biocontrol efficiency of Fusarium wilt diseases by a root-colonizing fungus Penicillium sp. Soil Sci Plant Nutr 57:204–212. https://doi.org/10.1080/00380768.2011.564996
Alikhani M, Khatabi B, Sepehri M, Nekouei MK, Mardi M, Salekdeh GH (2013) A proteomics approach to study the molecular basis of enhanced salt tolerance in barley (Hordeum vulgare L.) conferred by the root mutualistic fungus Piriformospora indica. Mol BioSyst 9:1498–1510. https://doi.org/10.1039/c3mb70069k
Alston DG, Rangel DEN, Lacey LA, Golez HG, Jeong JK, Roberts DW (2005) Evaluation of novel fungal and nematode isolates for control of Conotrachelus nenuphar (Coleoptera: Curculionidae) larvae. Biol Control 35:163–171. https://doi.org/10.1016/j.biocontrol.2005.06.011
Altomare C, Norvell W, Björkman T, Harman G (1999) Solubilization of phosphates and micronutrients by the plant-growth-promoting and biocontrol fungus Trichoderma harzianum Rifai 1295-22. Appl Environ Microbiol 65:2926–2933
Alves L, Oliveira VL, Filho GNS (2010) Utilization of rocks and ectomycorrhizal fungi to promote growth of eucalypt. Braz J Microbiol 41:676–684. https://doi.org/10.1590/S1517-83822010000300018
Aly AH, Debbab A, Proksch P (2011) Fungal endophytes: unique plant inhabitants with great promises. Appl Microbiol Biotechnol 90:1829–1845. https://doi.org/10.1007/s00253-011-3270-y
Anastasiou E, Lorentz KO, Stein GJ, Mitchell PD (2014) Prehistoric schistosomiasis parasite found in the Middle East. Lancet Infect Dis 14:553–554. https://doi.org/10.1016/S1473-3099(14)70794-7
Anderson IC, Cairney JWG (2007) Ectomycorrhizal fungi: exploring the mycelial frontier. FEMS Microbiol Rev 31:388–406. https://doi.org/10.1111/j.1574-6976.2007.00073.x
Anith KN, Sreekumar A, Sreekumar J (2015) The growth of tomato seedlings inoculated with co-cultivated Piriformospora indica and Bacillus pumilus. Symbiosis 65:9–16. https://doi.org/10.1007/s13199-015-0313-7
Anitha R, Murugesan K (2005) Production of gliotoxin on natural substrates by Trichoderma virens. J Basic Microbiol 45:12–19. https://doi.org/10.1002/jobm.200410451
Arnold AE, Mejía LC, Kyllo D, Rojas EI, Maynard Z, Robbins N et al (2003) Fungal endophytes limit pathogen damage in a tropical tree. Proc Natl Acad Sci U S A 100:15649–15654. https://doi.org/10.1073/pnas.2533483100
Atugala DM, Deshappriya N (2015) Effect of endophytic fungi on plant growth and blast disease incidence of two traditional rice varieties. J Natl Sci Found Sri Lanka 43:173–187. https://doi.org/10.4038/jnsfsr.v43i2.7945
Augé RM (2004) Arbuscular mycorrhizae and soil/plant water relations. Can J Soil Sci 84:373–381. https://doi.org/10.4141/S04-002
Ayub A, Sultana N, Faruk M, Rahman M, Mamun A (2010) Control of rhizome rot disease of ginger (Zingiber officinale rose) by chemicals, soil amendments and soil antagonist. Agriculturist 7:57–61. https://doi.org/10.3329/agric.v7i1.5254
Azcón R, Barea JM (1992) The effect of vesicular-arbuscular mycorrhizae in decreasing Ca acquisition by alfalfa plants in calcareous soils. Biol Fertil Soils 13:155–159. https://doi.org/10.1007/BF00336272
Bae H, Sicher RC, Kim MS, Kim SH, Strem MD, Melnick RL et al (2009) The beneficial endophyte Trichoderma hamatum isolate DIS 219b promotes growth and delays the onset of the drought response in Theobroma cacao. J Exp Bot 60:3279–3295. https://doi.org/10.1093/jxb/erp165
Bagde US, Prasad R, Varma A (2011) Influence of culture filtrate of Piriformospora indica on growth and yield of seed oil in Helianthus annus. Symbiosis 53:83–88. https://doi.org/10.1007/s13199-011-0114-6
Baishya D, Deka P, Kalita MC (2015) In vitro co-cultivation of Piriformospora indica filtrate for improve biomass productivity in Artemisia annua (L.). Symbiosis 66:37–46. https://doi.org/10.1007/s13199-015-0331-5
Bakarat R, Al-mahareeq F, Ali M, Al-Masri M (2007) Biological control of Rhizoctonia solani by indigenous Trichoderma spp. isolates from Palestine. Hebron Univ Res J 3:1–15
Baker R (1984) The controlled experiment in the scientific method with special emphasis on biological control. Phytopathology 74:1019. https://doi.org/10.1094/phyto-74-1019
Baldwin JE, Derome AE, Field LD, Gallagher PT, Taha AA, Thaller V et al (1981) Biosynthesis of a cyclopentyl dienyl isonitrile acid in cultures of the fungus Trichoderma hamatum (Bon.) Bain. aggr. J Chem Soc Chem Commun 1981:1227–1229. https://doi.org/10.1039/C39810001227
Bamisile BS, Dash CK, Akutse KS, Keppanan R, Wang L (2018) Fungal endophytes: beyond herbivore management. Front Microbiol 9:1–11. https://doi.org/10.3389/fmicb.2018.00544
Barari H (2016) Biocontrol of tomato Fusarium wilt by Trichoderma species under in vitro and in vivo conditions. Cercet Agron Mold 49:91–98. https://doi.org/10.1515/cerce-2016-0008
Bartels RA, Paul A, Green H, Kapteyn HC, Murnane MM, Backus S et al (2002) Generation of spatially coherent light at extreme ultraviolet wavelengths. Science 297:376–378. https://doi.org/10.1126/science.1072191
Benítez T, Rincón AM, Limón MC, Codón AC (2004) Biocontrol mechanisms of Trichoderma strains. Int Microbiol 7:249–260
Berbee ML, Yoshimura A, Sugiyama J, Taylor JW (1995) Is Penicillium monophyletic? An evaluation of phylogeny in the family Trichocomaceae from 18S, 5.8S and ITS ribosomal DNA sequence data. Mycologia 87:210–222. https://doi.org/10.2307/3760907
Birhanu G, Zerihun T, Genene T, Endegena A, Misganaw W, Endeshaw A (2017) Phosphate solubilizing fungi isolated and characterized from Teff rhizosphere soil collected from North Showa zone, Ethiopia. Afr J Microbiol Res 11:687–696. https://doi.org/10.5897/ajmr2017.8525
Boddey RM, Urquiaga S, Alves BJR, Reis V (2003) Endophytic nitrogen fixation in sugarcane: present knowledge and future applications. Plant Soil 252:139–149. https://doi.org/10.1023/A:1024152126541
Bolton M (2009) Primary metabolism and plant defense—fuel for the fire. Mol Plant-Microbe Interact 22:487–497
Boon E, Meehan CJ, Whidden C, Wong DHJ, Langille MGI, Beiko RG (2014) Interactions in the microbiome: communities of organisms and communities of genes. FEMS Microbiol Rev 38:90–118. https://doi.org/10.1111/1574-6976.12035
Bray EA, Bailey-Serres J, Weretilnyk E (2000) Responses to abiotic stresses in biochemistry and molecular biology of plants. Am Soc Plant Physiol 139:1158–1203. https://doi.org/10.1104/pp.105.065698.various
Brundrett MC (2007) Understanding the roles of multifunctional mycorrhizal and endophytic fungi. Microb Root Endophytes 9:281–298. https://doi.org/10.1007/3-540-33526-9_16
Brundrett MC (2009) Mycorrhizal associations and other means of nutrition of vascular plants: Understanding the global diversity of host plants by resolving conflicting information and developing reliable means of diagnosis. Plant Soil 320:37–77. https://doi.org/10.1007/s11104-008-9877-9
Bucher M (2007) Functional biology of plant phosphate uptake at root and mycorrhiza interfaces. New Phytol 173:11–26. https://doi.org/10.1111/j.1469-8137.2006.01935.x
Burton EM, Knight JD (2005) Survival of Penicillium bilaiae inoculated on canola seed treated with Vitavax RS and Extender. Biol Fertil Soils 42:54–59. https://doi.org/10.1007/s00374-005-0862-7
Buscot F, Munch JC, Charcosset JY, Gardes M, Nehls U, Hampp R (2000) Recent advances in exploring physiology and biodiversity of ectomycorrhizas highlight the functioning of these symbioses in ecosystems. FEMS Microbiol Rev 24:601–614. https://doi.org/10.1016/S0168-6445(00)00048-6
Calderón AA, Zapata JM, Muñoz R, Pedreño MA, Barceló AR (1993) Resveratrol production as a part of the hypersensitive-like response of grapevine cells to an elicitor from Trichoderma viride. New Phytol 124:455–463. https://doi.org/10.1111/j.1469-8137.1993.tb03836.x
Calvo P, Nelson L, Kloepper JW (2014) Agricultural uses of plant biostimulants. Plant Soil 383:3–41. https://doi.org/10.1007/s11104-014-2131-8
Cao R, Liu X, Gao K, Mendgen K, Kang Z, Gao J et al (2009) Mycoparasitism of endophytic fungi isolated from reed on soilborne phytopathogenic fungi and production of cell wall-degrading enzymes in vitro. Curr Microbiol 59:584–592. https://doi.org/10.1007/s00284-009-9477-9
Cao MJ, Wang Z, Zhao Q, Mao JL, Speiser A, Wirtz M et al (2014) Sulfate availability affects ABA levels and germination response to ABA and salt stress in Arabidopsis thaliana. Plant J 77:604–615. https://doi.org/10.1111/tpj.12407
Cardoso JA, Odokonyero K, Madhusudana Rao I, de la Cruz Jimenez J, Botwright Acuna T (2017) Potential role of fungal endophytes in biological nitrification inhibition in Brachiaria grass species. J Plant Biochem Physiol 5:1–9. https://doi.org/10.4172/2329-9029.1000191
Chandanie WA, Kubota M, Hyakumachi M (2006) Interactions between plant growth promoting fungi and arbuscular mycorrhizal fungus Glomus mosseae and induction of systemic resistance to anthracnose disease in cucumber. Plant Soil 286:209–217. https://doi.org/10.1007/s11104-006-9038-y
Chandrasekaran M, Boughattas S, Hu S, Oh SH, Sa T (2014) A meta-analysis of arbuscular mycorrhizal effects on plants grown under salt stress. Mycorrhiza 24:611–625. https://doi.org/10.1007/s00572-014-0582-7
Chang Y-C (1986) Increased growth of plants in the presence of the biological control agent Trichoderma harzianum. Plant Dis 70:145. https://doi.org/10.1094/pd-70-145
Chet I, Ordentlich A, Shapira R, Oppenheim A (1990) Mechanisms of biocontrol of soil-borne plant pathogens by Rhizobacteria. Plant Soil 129:85–92. https://doi.org/10.1007/BF00011694
Chithra S, Jasim B, Sachidanandan P, Jyothis M, Radhakrishnan EK (2014) Piperine production by endophytic fungus Colletotrichum gloeosporioides isolated from Piper nigrum. Phytomedicine 21:534–540. https://doi.org/10.1016/j.phymed.2013.10.020
Chomcheon P, Wiyakrutta S, Sriubolmas N, Ngamrojanavanich N, Isarangkul D, Kittakoop P (2005) 3-Nitropropionic acid (3-NPA), a potent antimycobacterial agent from endophytic fungi: Is 3-NPA in some plants produced by endophytes? J Nat Prod 68:1103–1105. https://doi.org/10.1021/np050036a
Clarke BB, White JF, Hurley RH, Torres MS, Sun S, Huff DR (2006) Endophyte-mediated suppression of dollar spot disease in fine fescues. Plant Dis 90:994–998. https://doi.org/10.1094/PD-90-0994
Clay K, Schardl C (2002) Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. Am Nat 160:99–127. https://doi.org/10.1086/342161
Claydon N, Hanson JR, Truneh A, Avent AG (1991) Harzianolide, a butenolide metabolite from cultures of Trichoderma harzianum. Phytochemistry 30:3802–3803. https://doi.org/10.1016/0031-9422(91)80115-H
Contreras-Cornejo HA, Macías-Rodríguez L, Cortés-Penagos C, López-Bucio J (2009) Trichoderma virens, a plant beneficial fungus, enhances biomass production and promotes lateral root growth through an auxin-dependent mechanism in Arabidopsis. Plant Physiol 149:1579–1592. https://doi.org/10.1104/pp.108.130369
Corke ATK, Hunter T (1979) Biocontrol of Nectria galligena infection of pruning wounds on apple shoots. J Hortic Sci 54:47–55. https://doi.org/10.1080/00221589.1979.11514847
Costa LB, Rangel DEN, Morandi MAB, Bettiol W (2012) Impact of UV-B radiation on Clonostachys rosea germination and growth. World J Microbiol Biotechnol 28:2497–2504. https://doi.org/10.1007/s11274-012-1057-7
da Silva E (2006) Handbook of microbial biofertilizers. CRC Press, Boca Raton
Dai CC, Yu BY, Li X (2008) Screening of endophytic fungi that promote the growth of Euphorbia pekinensis. Afr J Biotechnol 7:3505–3510
Das A, Tripathi S, Varma A (2014) In vitro plant development and root colonization of Coleus forskohlii by Piriformospora indica. World J Microbiol Biotechnol 30:1075–1084. https://doi.org/10.1007/s11274-013-1526-7
Davis RA, Andjic V, Kotiw M, Shivas RG (2005) Phomoxins B and C: polyketides from an endophytic fungus of the genus Eupenicillium. Phytochemistry 66:2771–2775. https://doi.org/10.1016/j.phytochem.2005.09.004
De La Cruz J, Hidalgo-Gallego A, Lora JM, Benitez T, Pintor-Toro J, Llobell A (1992) Isolation and characterization of three chitinases from Trichoderma harzianum. Eur J Biochem 206:859–867. https://doi.org/10.1111/j.1432-1033.1992.tb16994.x
De Meyer G, Bigirimana J, Elad Y, Höfte M (1998) Induced systemic resistance in Trichoderma harzianum T39 biocontrol of Botrytis cinerea. Eur J Plant Pathol 104:279–286. https://doi.org/10.1023/A:1008628806616
Dingle J, McGee PA (2003) Some endophytic fungi reduce the density of pustules of Puccinia recondita f. sp. tritici in wheat. Mycol Res 107:310–316. https://doi.org/10.1017/S0953756203007512
Drahansky M, Paridah M, Moradbak A, Mohamed A, Owolabi F, Taiwo A, Asniza M, Abdul Khalid SH (2016) We are IntechOpen, the world’s leading publisher of open access books built by scientists, for scientists TOP 1%. Intech, London, p 13. https://doi.org/10.5772/57353
Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E et al (2011) Trichoderma: the genomics of opportunistic success. Nat Rev Microbiol 9:749–759. https://doi.org/10.1038/nrmicro2637
Dubey SC (2003) Integrated management of web blight of urd and mung bean. Indian Phytopathol 56:413–417
Dutta P, Das BC (2002) Management of collar rot of tomato by Trichoderma spp. and chemicals. Indian Phytopath 55:235–237
Elad Y (1983) Parasitism of Trichoderma spp. on Rhizoctonia solani and Sclerotium rolfsii-- scanning electron microscopy and fluorescence microscopy. Phytopathology 73:85. https://doi.org/10.1094/phyto-73-85
Elad Y, Kapat A (1999) The role of Trichoderma harzianum protease in the biocontrol of Botrytis cinerea. Eur J Plant Pathol 105:177–189. https://doi.org/10.1023/A:1008753629207
Esseling JJ, Emons AMC (2004) Dissection of nod factor signalling in legumes: cell biology, mutants and pharmacological approaches. J Microsc 214:104–113. https://doi.org/10.1111/j.0022-2720.2004.01322.x
Faeth SH, Fagan WF (2002) Fungal endophytes: common host plant symbionts but uncommon mutualists. Integr Comp Biol 42:360–368
Fakhro A, Andrade-Linares DR, von Bargen S, Bandte M, Büttner C, Grosch R et al (2010) Impact of Piriformospora indica on tomato growth and on interaction with fungal and viral pathogens. Mycorrhiza 20:191–200. https://doi.org/10.1007/s00572-009-0279-5
Ferreira RB, Monteiro S, Freitas R, Santos CN, Chen Z, Batista LM et al (2007) The role of plant defence proteins in fungal pathogenesis. Mol Plant Pathol 8:677–700. https://doi.org/10.1111/j.1364-3703.2007.00419.x
Finlay RD (2008) Ecological aspects of mycorrhizal symbiosis: with special emphasis on the functional diversity of interactions involving the extraradical mycelium. J Exp Bot 59:1115–1126. https://doi.org/10.1093/jxb/ern059
Finlay R, Wallander H, Smits M, Holmstrom S, van Hees P, Lian B et al (2009) The role of fungi in biogenic weathering in boreal forest soils. Fungal Biol Rev 23:101–106. https://doi.org/10.1016/j.fbr.2010.03.002
Fiori S, Fadda A, Giobbe S, Berardi E, Migheli Q (2008) Pichia angusta is an effective biocontrol yeast against postharvest decay of apple fruit caused by Botrytis cinerea and Monilia fructicola. FEMS Yeast Res 8:961–963. https://doi.org/10.1111/j.1567-1364.2008.00424.x
Firáková S, Šturdíková M, Múčková M (2007) Bioactive secondary metabolites produced by microorganisms associated with plants. Biologia 62:251–257. https://doi.org/10.2478/s11756-007-0044-1
Franz A, Burgstaller W, Schinner F (1991) Leaching with Penicillium simplicissimum: influence of metals and buffers on proton extrusion and citric acid production. Appl Environ Microbiol 57:769–774
Galvez L, Douds DD, Drinkwater LE, Wagoner P (2001) Effect of tillage and farming system upon VAM fungus populations and mycorrhizas and nutrient uptake of maize. Plant Soil 228:299–308. https://doi.org/10.1023/A:1004810116854
Gangadevi V, Muthumary J (2008) Taxol, an anticancer drug produced by an endophytic fungus Bartalinia robillardoides Tassi, isolated from a medicinal plant, Aegle marmelos Correa ex Roxb. World J Microbiol Biotechnol 24:717–724. https://doi.org/10.1007/s11274-007-9530-4
Ganley RJ, Sniezko RA, Newcombe G (2008) Endophyte-mediated resistance against white pine blister rust in Pinus monticola. For Ecol Manag 255:2751–2760. https://doi.org/10.1016/j.foreco.2008.01.052
Gautam AK, Avasthi S (2019) Fungal endophytes: potential biocontrol agents in agriculture. In: Kumar A, Singh AK, Choudhary KK (eds) Role of plant growth promoting microorganisms in sustainable agriculture and nanotechnology. Woodhead Publishing, Cambridge, pp 241–283. https://doi.org/10.1016/B978-0-12-817004-5.00014-2
Gautam AK, Kant M, Thakur Y (2013) Isolation of endophytic fungi from Cannabis sativa and study their antifungal potential. Arch Phytopathol Plant Protect 46:627–635. https://doi.org/10.1080/03235408.2012.749696
Ghabooli M, Khatabi B, Ahmadi FS, Sepehri M, Mirzaei M, Amirkhani A et al (2013) Proteomics study reveals the molecular mechanisms underlying water stress tolerance induced by Piriformospora indica in barley. J Proteome 94:289–301. https://doi.org/10.1016/j.jprot.2013.09.017
Ghanem G, Ewald A, Zerche S, Hennig F (2014) Effect of root colonization with Piriformospora indica and phosphate availability on the growth and reproductive biology of a Cyclamen persicum cultivar. Sci Hortic 172:233–241. https://doi.org/10.1016/j.scienta.2014.04.022
Ghelis T, Dellis O, Jeannette E, Bardat F, Cornel D, Miginiac E et al (2000) Abscissic acid specific expression of RAB18 involves activation of anion channels in Arabidopsis thaliana suspension cells. FEBS Lett 474:43–47. https://doi.org/10.1016/S0014-5793(00)01574-X
Gill SS, Gill R, Trivedi DK, Anjum NA, Sharma KK, Ansari MW et al (2016) Piriformospora indica: potential and significance in plant stress tolerance. Front Microbiol 7:1–20. https://doi.org/10.3389/fmicb.2016.00332
Goulard C, Hlimi S, Rebuffat S, Bodo B (1995) Trichorzins HA and MA, antibiotic peptides from Trichoderma harzianum: I. fermentation, isolation and biological properties. J Antibiot 48:1248–1253. https://doi.org/10.7164/antibiotics.48.1248
Grandgirard J, Poinsot D, Krespi L, Nénon JP, Cortesero AM (2002) Costs of secondary parasitism in the facultative hyperparasitoid Pachycrepoideus dubius: does host size matter? Entomol Exp Appl 103:239–248
Grosch R, Scherwinski K, Lottmann J, Berg G (2006) Fungal antagonists of the plant pathogen Rhizoctonia solani: selection, control efficacy and influence on the indigenous microbial community. Mycol Res 110:1464–1474. https://doi.org/10.1016/j.mycres.2006.09.014
Guo B, Wang Y, Sun X, Tang K (2008) Bioactive natural products from endophytes: a review. Appl Biochem Microbiol 44:153–158
Haggag W (2008) Biotechnological aspects of plant resistant for fungal diseases management. Am J Sustain Agric 2:1–18
Haggag WM, Mohamed HAA (2002) Enhancement of antifungal metabolite production from gamma-ray induced mutants of some Trichoderma species for control onion white rot disease. Plant Pathol Bull 11:45–56
Haggag W, Mohamed H (2007) Biotechnological aspects of microorganisms used in plant biological control. Am J Sustain Agric 1:7–12
Hamayun M, Khan SA, Iqbal I, Na CI, Khan AL, Hwang YH et al (2009) Chrysosporium pseudomerdarium produces gibberellins and promotes plant growth. J Microbiol 47:425–430. https://doi.org/10.1007/s12275-009-0268-6
Hamayun M, Khan SA, Khan AL, Rehman G, Kim YH, Iqbal I et al (2010) Gibberellin production and plant growth promotion from pure cultures of Cladosporium sp. MH-6 isolated from cucumber (Cucumis sativus L.). Mycologia 102:989–995. https://doi.org/10.3852/09-261
Handelsman J, Stabb EV (1996) Biocontrol of soil borne plant pathogens. Plant Cell 8:1855–1869. https://doi.org/10.1105/tpc.8.10.1855
Hanson LE, Howell CR (2004) Elicitors of plant defense responses from biocontrol strains of Trichoderma virens. Phytopathology 94:171–176
Haque MM, Ilias G, Molla A (2012) Impact of Trichoderma-enriched biofertilizer on the growth and yield of mustard (Brassica rapa L.) and tomato (Solanum lycopersicon Mill.). Agriculture 10:109–119. https://doi.org/10.3329/agric.v10i2.13148
Hardoim PR, van Overbeek LS, Berg G, Pirttilä AM, Compant S, Campisano A et al (2015) The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiol Mol Biol Rev 79:293–320. https://doi.org/10.1128/mmbr.00050-14
Harman GE (2006) Overview of mechanisms and uses of Trichoderma spp. Phytopathology 96:190–194. https://doi.org/10.1094/PHYTO-96-0190
Harman GE, Howell CR, Viterbo A, Chet I, Lorito M (2004) Trichoderma species- opportunistic, avirulent plant symbionts. Nat Rev Microbiol 2:43–56. https://doi.org/10.1038/nrmicro797
Harman GE, Björkman T, Ondik K, Shoresh M (2008) Changing paradigms on the mode of action and uses of Trichoderma spp. for biocontrol. Outlooks Pest Manag 19:24–29. https://doi.org/10.1564/19feb08
Harrach BD, Baltruschat H, Barna B, Fodor J, Kogel KH (2013) The mutualistic fungus Piriformospora indica protects barley roots from a loss of antioxidant capacity caused by the necrotrophic pathogen Fusarium culmorum. Mol Plant-Microbe Interact 26:599–605. https://doi.org/10.1094/MPMI-09-12-0216-R
Hashem M, Agami R, Alamri SA (2012) Effect of soil amendment with yeasts as bio-fertilizers on the growth and productivity of sugar beet. Afr J Agric Res 7:6613–6623. https://doi.org/10.5897/AJAR12.1989
Hause B, Mrosk C, Isayenkov S, Strack D (2007) Jasmonates in arbuscular mycorrhizal interactions. Phytochemistry 68:101–110
Hock B (2012) Fungal associations, 2nd edn. Springer, Berlin, pp 1–406. https://doi.org/10.1007/978-3-642-30826-0
Howden R, Andersen CR, Coldsbrough B, Cobbett CS (1995) A cadmium-sensitive, glutathione-deficient mutant of Arabidopsis thaliana. Plant Physiol 107:1067–1073
Howell CR, Stipanovic RD, Lumsden RD (1993) Antibiotic production by strains of Gliocladium virens and its relation to the biocontrol of cotton seedling diseases. Biocontrol Sci Tech 3:435–441. https://doi.org/10.1080/09583159309355298
Howell CR, Hanson LE, Stipanovic RD, Puckhaber LS, Wheeler MH (2000) Erratum: induction of terpenoid synthesis in cotton roots and control of Rhizoctonia solani by seed treatment with Trichoderma virens. Phytopathology 90:248–252
Huang YM, Srivastava AK, Zou YN, Ni QD, Han Y, Wu QS (2014) Mycorrhizal-induced calmodulin mediated changes in antioxidant enzymes and growth response of drought-stressed trifoliate orange. Front Microbiol 5:1–8. https://doi.org/10.3389/fmicb.2014.00682
Hui F, Liu J, Gao Q, Lou B (2015) Piriformospora indica confers cadmium tolerance in Nicotiana tabacum. J Environ Sci 37:184–191
Iqbal M, Ashraf M (2013) Gibberellic acid mediated induction of salt tolerance in wheat plants: growth, ionic partitioning, photosynthesis, yield and hormonal homeostasis. Environ Exp Bot 86:76–85. https://doi.org/10.1016/j.envexpbot.2010.06.002
Isaka M, Jaturapat A, Rukseree K, Danwisetkanjana K, Tanticharoen M, Thebtaranonth Y (2001) Phomoxanthones A and B, novel xanthone dimers from the endophytic fungus Phomopsis species. J Nat Prod 64:1015–1018. https://doi.org/10.1021/np010006h
Jahromi F, Aroca R, Porcel R, Ruiz-Lozano JM (2008) Influence of salinity on the in vitro development of Glomus intraradices and on the in vivo physiological and molecular responses of mycorrhizal lettuce plants. Microb Ecol 55:45–53. https://doi.org/10.1007/s00248-007-9249-7
Jakobsen I, Chen B, Munkvold L, Lundsgaard T, Zhu YG (2005) Contrasting phosphate acquisition of mycorrhizal fungi with that of root hairs using the root hairless barley mutant. Plant Cell Environ 28:928–938. https://doi.org/10.1111/j.1365-3040.2005.01345.x
Jayalakshmi SK, Raju S, Usha Rani S, Benagi VI, Sreeramulu K (2009) Trichoderma harzianum L 1 as a potential source for lytic enzymes and elicitor of defense responses in chickpea (Cicer arietinum L.) against wilt disease caused by Fusarium oxysporum f. sp. ciceri. Aust J Crop Sci 3:44–52
Jogawat A, Saha S, Bakshi M, Dayaman V, Kumar M, Dua M, Varma A et al (2013) Piriformospora indica rescues growth diminution of rice seedlings during high salt stress. Plant Signal Behav 8:37–41. https://doi.org/10.4161/psb.26891
Johnson JM, Alex T, Oelmüller R (2014) Piriformospora indica: the versatile and multifunctional root endophytic fungus for enhanced yield and tolerance to biotic and abiotic stress in crop plants. J Trop Agric 52:103–122
Johri AK, Oelmüller R, Dua M, Yadav V, Kumar M, Tuteja N et al (2015) Fungal association and utilization of phosphate by plants: success, limitations, and future prospects. Front Microbiol 6:1–13. https://doi.org/10.3389/fmicb.2015.00984
Kapri A, Tewari L (2010) Phosphate solubilization potential and phosphatase activity of rhizospheric Trichoderma spp. Braz J Microbiol 41. https://doi.org/10.1590/S1517-83822010005000001
Kaur T, Rana KL, Kour D, Sheikh I, Yadav N, Yadav AN, Dhaliwal HS, Saxena AK (2020) Microbe-mediated biofortification for micronutrients: present status and future challenges. In: Rastegari AA, Yadav AN, Awasthi AK, Yadav N (eds) Trends of microbial biotechnology for sustainable agriculture and biomedicine systems: perspectives for human health. Elsevier, Amsterdam, pp 1–17. https://doi.org/10.1016/B978-0-12-820528-0.00002-8
Khan AL, Lee IJ (2013) Endophytic Penicillium funiculosum LHL06 secretes gibberellin that reprograms Glycine max L. growth during copper stress. BMC Plant Biol 13:86. https://doi.org/10.1186/1471-2229-13-86
Khan MR, Mohiddin FA (2018) Trichoderma: its multifarious utility in crop improvement. In: Prasad R, Gill SS, Tuteja N (eds) Crop improvement through microbial biotechnology. Elsevier, Amsterdam, pp 263–291. https://doi.org/10.1016/B978-0-444-63987-5.00013-X
Khan SA, Hamayun M, Yoon H, Kim HY, Suh SJ, Hwang SK et al (2008) Plant growth promotion and Penicillium citrinum. BMC Microbiol 8:1–10. https://doi.org/10.1186/1471-2180-8-231
Khan AL, Hamayun M, Kim YH, Kang SM, Lee IJ (2011) Ameliorative symbiosis of endophyte (Penicillium funiculosum LHL06) under salt stress elevated plant growth of Glycine max L. Plant Physiol Biochem 49:852–861
Khan AL, Waqas M, Hamayun M, Al-Harrasi A, Al-Rawahi A, Lee IJ (2013) Co-synergism of endophyte Penicillium resedanum LK6 with salicylic acid helped Capsicum annuum in biomass recovery and osmotic stress mitigation. BMC Microbiol 13:51. https://doi.org/10.1186/1471-2180-13-51
Khokhar I, Haider MS, Mukhtar I, Mushtaq S (2013) Biological control of Aspergillus niger, the cause of Black-rot disease of Allium cepa L. (onion), by Penicillium species. J Agrobiol 29:23–28. https://doi.org/10.2478/v10146-012-0003-5
Kim S, Shin DS, Lee T, Oh KB (2004) Periconicins, two new fusicoccane diterpenes produced by an endophytic fungus Periconia sp. with antibacterial activity. J Nat Prod 67:448–450. https://doi.org/10.1021/np030384h
Kim HY, Choi GJ, Lee HB, Lee SW, Lim HK, Jang KS et al (2007) Some fungal endophytes from vegetable crops and their anti-oomycete activities against tomato late blight. Lett Appl Microbiol 44:332–337. https://doi.org/10.1111/j.1472-765X.2006.02093.x
Knecht K, Seyffarth M, Desel C, Thurau T, Sherameti I, Lou B et al (2010) Expression of BvGLP-1 encoding a germin-like protein from sugar beet in Arabidopsis thaliana leads to resistance against phytopathogenic fungi. Mol Plant-Microbe Interact 23:446–457. https://doi.org/10.1094/MPMI-23-4-0446
Köhl J, Kolnaar R, Ravensberg WJ (2019) Mode of action of microbial biological control agents against plant diseases: relevance beyond efficacy. Front Plant Sci 10:1–19. https://doi.org/10.3389/fpls.2019.00845
Koike N, Hyakumachi M, Kageyama K, Tsuyumu S, Doke N (2001) Induction of systemic resistance in cucumber against several diseases by plant growth-promoting fungi: lignification and superoxide generation. Eur J Plant Pathol 107:523–533. https://doi.org/10.1023/A:1011203826805
Kotze C, Van Niekerk J, Mostert L, Halleen F, Fourie P (2011) Evaluation of biocontrol agents for grapevine pruning wound protection against trunk pathogen infection. Phytopathol Mediterr 50:247–263
Kour D, Rana KL, Yadav AN, Yadav N, Kumar V, Kumar A, Sayyed RZ, Hesham AE-L, Dhaliwal HS, Saxena AK (2019a) Drought-tolerant phosphorus-solubilizing microbes: biodiversity and biotechnological applications for alleviation of drought stress in plants. In: Sayyed RZ, Arora NK, Reddy MS (eds) Plant growth promoting rhizobacteria for sustainable stress management, Rhizobacteria in abiotic stress management, vol 1. Springer, Singapore, pp 255–308. https://doi.org/10.1007/978-981-13-6536-2_13
Kour D, Rana KL, Yadav N, Yadav AN, Singh J, Rastegari AA, Saxena AK (2019b) Agriculturally and industrially important fungi: current developments and potential biotechnological applications. In: Yadav AN, Singh S, Mishra S, Gupta A (eds) Recent advancement in white biotechnology through fungi, Perspective for value-added products and environments, vol 2. Springer, Cham, pp 1–64. https://doi.org/10.1007/978-3-030-14846-1_1
Kour D, Rana KL, Kaur T, Sheikh I, Yadav AN, Kumar V, Dhaliwal HS, Saxena AK (2020a) Microbe-mediated alleviation of drought stress and acquisition of phosphorus in great millet (Sorghum bicolour L.) by drought-adaptive and phosphorus-solubilizing microbes. Biocatal Agric Biotechnol 23:101501. https://doi.org/10.1016/j.bcab.2020.101501
Kour D, Rana KL, Sheikh I, Kumar V, Yadav AN, Dhaliwal HS, Saxena AK (2020b) Alleviation of drought stress and plant growth promotion by Pseudomonas libanensis EU-LWNA-33, a drought-adaptive phosphorus-solubilizing bacterium. Proc Natl Acad Sci India Sec B Biol Sci. https://doi.org/10.1007/s40011-019-01151-4
Kour D, Rana KL, Yadav AN, Sheikh I, Kumar V, Dhaliwal HS, Saxena AK (2020c) Amelioration of drought stress in Foxtail millet (Setaria italica L.) by P-solubilizing drought-tolerant microbes with multifarious plant growth promoting attributes. Environ Sustain. https://doi.org/10.1007/s42398-020-00094-1
Kour D, Rana KL, Yadav AN, Yadav N, Kumar M, Kumar V, Vyas P, Dhaliwal HS, Saxena AK (2020d) Microbial biofertilizers: bioresources and eco-friendly technologies for agricultural and environmental sustainability. Biocatal Agric Biotechnol 23:101487. https://doi.org/10.1016/j.bcab.2019.101487
Kuldau G, Bacon C (2008) Clavicipitaceous endophytes: their ability to enhance resistance of grasses to multiple stresses. Biol Control 46:57–71. https://doi.org/10.1016/j.biocontrol.2008.01.023
Kumar M, Yadav V, Tuteja N, Johri AK (2009) Antioxidant enzyme activities in maize plants colonized with Piriformospora indica. Microbiology 155:780–790. https://doi.org/10.1099/mic.0.019869-0
Kumar M, Kour D, Yadav AN, Saxena R, Rai PK, Jyoti A, Tomar RS (2019a) Biodiversity of methylotrophic microbial communities and their potential role in mitigation of abiotic stresses in plants. Biologia 74:287–308. https://doi.org/10.2478/s11756-019-00190-6
Kumar V, Joshi S, Pant NC, Sangwan P, Yadav AN, Saxena A, Singh D (2019b) Molecular approaches for combating multiple abiotic stresses in crops of arid and semi-arid region. In: Singh SP, Upadhyay SK, Pandey A, Kumar S (eds) Molecular approaches in plant biology and environmental challenges. Springer, Singapore, pp 149–170. https://doi.org/10.1007/978-981-15-0690-1_8
Lakshmanan P, Jagadeesan R, Sudha A, Rajesh M, Prabhakara S, Prasad MA (2008) Potentiality of a new mushroom fungus Lentinus connatus Berk. for the production of biomanure from sugarcane trash (Saccharum officinarum L.) and its impact on the management of groundnut root rot diseases. Arch Phytopathol Plant Protect 41:273–289. https://doi.org/10.1080/03235400600680907
Lewis GC (2004) Effects of biotic and abiotic stress on the growth of three genotypes of Lolium perenne with and without infection by the fungal endophyte Neotyphodium lolii. Ann Appl Biol 144:53–63. https://doi.org/10.1111/j.1744-7348.2004.tb00316.x
Li JY, Strobel GA (2001) Jesterone and hydroxy-jesterone antioomycete cyclohexenone epoxides from the endophytic fungus Pestalotiopsis jesteri. Phytochemistry 57:261–265. https://doi.org/10.1016/S0031-9422(01)00021-8
Li X, Zhang L (2015) Endophytic infection alleviates Pb2+ stress effects on photosystem II functioning of Oryza sativa leaves. J Hazard Mater 295:79–85. https://doi.org/10.1016/j.jhazmat.2015.04.015
Li HM, Sullivan R, Moy M, Kobayashi DY, Belanger FC (2004) Expression of a novel chitinase by the fungal endophyte in Poa ampla. Mycologia 96:526–536. https://doi.org/10.1080/15572536.2005.11832951
Li E, Jiang L, Guo L, Zhang H, Che Y (2008) Pestalachlorides A-C, antifungal metabolites from the plant endophytic fungus Pestalotiopsis adusta. Bioorg Med Chem 16:7894–7899. https://doi.org/10.1016/j.bmc.2008.07.075
Li Z, Alves SB, Roberts DW, Fan M, Delalibera I, Tang J et al (2010) Biological control of insects in Brazil and China: history, current programs and reasons for their successes using entomopathogenic fungi. Biocontrol Sci Tech 20:117–136. https://doi.org/10.1080/09583150903431665
Lian B, Wang B, Pan M, Liu C, Teng HH (2008) Microbial release of potassium from K-bearing minerals by thermophilic fungus Aspergillus fumigatus. Geochim Cosmochim Acta 72:87–98. https://doi.org/10.1016/j.gca.2007.10.005
Lin C, Yang J, Sun H, Huang X, Wang R, Zhang KQ (2007) Purification and characterization of a β-1,3-glucanase from the novel mycoparasite Periconia byssoides. Biotechnol Lett 29:617–622. https://doi.org/10.1007/s10529-006-9287-0
Liu CH, Zou WX, Lu H, Tan RX (2001) Antifungal activity of Artemisia annua endophyte cultures against phytopathogenic fungi. J Biotechnol 88:277–282. https://doi.org/10.1016/S0168-1656(01)00285-1
Liu SY, Lo CT, Shibu MA, Leu YL, Jen BOY, Peng KC (2009) Study on the anthraquinones separated from the cultivation of Trichoderma harzianum strain Th-R16 and their biological activity. J Agric Food Chem 57:7288–7292. https://doi.org/10.1021/jf901405c
Lopez DC, Sword GA (2015) The endophytic fungal entomopathogens Beauveria bassiana and Purpureocillium lilacinum enhance the growth of cultivated cotton (Gossypium hirsutum) and negatively affect survival of the cotton bollworm (Helicoverpa zea). Biol Control 89:53–60. https://doi.org/10.1016/j.biocontrol.2015.03.010
Lu H, Zou WX, Meng JC, Hu J, Tan RX (2000a) New bioactive metabolites produced by. Plant Sci 151:67–73. https://doi.org/10.1016/S0168-9452(99)00199-5
Lu H, Zou WX, Meng JC, Hu J, Tan RX (2000b) New bioactive metabolites produced by Colletotrichum sp., an endophytic fungus in Artemisia annua. Plant Sci 151:67–73. https://doi.org/10.1016/S0168-9452(99)00199-5
Lumsden RD (1989) Biological control of damping-off caused by Pythium ultimum and Rhizoctonia solani with Gliocladium virens in soil less mix. Phytopathology 79:361. https://doi.org/10.1094/phyto-79-361
Malmierca MG, Cardoza RE, Alexander NJ, McCormick SP, Hermosa R, Monte E et al (2012) Involvement of Trichoderma trichothecenes in the biocontrol activity and induction of plant defense-related genes. Appl Environ Microbiol 78:4856–4868. https://doi.org/10.1128/AEM.00385-12
Mane RS, Vedamurthy AB (2018) The fungal endophytes: sources and future prospects. J Med Plants Stud 6:121–126
Manoharachary C, Sridhar K, Singh R, Adholeya A, Suryanarayanan TS, Rawat S et al (2005) Fungal biodiversity: distribution, conservation and prospecting of fungi from India. Curr Sci 89:58–71
Marfori EC, Kajiyama S, Fukusaki EI, Kobayashi A (2002) Trichosetin, a novel tetramic acid antibiotic produced in dual culture of Trichoderma harzianum and Catharanthus roseus callus. Z Naturforsch 57:465–470. https://doi.org/10.1515/znc-2002-5-611
Marquez JA, Horan AC, Kalyanpur M, Lee BK, Loebenberg D, Miller GH et al (1983) The Hazimicins, a new class of antibiotics. J Antibiot 36:1101–1108
Martinez C, Blanc F, Le Claire E, Besnard O, Nicole M, Baccou JC (2001) Salicylic acid and ethylene pathways are differentially activated in melon cotyledons by active or heat-denatured cellulase from Trichoderma longibrachiatum. Plant Physiol 127:334–344. https://doi.org/10.1104/pp.127.1.334
Martino E, Perotto S, Parsons R, Gadd GM (2003) Solubilization of insoluble inorganic zinc compounds by ericoid mycorrhizal fungi derived from heavy metal polluted sites. Soil Biol Biochem 35:133–141. https://doi.org/10.1016/S0038-0717(02)00247-X
Massaccesi G, Romero MC, Cazau MC, Bucsinszky AM (2002) Cadmium removal capacities of filamentous soil fungi isolated from industrially polluted sediments, in La Plata (Argentina). World J Microbiol Biotechnol 18:817–820. https://doi.org/10.1023/A:1021282718440
Mauch-Mani B, Mauch F (2005) The role of abscisic acid in plant-pathogen interactions. Curr Opin Plant Biol 8:409–414. https://doi.org/10.1016/j.pbi.2005.05.015
Mazid M, Khan Zeba H, Quddusi S, Khan TA, Mohammad F, Mohd M et al (2011) Significance of Sulphur nutrition against metal induced oxidative stress in plants. J Stress Physiol Biochem 7:165–184
Meesala S, Subramaniam G (2016) Penicillium citrinum VFI-51 as biocontrol agent to control charcoal rot of sorghum (Sorghum bicolor (L.) Moench). Afr J Microbiol Res 10:669–674. https://doi.org/10.5897/ajmr2015.7831
Mejía LC, Rojas EI, Maynard Z, Van Bael S, Arnold AE, Hebbar P et al (2008) Endophytic fungi as biocontrol agents of Theobroma cacao pathogens. Biol Control 46:4–14. https://doi.org/10.1016/j.biocontrol.2008.01.012
Menon S, Mohan V (2007) Isolation of potential phosphate solubilizing bacteria from the rhizosphere of fast growing native tree species. pp 98–105
Metcalf DA, Wilson CR (2001) The process of antagonism of Sclerotium cepivorum in white rot affected onion roots by Trichoderma koningii. Plant Pathol 50:249–257. https://doi.org/10.1046/j.1365-3059.2001.00549.x
Miao FP, Liang XR, Yin XL, Wang G, Ji NY (2012) Absolute configurations of unique harziane diterpenes from Trichoderma species. Org Lett 14:3815–3817. https://doi.org/10.1021/ol3014717
Miles CO, Lane GA, Di Menna ME, Garthwaite I, Piper EL, Ball OJP et al (1996) High levels of ergonovine and lysergic acid amide in toxic Achnatherum inebrians accompany infection by an Acremonium-like endophytic fungus. J Agric Food Chem 44:1285–1290. https://doi.org/10.1021/jf950410k
Miller RM, Jastrow JD (2000) Mycorrhizal fungi influence soil structure. In: Arbuscular mycorrhizas: physiology and function. Springer, Berlin, pp 3–18. https://doi.org/10.1007/978-94-017-0776-3_1
Miller CM, Miller RV, Garton-Kenny D, Redgrave B, Sears J, Condron MM et al (1998) Ecomycins, unique antimycotics from Pseudomonas viridiflava. J Appl Microbiol 84:937–944. https://doi.org/10.1046/j.1365-2672.1998.00415.x
Mittal V, Singh O, Nayyar H, Kaur J, Tewari R (2008) Stimulatory effect of phosphate-solubilizing fungal strains (Aspergillus awamori and Penicillium citrinum) on the yield of chickpea (Cicer arietinum L. cv. GPF2). Soil Biol Biochem 40:718–727. https://doi.org/10.1016/j.soilbio.2007.10.008
Mohiddin FA, Khan MR, Khan SM, Bhat BH (2010) Why Trichoderma is considered super hero (super fungus) against the evil parasites? Plant Pathol J 9:92–102. https://doi.org/10.3923/ppj.2010.92.102
Molitor A, Zajic D, Voll LM, Pons-Kühnemann J, Samans B, Kogel KH et al (2011) Barley leaf transcriptome and metabolite analysis reveals new aspects of compatibility and Piriformospora indica-mediated systemic induced resistance to powdery mildew. Mol Plant-Microbe Interact 24:1427–1439. https://doi.org/10.1094/MPMI-06-11-0177
Monte E (2001) Understanding Trichoderma: between biotechnology and microbial ecology. Int Microbiol 4:1–4. https://doi.org/10.1007/s101230100001
Munns R, Tester M (2008) Mechanisms of salinity tolerance. Annu Rev Plant Biol 59:651–681. https://doi.org/10.1146/annurev.arplant.59.032607.092911
Murphy BR, Doohan FM, Hodkinson TR (2015) Fungal root endophytes of a wild barley species increase yield in a nutrient-stressed barley cultivar. Symbiosis 65:1–7. https://doi.org/10.1007/s13199-015-0314-6
Nelson EB, Harman GE, Nash GT (1988) Enhancement of Trichoderma -induced biological control of Pythium seed rot and pre-emergence damping-off of peas. Soil Biol Biochem 20:145–150. https://doi.org/10.1016/0038-0717(88)90030-2
Nemčovič M, Jakubíková L, Víden I, Farkaš V (2008) Induction of conidiation by endogenous volatile compounds in Trichoderma spp. FEMS Microbiol Lett 284:231–236. https://doi.org/10.1111/j.1574-6968.2008.01202.x
Neubert K, Mendgen K, Brinkmann H, Wirsel SGR (2006) Only a few fungal species dominate highly diverse mycofloras associated with the common reed. Appl Environ Microbiol 72:1118–1128. https://doi.org/10.1128/AEM.72.2.1118-1128.2006
Nisa H, Kamili AN, Nawchoo IA, Shafi S, Shameem N, Bandh SA (2015) Fungal endophytes as prolific source of phytochemicals and other bioactive natural products: A review. Microb Pathog 82:50–59. https://doi.org/10.1016/j.micpath.2015.04.001
Oelmüller R, Sherameti I, Tripathi S, Varma A (2009) Piriformospora indica, a cultivable root endophyte with multiple biotechnological applications. Symbiosis 49:1–17. https://doi.org/10.1007/s13199-009-0009-y
Of O (2009) The world of organic agriculture, vol 2. IFOAM, Bonn, pp 42–54
Okoth SA, Otadoh JA, Ochanda JO (2011) Improved seedling emergence and growth of maize and beans by Trichoderma harzianum. Trop Subtrop Agroecosyst 13:65–71
Owen D, Williams AP, Griffith GW, Withers PJA (2015) Use of commercial bio-inoculants to increase agricultural production through improved phosphorus acquisition. Appl Soil Ecol 86:41–54. https://doi.org/10.1016/j.apsoil.2014.09.012
Pal S, Singh HB, Farooqui A, Rakshit A (2015) Fungal biofertilizers in Indian agriculture: perception, demand and promotion. J Eco-friendly Agric 10:101–113
Pan BF, Su X, Hu B, Yang N, Chen Q, Wu W (2015) Fusarium redolens 6WBY3, an endophytic fungus isolated from Fritillaria unibracteata var. wabuensis, produces peimisine and imperialine-3β-d-glucoside. Fitoterapia 103:213–221. https://doi.org/10.1016/j.fitote.2015.04.006
Panaccione DG (2005) Origins and significance of ergot alkaloid diversity in fungi. FEMS Microbiol Lett 251:9–17. https://doi.org/10.1016/j.femsle.2005.07.039
Park JH, Park JH, Choi GJ, Lee SW, Jang KS, Choi YH et al (2003) Screening for antifungal endophytic fungi against six plant pathogenic fungi. Mycobiology 31:179. https://doi.org/10.4489/myco.2003.31.3.179
Pham GH, Kumari R, Singh A, Malla R, Prasad R, Sachdev M et al (2008) Axenic culture of symbiotic fungus Piriformospora indica. Plant Surf Microbiol 30:593–613. https://doi.org/10.1007/978-3-540-74051-3_30
Photita W, Lumyong S, Lumyong P, Hyde KD (2001) Endophytic fungi of wild banana (Musa acuminata) at Doi Suthep Pui National Park, Thailand. Mycol Res 105:1508–1513. https://doi.org/10.1017/S0953756201004968
Phuwapraisirisan P, Rangsan J, Siripong P, Tip-Pyang S (2006) 9-epi-viridiol, a novel cytotoxic furanosteroid from soil fungus Trichoderma virens. Nat Prod Res 20:1321–1325. https://doi.org/10.1080/14786410601101969
Polizzi V, Adams A, Picco AM, Adriaens E, Lenoir J, Van Peteghem C et al (2011) Influence of environmental conditions on production of volatiles by Trichoderma atroviride in relation with the sick building syndrome. Build Environ 46:945–954. https://doi.org/10.1016/j.buildenv.2010.10.024
Porat R, Vinokur V, Weiss B, Cohen L, Daus A, Goldschmidt EE et al (2003) Induction of resistance to Penicillium digitatum in grapefruit by β-aminobutyric acid. Eur J Plant Pathol 109:901–907. https://doi.org/10.1023/B:EJPP.0000003624.28975.45
Porras M, Barrau C, Romero F (2007) Effects of soil solarization and Trichoderma on strawberry production. Crop Prot 26:782–787
Prasad RDNT (2015) Liquid formulation of Trichoderma species for management of gray mold in castor (Ricinus communis L.) and Alternaria leaf blight in sunflower (Helianthus annuus L.). J Biofertiliz Biopest 06:1–11
Prasad R, Kamal S, Sharma PK, Oelmüller R, Varma A (2013) Root endophyte Piriformospora indica DSM 11827 alters plant morphology, enhances biomass and antioxidant activity of medicinal plant Bacopa monniera. J Basic Microbiol 53:1016–1024. https://doi.org/10.1002/jobm.201200367
Priyadharsini P, Muthukumar T (2017) The root endophytic fungus Curvularia geniculata from Parthenium hysterophorus roots improves plant growth through phosphate solubilization and phytohormone production. Fungal Ecol 27:69–77. https://doi.org/10.1016/j.funeco.2017.02.007
Promwee A, Issarakraisila M, Intana W, Chamswarng C, Yenjit P (2014) Phosphate solubilization and growth promotion of rubber tree (Hevea brasiliensis Muell. Arg.) by Trichoderma strains. J Agric Sci 6:8. https://doi.org/10.5539/jas.v6n9p8
Qiang X, Zechmann B, Reitz MU, Kogel KH, Schäfer P (2012) The mutualistic fungus Piriformospora indica colonizes Arabidopsis roots by inducing an endoplasmic reticulum stress-triggered caspase-dependent cell death. Plant Cell 24:794–809. https://doi.org/10.1105/tpc.111.093260
Rabeendran N, Moot DJ, Jones EE, Stewart A (2000) Inconsistent growth promotion of cabbage and lettuce from Trichoderma isolates. Pathol Fruit Veg N Z Plant Prot 53:143–146
Rabiey M, Ullah I, Shaw MW (2015) The endophytic fungus Piriformospora indica protects wheat from Fusarium crown rot disease in simulated UK autumn conditions. Plant Pathol 64:1029–1040. https://doi.org/10.1111/ppa.12335
Radhakrishnan R, Shim KB, Lee BW, Hwang CD, Pae SB, Park CH et al (2013) IAA-producing Penicillium sp. NICS01 triggers plant growth and suppresses Fusarium sp.-induced oxidative stress in sesame (Sesamum indicum L.). J Microbiol Biotechnol 23:856–863. https://doi.org/10.4014/jmb.1209.09045
Rahman MA, Rahman MM, Ferdousi M, Alam MF (2012) Use of culture filtrates of Trichoderma strains as a biological control agent against Colletotrichum capsici causing Anthracnose fruit rot disease of chili. J Biol Environ Sci 2:9–18
Rai M, Acharya D, Singh A, Varma A (2001) Positive growth responses of the medicinal plants Spilanthes calva and Withania somnifera to inoculation by Piriformospora indica in a field trial. Mycorrhiza 11:123–128. https://doi.org/10.1007/s005720100115
Rai A, Rai S, Rakshit A (2013) Mycorrhiza-mediated phosphorus use efficiency in plants. Environ Exp Biol 11:107–117
Rana KL, Kour D, Sheikh I, Dhiman A, Yadav N, Yadav AN, Rastegari AA, Singh K, Saxena AK (2019a) Endophytic fungi: biodiversity, ecological significance and potential industrial applications. In: Yadav AN, Mishra S, Singh S, Gupta A (eds) Recent advancement in white biotechnology through fungi, Diversity and enzymes perspectives, vol 1. Springer, Cham, pp 1–62
Rana KL, Kour D, Sheikh I, Yadav N, Yadav AN, Kumar V, Singh BP, Dhaliwal HS, Saxena AK (2019b) Biodiversity of endophytic fungi from diverse niches and their biotechnological applications. In: Singh BP (ed) Advances in endophytic fungal research: present status and future challenges. Springer, Cham, pp 105–144. https://doi.org/10.1007/978-3-030-03589-1_6
Rana KL, Kour D, Yadav AN (2019c) Endophytic microbiomes: biodiversity, ecological significance and biotechnological applications. Res J Biotechnol 14:142–162
Rana KL, Kour D, Yadav N, Yadav AN (2020) Endophytic microbes in nanotechnology: current development, and potential biotechnology applications. In: Kumar A, Singh VK (eds) Microbial endophytes. Woodhead Publishing, Cambridge, pp 231–262. https://doi.org/10.1016/B978-0-12-818734-0.00010-3
Rangel DEN, Finlay RD, Hallsworth JE, Dadachova E, Gadd GM (2018) Fungal strategies for dealing with environment- and agriculture-induced stresses. Fungal Biol 122:602–612. https://doi.org/10.1016/j.funbio.2018.02.002
Rastegari AA, Yadav AN, Awasthi AA, Yadav N (2020a) Trends of microbial biotechnology for sustainable agriculture and biomedicine systems: diversity and functional perspectives. Elsevier, Cambridge
Rastegari AA, Yadav AN, Awasthi AA, Yadav N (2020b) Trends of microbial biotechnology for sustainable agriculture and biomedicine systems: perspectives for human health. Elsevier, Cambridge
Rausch C, Bucher M (2002) Molecular mechanisms of phosphate transport in plants. Planta 216:23–37. https://doi.org/10.1007/s00425-002-0921-3
Rawat R, Tewari L (2011) Effect of abiotic stress on phosphate solubilization by biocontrol fungus Trichoderma sp. Curr Microbiol 62:1521–1526. https://doi.org/10.1007/s00284-011-9888-2
Reino JL, Guerrero RF, Hernández-Galán R, Collado IG (2008) Secondary metabolites from species of the biocontrol agent Trichoderma. Phytochem Rev 7:89–123. https://doi.org/10.1007/s11101-006-9032-2
Richmond DS (2004) Competition between Turfgrasses and Dandelion. https://doi.org/10.2135/cropsci2004.6000
Rivera-Varas VV, Freeman TA, Gudmestad NC, Secor GA (2007) Mycoparasitism of Helminthosporium solani by Acremonium strictum. Phytopathology 97:1331–1337. https://doi.org/10.1094/PHYTO-97-10-1331
Rodriguez RJ, Henson J, Van Volkenburgh E, Hoy M, Wright L, Beckwith F, Kim YO, Redman RS (2008) Stress tolerance in plants via habitat-adapted symbiosis. ISME J 2:404–416. https://doi.org/10.1038/ismej.2007.106
Rüegsegger A, Schmutz D, Brunold C (1990) Regulation of glutathione synthesis by cadmium in Pisum sativum L. Plant Physiol 93:1579–1584. https://doi.org/10.1104/pp.93.4.1579
Saba H (2012) Trichoderma – a promising plant growth stimulator and biocontrol agent. Mycosphere 3:524–531. https://doi.org/10.5943/mycosphere/3/4/14
Samson RA (2016) Phylogenetic analysis of Penicillium subgenus Penicillium using partial β -tubulin sequences. Stud Mycol 49:175–200
Sankar P, Sharma RC (2001) Management of charcoal rot of maize with Trichoderma viride. Indian Phytopathol 54:390–391
Santos A, Marquina D (2004) Killer toxin of Pichia membranifaciens and its possible use as a biocontrol agent against grey mould disease of grapevine. Microbiology 150:2527–2534. https://doi.org/10.1099/mic.0.27071-0
Saraf M, Thakkar A, Pandya U, Joshi M, Parikh J (2013) Potential of plant growth promoting microorganisms as biofertilizers and biopesticides and it’s exploitation in sustainable agriculture. J Microbiol Biotechnol Res 3:54–62
Saravanakumar K, Shanmuga Arasu V, Kathiresan K (2013) Effect of Trichoderma on soil phosphate solubilization and growth improvement of Avicennia marina. Aquat Bot 104:101–105. https://doi.org/10.1016/j.aquabot.2012.09.001
Saravanan VS, Kumar MR, Sa TM (2011) Bacteria in agrobiology: plant nutrient management. Bact Agrobiol Plant Nutr Manag. https://doi.org/10.1007/978-3-642-21061-7
Saxena J, Saini A, Ravi I, Chandra S, Garg V (2015) Consortium of phosphate-solubilizing bacteria and fungi for promotion of growth and yield of chickpea (Cicer arietinum). J Crop Improv 29:353–369. https://doi.org/10.1080/15427528.2015.1027979
Schwarzott D, Walker C, Schubler A (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol Res 105:1413–1421
Selim K (2012) Biology of endophytic fungi. Curr Res Environ Appl Mycol 2:31–82. https://doi.org/10.5943/cream/2/1/3
Serfling A, Wirsel SGR, Lind V, Deising HB (2007) Performance of the biocontrol fungus Piriformospora indica on wheat under greenhouse and field conditions. Phytopathology 97:523–531. https://doi.org/10.1094/PHYTO-97-4-0523
Shahabivand S, Maivan HZ, Goltapeh EM, Sharifi M, Aliloo AA (2012) The effects of root endophyte and arbuscular mycorrhizal fungi on growth and cadmium accumulation in wheat under cadmium toxicity. Plant Physiol Biochem 60:53–58. https://doi.org/10.1016/j.plaphy.2012.07.018
Shahollari B, Varma A, Oelmüller R (2005) Expression of a receptor kinase in Arabidopsis roots is stimulated by the basidiomycete Piriformospora indica and the protein accumulates in Triton X-100 insoluble plasma membrane microdomains. J Plant Physiol 162:945–958. https://doi.org/10.1016/j.jplph.2004.08.012
Sharma G, Agrawal V (2013) Marked enhancement in the artemisinin content and biomass productivity in Artemisia annua L. shoots co-cultivated with Piriformospora indica. World J Microbiol Biotechnol 29:1133–1138. https://doi.org/10.1007/s11274-013-1263-y
Sharma S, Kour D, Rana KL, Dhiman A, Thakur S, Thakur P, Thakur S, Thakur N, Sudheer S, Yadav N, Yadav AN, Rastegari AA, Singh K (2019) Trichoderma: biodiversity, ecological significances, and industrial applications. In: Yadav AN, Mishra S, Singh S, Gupta A (eds) Recent advancement in white biotechnology through fungi, Diversity and enzymes perspectives, vol 1. Springer, Cham, pp 85–120. https://doi.org/10.1007/978-3-030-10480-1_3
Sherameti I, Shahollari B, Venus Y, Altschmied L, Varma A, Oelmüller R (2005) The endophytic fungus Piriformospora indica stimulates the expression of nitrate reductase and the starch-degrading enzyme glucan-water dikinase in tobacco and Arabidopsis roots through a homeodomain transcription factor that binds to a conserved motif in. J Biol Chem 280:26241–26247. https://doi.org/10.1074/jbc.M500447200
Sherameti I, Tripathi S, Varma A, Oelmüller R (2008) The root-colonizing endophyte Pirifomospora indica confers drought tolerance in Arabidopsis by stimulating the expression of drought stress-related genes in leaves. Mol Plant-Microbe Interact 21:799–807. https://doi.org/10.1094/MPMI-21-6-0799
Shivanna MB, Meera MS, Hyakumachi M (1994) Sterile fungi from zoysiagrass rhizosphere as plant growth promoters in spring wheat. Can J Microbiol 40:637–644. https://doi.org/10.1139/m94-101
Siddiquee S, Cheong BE, Taslima K, Kausar H, Hasan MM (2012) Separation and identification of volatile compounds from liquid cultures of Trichoderma harzianum by GC-MS using three different capillary columns. J Chromatogr Sci 50:358–367. https://doi.org/10.1093/chromsci/bms012
Siddiqui ZA, Mahmood I (1996) Biological control of plant parasitic nematodes by fungi: a review. Bioresour Technol 58:229–239. https://doi.org/10.1016/S0960-8524(96)00122-8
Siddiqui MH, Al-Whaibi MH, Basalah MO (2011) Interactive effect of calcium and gibberellin on nickel tolerance in relation to antioxidant systems in Triticum aestivum L. Protoplasma 248:503–511. https://doi.org/10.1007/s00709-010-0197-6
Singh DP, Singh HB (2008) Microbial wealth regulates crop quality and soil health. pp 25–26
Singh J, Yadav AN (2020) Natural bioactive products in sustainable agriculture. Springer, Singapore
Singh A, Kumari R, Yadav AN, Mishra S, Sachan A, Sachan SG (2020) Tiny microbes, big yields: microorganisms for enhancing food crop production sustainable development. In: Rastegari AA, Yadav AN, Awasthi AK, Yadav N (eds) Trends of microbial biotechnology for sustainable agriculture and biomedicine systems: diversity and functional perspectives. Elsevier, Amsterdam, pp 1–16. https://doi.org/10.1016/B978-0-12-820526-6.00001-4
Sivan A (1989) The possible role of competition between Trichoderma harzianum and Fusarium oxysporum on rhizosphere colonization. Phytopathology 79:198. https://doi.org/10.1094/phyto-79-198
Sonaimuthu V, Krishnamoorthy S, Johnpaul M (2010) Taxol producing endophytic fungus Fusarium culmorum SVJM072 from medicinal plant of Tinospora cordifolia-a first report. J Biotechnol 150:425–425. https://doi.org/10.1016/j.jbiotec.2010.09.588
Song YC, Li H, Ye YH, Shan CY, Yang YM, Tan RX (2004) Endophytic naphthopyrone metabolites are co-inhibitors of xanthine oxidase, SW1116 cell and some microbial growths. FEMS Microbiol Lett 241:67–72
Song F, Dai H, Tong Y, Ren B, Chen C, Sun N et al (2010) Trichodermaketones A-D and 7-O-methylkoninginin D from the marine fungus Trichoderma koningii. J Nat Prod 73:806–810. https://doi.org/10.1021/np900642p
Strobel G, Daisy B (2003) Bioprospecting for microbial endophytes and their natural products. Microbiol Mol Biol Rev 67:491–502. https://doi.org/10.1128/mmbr.67.4.491-502.2003
Sudha V, Govindaraj R, Baskar K, Al-Dhabi NA, Duraipandiyan V (2016) Biological properties of endophytic fungi. Braz Arch Biol Technol 59:1–7. https://doi.org/10.1590/1678-4324-2016150436
Sui Y, Wisniewski M, Droby S, Liu J (2015) Responses of yeast biocontrol agents to environmental stress. Appl Environ Microbiol 81:2968–2975. https://doi.org/10.1128/AEM.04203-14
Suman A, Yadav AN, Verma P (2016) Endophytic microbes in crops: diversity and beneficial impact for sustainable agriculture. In: Singh D, Abhilash P, Prabha R (eds) Microbial inoculants in sustainable agricultural productivity, research perspectives. Springer, New Delhi, pp 117–143. https://doi.org/10.1007/978-81-322-2647-5_7
Sun C, Johnson JM, Cai D, Sherameti I, Oelmüller R, Lou B (2010) Piriformospora indica confers drought tolerance in Chinese cabbage leaves by stimulating antioxidant enzymes, the expression of drought-related genes and the plastid-localized CAS protein. J Plant Physiol 167:1009–1017. https://doi.org/10.1016/j.jplph.2010.02.013
Sun C, Shao Y, Vahabi K, Lu J, Bhattacharya S, Dong S et al (2014) The beneficial fungus Piriformospora indica protects Arabidopsis from Verticillium dahliae infection by down regulation plant defense responses. BMC Plant Biol 14:1–16. https://doi.org/10.1186/s12870-014-0268-5
Suwan S, Isobe M, Kanokmedhakul S, Lourit N, Kanokmedhakul K, Soytong K et al (2000) Elucidation of high micro-heterogeneity of an acidic-neutral trichotoxin mixture from Trichoderma harzianum by electrospray ionization quadrupole time-of-flight mass spectrometry. J Mass Spectrom 35:1438–1451. https://doi.org/10.1002/1096-9888(200012)35:12<1438::AID-JMS80>3.0.CO;2-Q
Swaby RJ (1949) The relationship between micro-organisms and soil aggregation. J Gen Microbiol 3:236–254. https://doi.org/10.1099/00221287-3-2-236
Tan RX, Zou WX (2001) Endophytes: a rich source of functional metabolites. Nat Prod Rep 18:448–459. https://doi.org/10.1039/b100918o
Tanaka A, Tapper BA, Popay A, Parker EJ, Scott B (2005) A symbiosis expressed non-ribosomal peptide synthetase from a mutualistic fungal endophyte of perennial ryegrass confers protection to the symbiotum from insect herbivory. Mol Microbiol 57:1036–1050. https://doi.org/10.1111/j.1365-2958.2005.04747.x
Tintjer T, Rudgers JA (2006) Grass-herbivore interactions altered by strains of a native endophyte. New Phytol 170:513–521. https://doi.org/10.1111/j.1469-8137.2006.01720.x
Treeby T, Bag PM (1992) The role of mycorrhizal fungi and non-mycorrhizal micro-organisms in iron nutrition of citrus. Soil Biol Biochem 24:857–864
Turbyville TJ, Wijeratne EMK, Liu MX, Burns AM, Seliga CJ, Luevano LA et al (2006) Search for Hsp90 inhibitors with potential anticancer activity: isolation and SAR studies of radicicol and monocillin I from two plant-associated fungi of the Sonoran desert. J Nat Prod 69:178–184. https://doi.org/10.1021/np058095b
Vadassery J, Ritter C, Venus Y, Camehl I, Varma A, Shahollari B et al (2008) The role of auxins and cytokinins in the mutualistic interaction between Arabidopsis and Piriformospora indica. Mol Plant-Microbe Interact 21:1371–1383. https://doi.org/10.1094/MPMI-21-10-1371
Vahabi K, Sherameti I, Bakshi M, Mrozinska A, Ludwig A, Oelmüller R (2015a) Microarray analyses during early and later stages of the Arabidopsis/Piriformospora indica interaction. Genomics Data 6:16–18. https://doi.org/10.1016/j.gdata.2015.07.019
Vahabi K, Sherameti I, Bakshi M, Mrozinska A, Ludwig A, Reichelt M et al (2015b) The interaction of Arabidopsis with Piriformospora indica shifts from initial transient stress induced by fungus-released chemical mediators to a mutualistic interaction after physical contact of the two symbionts. BMC Plant Biol 15:1–15. https://doi.org/10.1186/s12870-015-0419-3
Van Wees SC, Van der Ent S, Pieterse CM (2008) Plant immune responses triggered by beneficial microbes. Curr Opin Plant Biol 11:443–448. https://doi.org/10.1016/j.pbi.2008.05.005
Varma A, Bakshi M, Lou B, Hartmann A, Oelmueller R (2012) Piriformospora indica: a novel plant growth-promoting mycorrhizal fungus. Agric Res 1:117–131. https://doi.org/10.1007/s40003-012-0019-5
Vega FE, Goettel MS, Blackwell M, Chandler D, Jackson MA, Keller S et al (2009) Fungal entomopathogens: new insights on their ecology. Fungal Ecol 2:149–159. https://doi.org/10.1016/j.funeco.2009.05.001
Venkateswarulu N, Shameer S, Bramhachari PV, Basha SKT, Nagaraju C, Vijaya T (2018) Isolation and characterization of plumbagin (5- hydroxyl- 2- methylnaptalene-1,4-dione) producing endophytic fungi Cladosporium delicatulum from endemic medicinal plants: Isolation and characterization of plumbagin producing endophytic fungi from endemic. Biotechnol Rep 20:e00282. https://doi.org/10.1016/j.btre.2018.e00282
Vero S, Garmendia G, González MB, Bentancur O, Wisniewski M (2013) Evaluation of yeasts obtained from Antarctic soil samples as biocontrol agents for the management of postharvest diseases of apple (Malus × domestica). FEMS Yeast Res 13:189–199. https://doi.org/10.1111/1567-1364.12021
Villa F, Cappitelli F, Cortesi P, Kunova A (2017) Fungal biofilms: targets for the development of novel strategies in plant disease management. Front Microbiol 8:1–10. https://doi.org/10.3389/fmicb.2017.00654
Vimal SR, Singh JS, Arora NK, Singh S (2017) Soil-plant-microbe interactions in stressed agriculture management: a review. Pedosphere 27:177–192. https://doi.org/10.1016/S1002-0160(17)60309-6
Vinale F, Sivasithamparam K, Ghisalberti EL, Marra R, Woo SL, Lorito M (2008) Trichoderma-plant-pathogen interactions. Soil Biol Biochem 40:1–10. https://doi.org/10.1016/j.soilbio.2007.07.002
Vinale F, Ghisalberti EL, Sivasithamparam K, Marra R, Ritieni A, Ferracane R et al (2009) Factors affecting the production of Trichoderma harzianum secondary metabolites during the interaction with different plant pathogens. Lett Appl Microbiol 48:705–711. https://doi.org/10.1111/j.1472-765X.2009.02599.x
Vinale F, Nigro M, Sivasithamparam K, Flematti G, Ghisalberti EL, Ruocco M et al (2013) Harzianic acid: a novel siderophore from Trichoderma harzianum. FEMS Microbiol Lett 347:123–129. https://doi.org/10.1111/1574-6968.12231
Viterbo A, Inbar J, Hadar Y, Chet I (2007) Plant disease biocontrol and induced resistance via fungal mycoparasites. In: Environmental and microbial relationships. Springer, Berlin, pp 127–146. https://doi.org/10.1007/978-3-540-71840-6_8
Volpin H, Phillips DA, Okon Y, Kapulnik Y (1995) Suppression of an isoflavonoid phytoalexin defense response in mycorrhizal alfalfa roots. Plant Physiol 108:1449–1454. https://doi.org/10.1104/pp.108.4.1449
Vyas P, Bansal A (2018) Fungal endophytes: role in sustainable agriculture. Fungi their role. Sustain Dev Curr Perspect 7:107–120. https://doi.org/10.1007/978-981-13-0393-7_7
Waller F, Achatz B, Baltruschat H, Fodor J, Becker K, Fischer M et al (2005) The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield. Proc Natl Acad Sci U S A 102:13386–13391. https://doi.org/10.1073/pnas.0504423102
Wang B, Qiu YL (2006) Phylogenetic distribution and evolution of mycorrhizas in land plants. Mycorrhiza 16:299–363. https://doi.org/10.1007/s00572-005-0033-6
Waqas M, Khan AL, Kamran M, Hamayun M, Kang SM, Kim YH et al (2012) Endophytic fungi produce gibberellins and indoleacetic acid and promotes host-plant growth during stress. Molecules 17:10754–10773. https://doi.org/10.3390/molecules170910754
Watts R, Dahiya J, Chaudhary K, Tauro P (1988) Isolation and characterization of a new antifungal metabolite of Trichoderma reesei. Plant Soil 107:81–84. https://doi.org/10.1007/BF02371547
Webster J, Lomas N (1964) Does Trichoderma viride produce gliotoxin and viridin? Trans Br Mycol Soc 47:535–540. https://doi.org/10.1016/s0007-1536(64)80031-0
Wei Y, Gao Y, Zhang X, Su D, Wang Y, Xu H (2007) Fungal diversity distribution and diversity of Epichloë. Fungal Divers 24:329–345
Wessels JGH (1999) Fungi in their own right. Fungal Genet Biol 27:134–145. https://doi.org/10.1006/fgbi.1999.1125
White PJ, Broadley MR (2003) Calcium in plants. Ann Bot 92:487–511. https://doi.org/10.1093/aob/mcg164
Whitelaw MA (1999) Growth promotion of plants inoculated with phosphate-solubilizing fungi. Adv Agron 69:99–151. https://doi.org/10.1016/S0065-2113(08)60948-7
Wilkinson HH, Siegel MR, Blankenship JD, Mallory AC, Bush LP, Schardl CL (2000) Contribution of fungal loline alkaloids to protection from aphids in a grass-endophyte mutualism. Mol Plant-Microbe Interact 13:1027–1033. https://doi.org/10.1094/MPMI.2000.13.10.1027
Wold WSM, Suzuki I (1976) The citric acid fermentation by Aspergillus niger: regulation by zinc of growth and acidogenesis. Can J Microbiol 22:1083–1092. https://doi.org/10.1139/m76-159
Wu SC, Cao ZH, Li ZG, Cheung KC, Wong MH (2005) Effects of biofertilizer containing N-fixer, P and K solubilizers and AM fungi on maize growth: a greenhouse trial. Geoderma 125:155–166. https://doi.org/10.1016/j.geoderma.2004.07.003
Xu F, Zhang Y, Wang J, Pang J, Huang C, Wu X et al (2008) Benzofuran derivatives from the mangrove endophytic fungus Xylaria sp. (#2508). J Nat Prod 71:1251–1253. https://doi.org/10.1021/np070602x
Yadav AN (2017) Agriculturally important microbiomes: biodiversity and multifarious PGP attributes for amelioration of diverse abiotic stresses in crops for sustainable agriculture. Biomed J Sci Tech Res 1:1–4
Yadav AN (2018) Biodiversity and biotechnological applications of host-specific endophytic fungi for sustainable agriculture and allied sectors. Acta Sci Microbiol 1:01–05
Yadav AN (2019a) Endophytic fungi for plant growth promotion and adaptation under abiotic stress conditions. Acta Sci Agric 3:91–93
Yadav AN (2019b) Fungal white biotechnology: conclusion and future prospects. In: Yadav AN, Singh S, Mishra S, Gupta A (eds) Recent advancement in white biotechnology through fungi, Perspective for sustainable environments, vol 3. Springer, Cham, pp 491–498. https://doi.org/10.1007/978-3-030-25506-0_20
Yadav V, Kumar M, Deep AK, Kumar H, Sharma R, Tripathi T et al (2010) A phosphate transporter from the root endophytic fungus Piriformospora indica plays a role in phosphate transport to the host plant. J Biol Chem 285:26532–26544. https://doi.org/10.1074/jbc.M110.111021
Yadav AN, Kumar R, Kumar S, Kumar V, Sugitha T, Singh B, Chauhan V, Dhaliwal HS, Saxena AK (2017a) Beneficial microbiomes: biodiversity and potential biotechnological applications for sustainable agriculture and human health. J Appl Biol Biotechnol 5:45–57
Yadav AN, Verma P, Kour D, Rana KL, Kumar V, Singh B, Chauahan VS, Sugitha T, Saxena AK, Dhaliwal HS (2017b) Plant microbiomes and its beneficial multifunctional plant growth promoting attributes. Int J Environ Sci Nat Resour 3:1–8. https://doi.org/10.19080/IJESNR.2017.03.555601
Yadav AN, Verma P, Singh B, Chauhan VS, Suman A, Saxena AK (2017c) Plant growth promoting bacteria: biodiversity and multifunctional attributes for sustainable agriculture. Adv Biotechnol Microbiol 5:1–16
Yadav AN, Verma P, Kumar V, Sangwan P, Mishra S, Panjiar N, Gupta VK, Saxena AK (2018) Biodiversity of the genus Penicillium in different habitats. In: Gupta VK, Rodriguez-Couto S (eds) New and future developments in microbial biotechnology and bioengineering, Penicillium system properties and applications. Elsevier, Amsterdam, pp 3–18. https://doi.org/10.1016/B978-0-444-63501-3.00001-6
Yadav AN, Kour D, Rana KL, Yadav N, Singh B, Chauhan VS, Rastegari AA, Hesham AE-L, Gupta VK (2019a) Metabolic engineering to synthetic biology of secondary metabolites production. In: Gupta VK, Pandey A (eds) New and future developments in microbial biotechnology and bioengineering. Elsevier, Amsterdam, pp 279–320. https://doi.org/10.1016/B978-0-444-63504-4.00020-7
Yadav AN, Mishra S, Singh S, Gupta A (2019b) Recent advancement in white biotechnology through fungi, Diversity and enzymes perspectives, vol 1. Springer, Cham
Yadav AN, Singh S, Mishra S, Gupta A (2019c) Recent advancement in white biotechnology through fungi, Perspective for sustainable environments, vol 3. Springer, Cham
Yadav AN, Mishra S, Kour D, Yadav N, Kumar A (2020a) Agriculturally important fungi for sustainable agriculture, Perspective for diversity and crop productivity, vol 1. Springer, Cham
Yadav AN, Rastegari AA, Yadav N, Kour D (2020b) Advances in plant microbiome and sustainable agriculture: diversity and biotechnological applications. Springer, Singapore
Yadav AN, Rastegari AA, Yadav N, Kour D (2020c) Advances in plant microbiome and sustainable agriculture: functional annotation and future challenges. Springer, Singapore
Yadav AN, Singh J, Rastegari AA, Yadav N (2020d) Plant microbiomes for sustainable agriculture. Springer, Cham
Yang B, Wang XM, Ma HY, Yang T, Jia Y, Zhou J et al (2015) Fungal endophyte Phomopsis liquidambari affects nitrogen transformation processes and related microorganisms in the rice rhizosphere. Front Microbiol 6:1–15. https://doi.org/10.3389/fmicb.2015.00982
Yao YQ, Lan F, Qiao YM, Wei JG, Huang RS, Li LB (2017) Endophytic fungi harbored in the root of Sophora tonkinensis Gapnep: diversity and biocontrol potential against phytopathogens. Microbiology 6:1–17. https://doi.org/10.1002/mbo3.437
Yedidia I, Benhamou N, Chet I (1999) Induction of defense responses in cucumber plants (Cucumis sativus L.) by the biocontrol agent Trichoderma harzianum. Appl Environ Microbiol 65:1061–1070
Yedidia I, Benhamou N, Kapulnik Y, Chet I (2000) Induction and accumulation of PR proteins activity during early stages of root colonization by the mycoparasite Trichoderma harzianum strain T-203. Plant Physiol Biochem 38:863–873. https://doi.org/10.1016/S0981-9428(00)01198-0
Yobo KS, Laing MD, Hunter CH (2009) Effects of single and dual applications of selected Trichoderma and Bacillus isolates on performance of dry bean seedlings grown in composted pine bark growth medium under shadehouse conditions. J Plant Nutr 32:1271–1289. https://doi.org/10.1080/01904160903005996
Yong YH, Dai CC, Gao FK, Yang QY, Zhao M (2009) Effects of endophytic fungi on growth and two kinds of terpenoids for Euphorbia pekinensis. Chin Tradit Herb Drug 40:1136–1139
Yu H, Zhang L, Li L, Zheng C, Guo L, Li W, Sun P et al (2010) Recent developments and future prospects of antimicrobial metabolites produced by endophytes. Microbiol Res 165:437–449. https://doi.org/10.1016/j.micres.2009.11.009
Yuan WM, Crawford DL (1995) Characterization of Streptomyces lydicus WYEC108 as a potential biocontrol agent against fungal root and seed rots. Appl Environ Microbiol 61:3119–3128
Yuan Y, Feng H, Wang L, Li Z, Shi Y, Zhao LH et al (2017) Potential of endophytic fungi isolated from cotton roots for biological control against Verticillium wilt disease. PLoS One 12:1–12. https://doi.org/10.1371/journal.pone.0170557
Yue Q, Miller CJ, White JF, Richardson MD (2000) Isolation and characterization of fungal inhibitors from Epichloe 1 festucae. J Agric Food Chem 48:4687–4692
Zafari D, Koushki MM, Bazgir E (2008) Biocontrol evaluation of wheat take-all disease by Trichoderma screened isolates. Afr J Biotechnol 7:3650–3656
Zarea MJ, Hajinia S, Karimi N, Mohammadi Goltapeh E, Rejali F, Varma A (2012) Effect of Piriformospora indica and Azospirillum strains from saline or non-saline soil on mitigation of the effects of NaCl. Soil Biol Biochem 45:139–146. https://doi.org/10.1016/j.soilbio.2011.11.006
Zhang D, Duine JA, Kawai F (2002) The extremely high Al resistance of Penicillium janthinellum F-13 is not caused by internal or external sequestration of Al. BioMetals 15:167–174. https://doi.org/10.1023/A:1015289808484
Zhang HW, Song YC, Tan RX (2006) Biology and chemistry of endophytes. Nat Prod Rep 23:753–771. https://doi.org/10.1039/b609472b
Zhou LS, Tang K, Guo SX (2018) The plant growth-promoting fungus (PGPF) Alternaria sp. A13 markedly enhances salvia miltiorrhiza root growth and active ingredient accumulation under greenhouse and field conditions. Int J Mol Sci 19:1–14. https://doi.org/10.3390/ijms19010270
Zou WX, Meng JC, Lu H, Chen GX, Shi GX, Zhang TY et al (2000) Metabolites of Colletotrichum gloeosporioides, an endophytic fungus in Artemisia mongolica. J Nat Prod 63:1529–1530. https://doi.org/10.1021/np000204t
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The authors are thankful to Vellore Institute of Technology, Vellore, India for providing constant encouragement and infrastructural facilities.
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Selvasekaran, P., Chidambaram, R. (2020). Agriculturally Important Fungi for Crop Protection. In: Yadav, A., Mishra, S., Kour, D., Yadav, N., Kumar, A. (eds) Agriculturally Important Fungi for Sustainable Agriculture. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-030-48474-3_1
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