Skip to main content

Advertisement

Log in

Making an Indian traditional rice variety Mahsuri, bacterial blight resistant using marker-assisted selection

  • Research Article
  • Published:
Journal of Crop Science and Biotechnology Aims and scope Submit manuscript

Abstract

Mahsuri a popular traditional variety and the first rain-fed mega variety of the Indian sub- continent. It is highly susceptible to bacterial leaf blight caused by Xanthomonas oryzae pv.oryzae. Nine best performing families of Mahsuri pyramid containing four bacterial blight resistance genes (Xa4, xa5, xa13 and Xa21) were evaluated for agronomic, yield and its related characters viz. days to 50% flowering, plant height, number of tillers, panicle length, filled grains per panicle, grain weight, and yield under natural and disease pressure conditions for three consecutive wet seasons. In addition these pyramids were also evaluated for three different spacings to find out the optimum spacing under disease free and disease pressure conditions.

Results revealed that under disease free conditions there was no significant difference between the pyramids and the parent for the characters evaluated in each spacing. However characters plant height, number of tillers, panicle length, filled grains per panicle, yield per plant and yield per sq. m. showed significant variation between the different spacings across seasons. Under heavy disease pressure the parent exhibited highly susceptible reaction whereas the pyramid families were highly resistant. A wider spacing had less yield loss when compared to dense planting under BB infestation in case of parent. There was no such yield loss in the pyramid families.

When yield per sq. m. was taken into consideration the 20 × 20 cm spacing showed the highest yield when compared to the other two spacings since number of plants were more. The pyramids insulated the yield loss against bacterial leaf blight and are a gain to the farmers to help overcome the heavy yield losses due to this disease. These pyramids have the potential to replace the parent and can be used directly. In addition they can be used as donors for bacterial blight resistance in any breeding program.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

ANOVA:

analysis of variance

BB:

bacterial blight

CFU:

colony forming units

DFF:

days to 50% flowering

FG/P:

filled grains per panicle

G:

genotype

GW:

grain weight

LSD:

least significant difference

MAS:

marker assisted selection

NT:

number of tillers per plant

PH:

plant height

PL:

panicle length

S:

season

SPC:

spacing

SSR:

simple sequence repeats

STS:

sequence tagged sites

T:

treatment

Xoo :

xanthomonas oryzae pv. Oryzae

Y/P:

yield per plant

References

  • Baloch AW, Soomro AM, Javed MA, Ahmed M, Bughio HR, Bughio MS. 2002. Optimum plant density for high yield in rice (Oryza sativa L.). Asian J. Plant Sci. 1: 114–116

    Article  Google Scholar 

  • Basavaraj SH, Singh VK, Singh A, Singh A, Singh A et al. 2010. Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid. Mol. Breed. 26: 293–305

    Article  CAS  Google Scholar 

  • Blair MW, Mc Couch SR. 1997. Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial blight resistance gene xa5. Theor. Appl. Genet. 95: 174–184

    Article  CAS  Google Scholar 

  • Chandarkar BL, Khan RA. 1981. Optimum spacing for early, medium and late duration tall indica rice cultivars. Oryza 18: 108–110

    Google Scholar 

  • Collard, Iftekharuddaula, Thomson, Pamplona, Mackill. 2008. Relevance of backcross breeding in rice. GCP Online Crop Bioinformatics Course, GCP McClintock Bioinformatics Resource - MAS

    Google Scholar 

  • Debabrata N, Shanti ML, Bose LK, Singh UD, Nayak P. 2008. Pathogenicity association in Xanthomonas oryzae pv. oryzae, the causal organism of rice bacterial blight disease. J. Agric. Biol. Sci. 3:12–26

    Google Scholar 

  • Dellaporta SL, Wood J, Hicks B. 1983. A plant molecular DNA mini preparation. Plant Mol. Biol. Rep. 1: 19–21

    Article  CAS  Google Scholar 

  • Directorate of Rice Research. 2006. Progress Report, Vol. 2, Crop Protection (Entomology, Plant Pathology), pp 353

    Google Scholar 

  • Garret K, Deny S, Frank E, Rouse M, Travers S. 2006. Climate change effects on plant disease: Genomes to ecosystems. Ann. Rev. Plant Pathol. 44: 489–509

    Google Scholar 

  • Hamidul Islam MD, Altaf Hossain SM. 2002. Effect of fertilization and planting density on the yield of two varieties of fine rice. Pak. J. Biol. Sci. 5: 513–516

    Article  Google Scholar 

  • Hittalmani S, Parco A, Mew TV, Zeigler RS, Huang N. 2000. Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor. Appl. Genet. 100: 1121–1128

    Article  CAS  Google Scholar 

  • Huang N, Angeles ER, Domingo J, Magpantay G, Singh S. 1997. Pyramiding of bacterial blight resistance genes in rice: Marker-assisted selection using RFLP and PCR. Theor. Appl. Genet. 95: 313–320

    Article  CAS  Google Scholar 

  • Joseph M, Gopalakrishnan S, Sharma RK, Singh VP, Singh AK, Singh NK, Mohapatra T. 2004. Combining bacterial blight resistance and Basmati quality characteristics by phenotypic and molecular marker-assisted selection in rice. Mol. Breed. 13: 377–387

    Article  CAS  Google Scholar 

  • Karaganilla A, Natural MP, Ou SH. 1973. A comparative study of culture media of Xanthomonas oryzae pv. oryzae. Philipp. Agric. 57: 141–152

    Google Scholar 

  • Kauffman HE, Reddy APK, Hsieh SPY, Merca SD. 1973. An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae. Plant Dis. Rep. 57: 537–541

    Google Scholar 

  • Md. Bahadur Meah. 1987. Effect of nitrogen and plant spac ing on bacterial leaf blight of rice. Curr. Plant Sci. Biotechnol. Agric. 4: 950–954

    Article  Google Scholar 

  • Miah MHN, Karim MA, Rahman MS, Islam MS. 1990. Performance of Nizersail mutants under different row spacings. Bangl. J. Train. Dev. 3: 3–34

    Google Scholar 

  • Narayanan NN, Baisakh N, Oliva NP, Vera Cruz CV, Gnanmanickam SS, Datta K, Datta SK. 2004. Markerassisted selection combined with biolistic transformation for blast and bacterial blight resistance in indica rice (cv.Co39). Mol. Breed. 14: 6–67

    Article  Google Scholar 

  • Ou SH. 1985. Rice disease. 2nd Ed., Common wealth Mycological Institute (CMI), Kew, Surrey, pp 38

    Google Scholar 

  • Reddy APK. 1980. Report on bacterial leaf blight epidemic of rice in Punjab. All India Coordinated Rice Improvement Project. Rajendranagar, Hyderabad, India, pp 1–30

    Google Scholar 

  • Reddy APK. 1989. Bacterial blight: crop loss assessment and disease management In Proc. Int. Workshop Bacterial Blight of Rice. Int. Rice Res. Inst., pp 79–88

    Google Scholar 

  • Ronald PC, Albano B, Tabien LA, Wu K, Mc Couch S, Tanksley S. 1992. Genetic and physical mapping of the rice bacterial blight resistance locus, Xa21. Mol. Gen. Genet. 235: 113–120

    Article  Google Scholar 

  • Salgotra RK, Gupta BB, Millwood RJ, Balasubramanian M, Stewart Jr CN. 2012. Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.). Euphytica 187: 313–323

    Article  CAS  Google Scholar 

  • Sanchez AC, Brar DS, Haung N, Li Z, Khush GS. 2000. Sequence tagged site marker assisted selection for three bacterial blight resistance genes in rice. Crop Sci. 40: 792–797

    Article  CAS  Google Scholar 

  • Shanti ML, George MLC, Cruz CMV, Bernardo MA, Nelson RJ. 2001. Identification of resistance genes effective against rice bacterial blight pathogen in Eastern India. Plant Dis. 85: 506–512

    Article  CAS  Google Scholar 

  • Shanti ML, Shenoy VV. 2005. Evaluation of resistance genes and their pyramids against rice bacterial leaf blight pathogen Xanthomonas oryzae pv. oryzae. Oryza 42: 169–173

    Google Scholar 

  • Shanti ML, Lalitha Devi G, Naveen Kumar G, Shashidhar HE. 2010c. Molecular Marker-Assisted Selection: A tool for insulating parental lines of hybrid rice against bacterial leaf blight. Int. J. Plant Pathol. 1: 114–123

    Article  Google Scholar 

  • Shanti ML, Mohan Kumar Varma C, Premalatha P, Lalitha Devi G, Zehr U, Freeman W. 2010b. Understanding the bacterial blight pathogen combining pathotyping and molecular marker studies. Int. J. Plant Pathol. 1: 58–68

    Article  Google Scholar 

  • Shanti ML, Shenoy VV, Lalitha Devi G, Mohan Kumar V, Premalatha P, Naveen Kumar G, Shashidhar HE, Zehr UB, Freeman H. 2010a. Marker-Assisted breeding for resistance to bacterial leaf blight in popular cultivar and parental lines of hybrid rice. J. Plant Pathol. 92: 495–501

    CAS  Google Scholar 

  • Singh S, Sodhi M, Vikal Y, George MLC, Bala GS, Mangat GS, Garg M, Sidhu JS, Dhaliwal HS. 2003. DNA fingerprinting and virulence analysis of Xanthomonas oryzae pv. oryzae isolates from Punjab, northern India. Euphytica. 130: 107–115

    Article  Google Scholar 

  • Sundaram RM, Vishnupriya MR, Biradar SK, Laha GS, Reddy GA. 2008. Marker-assisted introgression of bacterial blight resistance in Samba Mahsuri, an elite indica rice variety. Euphytica 160: 411–422

    Article  Google Scholar 

  • Weewaroth K, Kadkoa S, Sindhusake C, Chantarated J. 1979. Effect of weeding density on gall midge infestation and rice yields in Northen Thailand. Int. Rice Res. Notes 4: 19

    Google Scholar 

  • Yoshimura S, Umehera Y, Kurata N, Nagamura Y, Sasaki T, Minobe Y, Iwata N. 1996. Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice. Theor. Appl. Genet. 93: 117–122

    Article  CAS  Google Scholar 

  • Yoshimura S, Yoshimura A, Iwata N, Mc Couch SR, Abenes ML, Baraoidan MR, Mew TW, Nelson RJ. 1995. Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers. Mol. Breed. 1: 375–387

    Article  CAS  Google Scholar 

  • Zhang G, Angele ER, Abenes MLP, Khush GS, Huang N. 1996. RAPD and RFLP mapping for the bacterial blight resistance gene xa-13 in rice. Theor. Appl. Genet. 93: 65–70

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lalitha Shanti Marella.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Guvvala, L.D., Koradi, P., Shenoy, V. et al. Making an Indian traditional rice variety Mahsuri, bacterial blight resistant using marker-assisted selection. J. Crop Sci. Biotechnol. 16, 111–121 (2013). https://doi.org/10.1007/s12892-013-0009-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12892-013-0009-6

Key words

Navigation