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Marker-aided selection and validation of various \({ Pi}\) gene combinations for rice blast resistance in elite rice variety ADT 43

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Abstract

Rice blast caused by fungal pathogen Pyricularia oryzae has a major impact on reducing yield potential of rice. In this study, homozygous plants were selected using microsatellite markers from the \(\hbox {BC}_{3}\hbox {F}_{2}\) population pyramided with four major genes in elite rice variety ADT 43. Background and selected lines with various blast resistance gene combinations were screened under natural conditions to study the effects of various gene combinations. Upon inspection of lines with different gene combinations, the three-gene pyramided line Pi54+Pi33+Pi1 was found to be highly resistant with the score of 3.3 followed by other three-gene pyramided lines Pi54+Pi2+Pi1 and Pi33+Pi2+Pi1, with the scores of 3.9 and 3.8, respectively. Two-gene pyramided lines Pi54+Pi1, Pi33+Pi1 and Pi2+Pi1 were found to be moderately resistant with a mean score of 4.0 each. In the case of monogenic lines, positive plants for Pi54 performed almost equal to three-gene pyramided lines with a mean score of 3.6. Lines with Pi2 and Pi1 were found to be moderately resistant and moderately susceptible with the mean scores of 4.1 and 4.5, respectively.

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References

  • Ajayi-Oyetunde O. O., Diers B. W., Lagos-Kutz D., Hill C. B., Hartman G. L., Reuter-Carlson U. et al. 2016 Differential reactions of soybean isolines with combinations of aphid resistance genes Rag1, Rag2, and Rag3 to four soybean aphid biotypes. J. Econ. Entomol. 109, 1431–1437.

    Article  Google Scholar 

  • Arunakumari K., Durgarani C. V., Satturu V., Sarikonda K. R., Chittoor P., Vutukuri B. et al. 2016 Marker-assisted pyramiding of genes conferring resistance against bacterial blight and blast diseases into Indian rice variety MTU1010. Rice Sci. 23, 306–316.

    Article  Google Scholar 

  • Benbouza H., Jacquemin J., Baudoin J. and Mergeai G. 2006 Optimization of a reliable, fast, cheap and sensitive silver staining method to detect SSR markers in polyacrylamide gels. Biotechnol. Agron. Biotechnol. Agron. Soc. Environ. 10, 77–81.

    CAS  Google Scholar 

  • Berruyer R., Adreit H., Milazzo J., Gaillard S., Berger A., Dioh W. et al. 2003 Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1. Theor. Appl. Genet. 107, 1139–1147.

    Article  CAS  PubMed  Google Scholar 

  • Bohnert H. U., Fudal I., Dioh W., Tharreau D., Notteghem J. and Lebrun M. 2004 A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice. Plant Cell 16, 2499–2513.

    Article  PubMed  PubMed Central  Google Scholar 

  • Chen D., Zeigler R. S., Leung H. and Nelson R. J. 1995 Population structure of Pyricularia grisea at two screening sites in the Philippines. Phytopathology 85, 1011–1020.

    Article  Google Scholar 

  • Chen D. H., Zeigler R. S., Ahn S. W. and Nelson R. J. 1996 Phenotypic characterization of the rice blast resistance gene Pi-2 (t). Plant Disease (USA) 80, 52–56.

    Article  Google Scholar 

  • Chen X. W., Li S. G., Ma Y. Q., Li H. Y., Zhou K. D. and Zhu L. H. 2004 Marker-assisted selection and pyramiding for three blast resistance genes, Pi-d (t) 1, Pi-b, Pi-ta2, in rice. Chin. J. Biotechnol. 20, 708–714.

    Google Scholar 

  • Correa-Victoria F. J. 2004 Interactions of gene combinations against rice blast in blast: interaction with rice and control. Kluwer Academic Publishers, Dordrecht.

    Google Scholar 

  • Correa-Victoria F. J., Martinez C., Tharreau F. J., Vales C., Escobar M. and Aricada G. 2002 Gene combination for durable blast resistance in Colombia. Fitopatol. Colomb. 26, 47–54.

    Google Scholar 

  • Divya B. 2012 Marker assisted backcross breeding to introgress blast (Pyricularia oryzae) resistance genes into the susceptible rice (Oryza sativa L.) variety ADT 43. Ph.D. thesis, TNAU, Coimbatore.

  • Divya B., Robin S., Rabindran R., Manjunath H., Valarmathi P. and Joel A. J. 2014 Resistance reaction of gene introgressed lines against rice blast (Pyricularia oryzae) disease. Australas. Plant Pathol. 43, 177–191.

    Article  CAS  Google Scholar 

  • Doyle J. J. 1987 A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11–15.

    Google Scholar 

  • Eizenga G. C., Agrama H. A., Lee F. N., Yan W. and Jia Y., 2006. Identifying novel resistance genes in newly introduced blast resistant rice germplasm. Crop Sci. 46, 1870–1878.

    Article  CAS  Google Scholar 

  • FAOSTAT 2015 Statistical database of food and agriculture. FAO, Rome.

    Google Scholar 

  • Fjellstrom R., Conaway-Bormans C. A., McClung A. M., Marchetti M. A., Shank A. R. and Park W. D. 2004 Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple Pyricularia grisea pathotypes. Crop Sci. 44, 1790–1798.

    Article  CAS  Google Scholar 

  • Fuentes J. L., Correa-Victoria F. J., Escobar F., Prado G., Aricapa G., Duque M. C. et al. 2008 Identification of microsatellite markers linked to the blast resistance gene Pi-1 (t) in rice. Euphytica 160, 295–304.

    Article  CAS  Google Scholar 

  • Fujita D., Yoshimura A. and Yasui H. 2010 Development of near-isogenic lines and pyramided lines carrying resistance genes to green rice leafhopper (Nephotettix cincticeps Uhler) with the Taichung 65 genetic background in rice (Oryza sativa L.). Breed. Sci. 60, 18–27.

    Article  CAS  Google Scholar 

  • Fukuta Y., Tamura K., Hirae M. and Oya S. 1998 Genetic analysis of resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice parental line, Norin-PL6, using RFLP markers. Jpn. J. Breed. 48, 243–249.

    Article  CAS  Google Scholar 

  • Gupta S. K., Rai A. K., Kanwar S. S., Chand D., Singh N. K. and Sharma T. R. 2011 The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice. J. Exp. Bot. 63, 757–772.

    Article  CAS  PubMed  Google Scholar 

  • Hittalmani S., Parco A., Mew T. V., Zeigler R. S. and Huang N. 2000 Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice. Theor. Appl. Genet. 100, 1121–1128.

    Article  CAS  Google Scholar 

  • Joshi R. K. and Nayak S. 2010 Gene pyramiding – a broad spectrum technique for developing durable stress resistance in crops. Biotechnol. Mol. Biol. Rev. 5, 51–60.

    CAS  Google Scholar 

  • Koide Y., Kobayashi N., Xu D. and Fukuta Y. 2009 Resistance genes and selection DNA markers for blast disease in rice (Oryza sativa L.). Jpn. Agric. Res. Q.: JARQ 43, 255–280.

    Article  CAS  Google Scholar 

  • Liu Y., Jia Y., Gealy D., Goad D. M., Caicedo A. L. and Olsen K. M. 2016 Marker development for rice blast resistance gene and application in the USDA rice mini-core collection. Crop Sci. 56, 1001–1008.

    Article  CAS  Google Scholar 

  • Maclean J., Hardy B. and Hettel G. 2013 Rice Almanac: source book for one of the most important economic activities on earth (ed. J. L. Macclean, D. C. Dawe, B. Hardy and G. P. Hettel), \(3{\text{rd}}\) edition, pp. 88. IRRI, Los Banos.

  • Mohanty S. 2013 Trends in global rice consumption. Rice Today 12, 44–45.

    Google Scholar 

  • Nakamori E. and Kosato U. 1949 Theoretical consideration on the backcross method for breeding of rice varieties. Jpn. J. Breed. 3, 10–18.

    Google Scholar 

  • Narayanasamy P. 2011 Detection of fungal pathogens in plants. In Microbial plant pathogens-detection and disease diagnosis (ed. Anonymous), pp 5–199. Springer.

  • Rai A. K., Kumar S. P., Gupta S. K., Gautam N., Singh N. K. and Sharma T. R. 2011 Functional complementation of rice blast resistance gene Pi-kh (Pi54) conferring resistance to diverse strains of Magnaporthe oryzae. J. Plant Biochem. Biotechnol. 20, 55–65.

    Article  CAS  Google Scholar 

  • Selvaraj I., Nagarajan P. and Thiyagarajan K. 2011 Identification of microsatellite (SSR) and RAPD markers linked to rice blast disease resistance gene in rice (Oryza sativa L.). Afr. J. Biotechnol. 10, 3301.

    Article  Google Scholar 

  • Sharma T. R., Rai A. K., Gupta S. K., Vijayan J., Devanna B. N. and Ray S. 2012 Rice blast management through host-plant resistance: retrospect and prospects. Agric. Res. 1, 37–52.

    Article  Google Scholar 

  • Sharma T. R., Madhav M. S., Singh B. K., Shanker P., Jana T. K., Dalal V. et al. 2005 High-resolution mapping, cloning and molecular characterization of the Pi-k h gene of rice, which confers resistance to Magnaporthe grisea. Mol. Genet. Genom. 274, 569–578.

    Article  CAS  Google Scholar 

  • Singh S., Sidhu J. S., Huang N., Vikal Y., Li Z., Brar D. S. et al. 2001 Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106. Theor. Appl. Genet. 102, 1011–1015.

    Article  CAS  Google Scholar 

  • Singh A. K., Gopalakrishnan S., Singh V. P., Prabhu K. V., Mohapatra T., Singh N. K. et al. 2011 Marker assisted selection: a paradigm shift in Basmati breeding. Indian J. Genet. Plant Breed. 71, 120.

    CAS  Google Scholar 

  • Singh V. K., Singh A., Singh S. P., Ellur R. K., Singh D., Gopala Krishnan S. et al. 2013 Marker-assisted simultaneous but stepwise backcross breeding for pyramiding blast resistance genes Piz5 and Pi54 into an elite Basmati rice restorer line ‘PRR78’. Plant Breed. 132, 486–495.

    CAS  Google Scholar 

  • Sirithunya P., Tragoonrung S., Vanavichit A., Pa-In N., Vongsaprom C. and Toojinda T. 2002 Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa). DNA Res. 9, 79–88.

    Article  CAS  PubMed  Google Scholar 

  • Srivastava D., Shamim M., Kumar D., Pandey P., Khan N. A. and Singh K. N. 2014 Morphological and molecular characterization of Pyricularia oryzae causing blast disease in rice (Oryza sativa) from north India. Int. J. Sci. Res. Publ. 4, 1–9.

    Google Scholar 

  • Sundaram R. M., Vishnupriya M. R., Biradar S. K., Laha G. S., Reddy G. A., Rani N. S. et al. 2008 Marker assisted introgression of bacterial blight resistance in Samba Mahsuri, an elite indica rice variety. Euphytica 160, 411–422.

    Article  Google Scholar 

  • Tharreau D., Fudal I., Andriantsimialona D., Utami D., Fournier E., Lebrun M. H. and Nottéghem J. L. 2009 World population structure and migration of the rice blast fungus, Magnaporthe oryzae. In Advances in genetics, genomics and control of rice blast disease, pp. 209–215. Springer, Dordrecht.

  • Vasudevan K., Gruissem W. and Bhullar N. K. 2015 Identification of novel alleles of the rice blast resistance gene Pi54. Sci. Rep. 5, 15678.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoshimura S., Yoshimura A., Iwata N., McCouch S. R., Abenes M. L., Baraoidan M. R. et al. 1995 Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers. Mol. Breed. 1, 375–387.

    Article  CAS  Google Scholar 

  • Zeigler R. S. 1994 Linking blast population analysis to resistance breeding: a proposed strategy for durable resistance. In Rice blast disease (ed. R. S. Zeigler, S. A. Leong and P. S. Teng) pp. 2. International Rice Research Institute, Los Banos.

  • Zeigler R. S., Thome J., Nelson R., Levy M. and Correa-Victoria F. J. 1994 Lineage exclusion: a proposal for linking blast population analysis to rice breeding. In The rice blast disease (ed. R. S. Zeigler, S. A. Leong and P. S. Teng) pp. 269–291. International Rice Research Institute, Los Banos.

    Google Scholar 

  • Zeigler R. S., Cuoc L. X., Scott R. P., Bernardo M. A., Chen D. H., Valent B. et al. 1995 The relationship between lineage and virulence in Pyricularia grisea in the Philippines. Phytopathology 85, 443–451.

    Article  Google Scholar 

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Correspondence to Manonmani Swaminathan.

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Pandian, B.A., Joel, J., Nachimuthu, V.V. et al. Marker-aided selection and validation of various \({ Pi}\) gene combinations for rice blast resistance in elite rice variety ADT 43. J Genet 97, 945–952 (2018). https://doi.org/10.1007/s12041-018-0988-7

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  • DOI: https://doi.org/10.1007/s12041-018-0988-7

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