Abstract
Mechanical and mechanochemical models of pattern formation in biological tissues have been used to study a variety of biomedical systems, particularly in developmental biology, and describe the physical interactions between cells and their local surroundings. These models in their original form consist of a balance equation for the cell density, a balance equation for the density of the extracellular matrix (ECM), and a forcebalance equation describing the mechanical equilibrium of the cellECM system. Under the assumption that the cellECM system can be regarded as an isotropic linear viscoelastic material, the forcebalance equation is often defined using the Kelvin–Voigt model of linear viscoelasticity to represent the stress–strain relation of the ECM. However, due to the multifaceted biophysical nature of the ECM constituents, there are rheological aspects that cannot be effectively captured by this model and, therefore, depending on the pattern formation process and the type of biological tissue considered, other constitutive models of linear viscoelasticity may be better suited. In this paper, we systematically assess the pattern formation potential of different stress–strain constitutive equations for the ECM within a mechanical model of pattern formation in biological tissues. The results obtained through linear stability analysis and the dispersion relations derived therefrom support the idea that fluidlike constitutive models, such as the Maxwell model and the Jeffrey model, have a pattern formation potential much higher than solidlike models, such as the Kelvin–Voigt model and the standard linear solid model. This is confirmed by the results of numerical simulations, which demonstrate that, all else being equal, spatial patterns emerge in the case where the Maxwell model is used to represent the stress–strain relation of the ECM, while no patterns are observed when the Kelvin–Voigt model is employed. Our findings suggest that further empirical work is required to acquire detailed quantitative information on the mechanical properties of components of the ECM in different biological tissues in order to furnish mechanical and mechanochemical models of pattern formation with stress–strain constitutive equations for the ECM that provide a more faithful representation of the underlying tissue rheology.
1 Introduction
Pattern formation resulting from spatial organisation of cells is at the basis of a broad spectrum of physiological and pathological processes in living tissues (Jernvall et al. 2003). While the first formal exploration of pattern and form from a mathematical (strictly speaking, geometrical) perspective goes back over a century to D’Arcy Thompson’s “On Growth and Form” (Thompson 1917), the modern development of mathematical models for this biological phenomenon started halfway through the twentieth century to elucidate the mechanisms that underly morphogenesis and embryogenesis (Maini 2005). Since then, a number of mathematical models for the formation of cellular patterns have been developed (Urdy 2012). Amongst these, particular attention has been given to reaction–diffusion models and mechanochemical models of pattern formation (Murray 2001).
Reaction–diffusion models of pattern formation, first proposed by Turing in his seminal 1952 paper (Turing 1952) and then further developed by Gierer and Meinhardt (Gierer and Meinhardt 1972; Meinhardt 1982), apply to scenarios in which the heterogeneous spatial distribution of some chemicals (i.e. morphogens) acts as a template (i.e. a prepattern) according to which cells organise and arrange themselves in different sorts of spatial patterns. These models are formulated as coupled systems of reaction–diffusion equations for the spacetime dynamics of the concentrations of two morphogens, with different reaction kinetics depending on the biological problem at stake. Such systems exhibit diffusiondriven instability whereby homogenous steady states are driven unstable by diffusion, resulting in the formation of prepatterns, provided that the diffusion rate of one of the morphogens is sufficiently higher than the other (Maini et al. 1997; Maini and Woolley 2019; Maini et al. 2012; Murray 1981).
On the other hand, mechanochemical models of pattern formation, first proposed by Murray, Oster and coauthors in the 1980s (Murray and Oster 1984a, b; Murray et al. 1983; Oster et al. 1983), describe spatial organisation of cells driven by the mechanochemical interaction between cells and the extracellular matrix (ECM)—i.e. the substratum composed of collagen fibres and various macromolecules, partly produced by the cells themselves, in which cells are embedded (Harris 1984; Harris et al. 1981). These models in their original form consist of systems of partial differential equations (PDEs) comprising a balance equation for the cell density, a balance equation for the ECM density, and a forcebalance equation describing the mechanical equilibrium of the cellECM system (Murray and Maini 1989; Murray et al. 1988). When chemical processes are neglected, these models reduce to mechanical models of pattern formation (Byrne and Chaplain 1996; Murray and Maini 1989; Murray et al. 1988).
While reaction–diffusion models well explain the emergence and characteristics of patterns arising during chemical reactions (Castets et al. 1990; Maini et al. 1997; Maini and Woolley 2019), as well as pigmentation patterns found on shells (Meinhardt 2009) or animal coatings (Kondo and Asai 1995; Murray 2001), various observations seem to suggest they may not always be the most suited models to study morphogenic pattern formation (Bard and Lauder 1974; Brinkmann et al. 2018; Maini and Woolley 2019). For instance, experiments up to this day seem to fail in the identification of appropriate morphogens and overall molecular interactions predicted by Turing models in order for de novo patterns to emerge may be too complex. In addition, unrealistic parameter values would be required in order to reproduce experimentally observable patterns and the models appear to be too sensitive to parameter changes, hence lacking the robustness required to capture precise patterns. These considerations indicate that other mechanisms, driven for instance by significant mechanical forces, should be considered since solely chemical interactions may not suffice in explaining the emergence of patterns during morphogenesis. Hence, mechanochemical models may be better suited. Interestingly, this need to change modelling framework sometimes arises within the same biological application as time progresses. For instance, supracellular organisation in the early stages of embryonic development closely follows morphogenic chemical patterns, but further tissuelevel organisation requires additional cooperation of osmotic pressures and mechanical forces (Petrolli et al. 2019). Similarly, pattern formation during vasculogenesis is generally divided into an early stage highly driven by cell migration following chemical cues, and a later one dominated by mechanical interactions between the cells and the ECM (Ambrosi et al. 2005; Scianna et al. 2013; Tosin et al. 2006). Finally, purely mechanical models are a useful tool for studying the isolated role of mechanical forces and can capture observed phenomena without the inclusion of chemical cues (Petrolli et al. 2019; SerraPicamal et al. 2012; Tlili et al. 2018).
Over the years, mechanochemical and mechanical models of pattern formation in biological tissues have been used to study a variety of biomedical problems, including morphogenesis and embryogenesis (Brinkmann et al. 2018; Cruywagen and Murray 1992; Maini and Murray 1988; Murray and Maini 1986; Murray et al. 1988; Murray and Oster 1984a, b; Murray et al. 1983; Oster et al. 1983; Perelson et al. 1986), angiogenesis and vasculogenesis (Manoussaki 2003; Scianna et al. 2013; Tranqui and Tracqui 2000), cytoskeleton reorganisation (Alonso et al. 2017; Lewis and Murray 1991), wound healing and contraction (Javierre et al. 2009; Maini et al. 2002; Olsen et al. 1995; Tranquillo and Murray 1992), and stretch marks (Gilmore et al. 2012). These models have also been used to estimate the values of cell mechanical parameters, with a particular focus on cell traction forces (Barocas et al. 1995; Barocas and Tranquillo 1994; Bentil and Murray 1991; Ferrenq et al. 1997; Moon and Tranquillo 1993; Perelson et al. 1986). The roles that different biological processes play in the formation of cellular patterns can be disentangled via linear stability analysis (LSA) of the homogenous steady states of the model equations—i.e. investigating what parameters of the model, and thus what biological processes, can drive homogenous steady states unstable and promote the emergence of cell spatial organisation. Further insight into certain aspects of pattern formation in biological tissues can also be provided by nonlinear stability analysis of the homogenous steady states (Cruywagen and Murray 1992; Lewis and Murray 1991; Maini and Murray 1988).
These models usually rely on the assumption that the cellECM system can be regarded as an isotropic linear viscoelastic material. This is clearly a simplification due to the nonlinear viscoelasticity and anisotropy of soft tissues (Bischoff et al. 2004; Huang et al. 2005; Liu and Bilston 2000; Nasseri et al. 2002; Snedeker et al. 2005; Valtorta and Mazza 2005; Verdier 2003), a simplification that various rheological tests conducted on biological tissues have nonetheless shown to be justified in the regime of small strains (Bilston et al. 1997; Liu and Bilston 2000; Nasseri et al. 2002; Valtorta and Mazza 2005), which is the one usually of interest in the applications of such models. Under this assumption, the forcebalance equation for the cellECM system is often defined using the Kelvin–Voigt model of linear viscoelasticity to represent the stress–strain relation of the ECM (Byrne and Chaplain 1996; Murray et al. 1988; Oster et al. 1983). However, due to the multifaceted biophysical nature of the ECM constituents, there are rheological aspects that cannot be effectively captured by the Kelvin–Voigt model and, therefore, depending on the pattern formation process and the type of biological tissue considered, other constitutive models of linear viscoelasticity may be better suited (Barocas and Tranquillo 1994). In this regard, Byrne and Chaplain (1996) demonstrated that, ceteris paribus, using the Maxwell model of linear viscoelasticity to describe the stress–strain relation of the ECM in place of the Kelvin–Voigt model can lead to different dispersion relations with a higher pattern formation potential. This suggests that a more thorough investigation of the capability of different stress–strain constitutive equations of producing spatial patterns is required.
With this aim, here we complement and further develop the results presented in Byrne and Chaplain (1996) by systematically assessing the pattern formation potential of different stress–strain constitutive equations for the ECM within a mechanical model of pattern formation in biological tissues (Byrne and Chaplain 1996; Murray et al. 1988; Oster et al. 1983). Compared to the work of Byrne and Chaplain (1996), here we consider a wider range of constitutive models, we allow cell traction forces to be reduced by cell–cell contact inhibition, and undertake numerical simulations of the model equations showing the formation of cellular patterns both in one and in two spatial dimensions. A related study has been conducted by Alonso et al. (2017), who considered a mathematical model of pattern formation in the cell cytoplasm.
The paper is structured as follows. In Sect. 2, we recall the essentials of viscoelastic materials and provide a brief summary of the onedimensional stress–strain constitutive equations that we examine. In Sect. 3, we describe the onedimensional mechanical model of pattern formation in biological tissues that is used in our study, which follows closely the one considered in Byrne and Chaplain (1996); Murray et al. (1988); Oster et al. (1983). In Sect. 4, we carry out a linear stability analysis (LSA) of a biologically relevant homogeneous steady state of the model equations, derive dispersion relations when different stress–strain constitutive equations for the ECM are used and investigate how the model parameters affect the dispersion relations obtained. In Sect. 5, we verify key results of LSA via numerical simulations of the model equations. In Sect. 6, we complement these findings with the results of numerical simulations of a twodimensional version of the mechanical model of pattern formation considered in the previous sections. Section 7 concludes the paper and provides an overview of possible research perspectives.
2 Essentials of Viscoelastic Materials and Stress–Strain Constitutive Equations
In this section, we first recall the main properties of viscoelastic materials (see Sect. 2.1). Then, we briefly present the onedimensional stress–strain constitutive equations that are considered in our study and summarise the main rheological properties of linear viscoelastic materials that they capture (see Sect. 2.2). Most of the contents of this section can be found in standard textbooks, such as Findley et al. (1976) [chapters 1 and 5] and Mase (1970), and are reported here for the sake of completeness. Specific considerations of and applications to living tissues can be found in Fung (1993).
2.1 Essentials of Viscoelastic Materials
As the name suggests, viscoelastic materials exhibit both viscous and elastic characteristics, and the interplay between them may result in a wide range of rheological properties that can be examined through creep and stress relaxation tests. During a creep test, a constant stress is first applied to a specimen of material and then removed, and the time dynamic of the correspondent strain is tracked. During a stress relaxation test, a constant strain is imposed on a specimen of material and the evolution in time of the induced stress is observed (Findley et al. 1976).
Here, we list the main properties of viscoelastic materials that may be observed during the first phase of a creep test (see properties 1a–1c), during the recovery phase, that is, when the constant stress is removed from the specimen (see properties 2a–2c), and during a stress relaxation test (see property 3).

1a
Instantaneous elasticity. As soon as a stress is applied, an instantaneous corresponding strain is observed.

1b
Delayed elasticity. While the instantaneous elastic response to a stress is a purely elastic behaviour, due to the viscous nature of the material a delayed elastic response may also be observed. In this case, under constant stress the strain slowly and continuously increases at decreasing rate.

1c
Viscous flow. In some viscoelastic materials, under a constant stress, the strain continues to grow within the viscoelastic regime (i.e. before plastic deformation). In particular, viscous flow occurs when the strain increases linearly with time and stops growing at removal of the stress only.

2a
Instantaneous recovery. When the stress is removed, an instantaneous recovery (i.e. an instantaneous strain decrease) is observed because of the elastic nature of the material.

2b
Delayed recovery. Upon removal of the stress, a delayed recovery (i.e. a continuous decrease in the strain at decreasing rate) occurs.

2c
Permanent set. While elastic strain is reversible, in viscoelastic materials a nonzero strain, known as “permanent set” or “residual strain”, may persist even when the stress is removed.

3
Stress relaxation. Under constant strain, gradual relaxation of the induced stress occurs. In some cases, this may even culminate in total stress relaxation (i.e. the stress decays to zero).
The subset of these properties exhibited by a viscoelastic material will depend on—and hence define—the type of material being tested. Moreover, during each phase of the creep test, more than one of the above properties may be observed. For instance, a Maxwell material under constant stress will exhibit instantaneous elasticity followed by viscous flow.
2.2 OneDimensional Stress–Strain Constitutive Equations Examined in Our Study
In this section, we briefly describe the different constitutive equations that are used in our study to represent the stress–strain relation of the ECM. In general, these equations can be used to predict how a viscoelastic material will react to different loading conditions, in one spatial dimension, and rely on the assumption that viscous and elastic characteristics of the material can be modelled, respectively, via linear combinations of dashpots and springs, as illustrated in Fig. 1. Different stress–strain constitutive equations correspond to different arrangements of these elements and capture different subsets of the rheological properties summarised in the previous section (see Table 2). In the remainder of this section, we will denote the stress and the strain at position x and time t by \(\sigma (t,x)\) and \(\varepsilon (t,x)\), respectively.
Linear elastic model. When viscous characteristics are neglected, a linear viscoelastic material can be modelled as a purely elastic spring with elastic modulus (i.e. Young’s modulus) \(E>0\), as illustrated in Fig. 1a. In this case, the stress–strain constitutive equation is given by Hooke’s spring law for continuous media, that is,
Linear viscous model. When elastic characteristics are neglected, a linear viscoelastic material can be modelled as a purely viscous damper of viscosity \(\eta >0\), as illustrated in Fig. 1b. In this case, the stress–strain constitutive equation is given by Newton’s law of viscosity, that is,
Kelvin–Voigt model. The Kelvin–Voigt model, also known as the Voigt model, relies on the assumption that viscous and elastic characteristics of a linear viscoelastic material can simultaneously be captured by considering a purely elastic spring with elastic modulus E and a purely viscous damper of viscosity \(\eta \) in parallel, as illustrated in Fig. 1c. The corresponding stress–strain constitutive equation is
Maxwell model. The Maxwell model relies on the assumption that viscous and elastic characteristics of a linear viscoelastic material can be captured by considering a purely elastic spring with elastic modulus E and a purely viscous damper of viscosity \(\eta \) in series, as illustrated in Fig. 1d. The corresponding stress–strain constitutive equation is
Standard linear solid (SLS) model. The SLS model, also known as the Kelvin model, relies on the assumption that viscous and elastic characteristics of a linear viscoelastic material can be captured by considering a Kelvin arm of elastic modulus \(E_1\) and viscosity \(\eta \) in series with a purely elastic spring of elastic modulus \(E_2\), as illustrated in Fig. 1e. The corresponding stress–strain constitutive equation is Mase (1970)
Jeffrey model. The Jeffrey model, also known as the OldroydB or 3parameter viscous model, relies on the assumption that viscous and elastic characteristics of a linear viscoelastic material can be captured by considering a Kelvin arm of elastic modulus E and viscosity \(\eta _1\) in series with a purely viscous damper of viscosity \(\eta _2\), as illustrated in Fig. 1f. The corresponding stress–strain constitutive equation is
Generic 4parameter model. The following stress–strain constitutive equation encompasses all constitutive models of linear viscoelasticity whereby a combination of purely elastic springs and purely viscous dampers, up to a total of four elements, and therefore 4 parameters, is considered
Here, the nonnegative, real parameters \(a_0, a_1, a_2, b_0, b_1, b_2\) depend on the elastic moduli and the viscosities of the underlying combinations of springs and dampers. When these parameters are defined as in Table 1, the generic 4parameter constitutive model (7) reduces to the specific stress–strain constitutive equations (1)–(6). For convenience of notation, we define the differential operators
so that the stress–strain constitutive equation (7) can be rewritten in the following compact form
A summary of the rheological properties of linear viscoelastic materials listed in Sect. 2.1 that are captured by the onedimensional stress–strain constitutive Eqs. (1)–(6) is provided in Table 2. These properties can be examined through mathematical procedures that mimic creep and stress relaxation tests (Findley et al. 1976). Notice that, for all these constitutive models, instantaneous elasticity correlates with instantaneous recovery, delayed elasticity correlates with delayed recovery, and viscous flow correlates with permanent set. Materials are said to be more solidlike when their elastic response dominates their viscous response, and more fluidlike in the opposite case (Nargess and Yanlan 2021). For this reason, models of linear viscoelasticity that capture viscous flow and, as a consequence, permanent set—such as the Maxwell model and the Jeffrey model—are classified as “fluidlike models”, while those which do not— such as the Kelvin–Voigt model and the SLS model—are classified as “solidlike models”. In the remainder of the paper, we are going to include the linear viscous model in the fluidlike class and the linear elastic model in the solidlike class, as they capture—or do not capture—the relevant properties, even if they are not models of viscoelasticity per se.
3 A OneDimensional Mechanical Model of Pattern Formation
We consider a onedimensional region of tissue and represent the normalised densities of cells and ECM at time \(t\in [0,T]\) and position \(x \in [\ell ,L]\) by means of the nonnegative functions n(t, x) and \(\rho (t,x)\), respectively. We let u(t, x) model the displacement of a material point of the cellECM system originally at position x, which is induced by mechanical interactions between cells and the ECM—i.e. cells pull on the ECM in which they are embedded, thus inducing ECM compression and densification which in turn cause a passive form of cell repositioning (Van Helvert et al. 2018).
3.1 Dynamics of the Cells
Following Murray et al. (1988); Oster et al. (1983), we consider a scenario where cells change their position according to a combination of: (i) undirected, random movement, which we describe through Fick’s first law of diffusion with diffusivity (i.e. cell motility) \(D>0\); (ii) haptotaxis (i.e. cell movement up the density gradient of the ECM) with haptotactic sensitivity \(\alpha >0\); (iii) passive repositioning caused by mechanical interactions between cells and the ECM, which is modelled as an advection with velocity field \(\partial _{t}u\). Moreover, we model variation of the normalised cell density caused by cell proliferation and death via logistic growth with intrinsic growth rate \(r>0\) and unitary local carrying capacity. Under these assumptions, we describe cell dynamics through the following balance equation for n(t, x)
subject to suitable initial and boundary conditions.
3.2 Dynamics of the ECM
As was done for the cell dynamics, in a similar manner we model compression and densification of the ECM induced by cellECM interactions as an advection with velocity field \(\partial _{t}u\). Furthermore, as in Murray et al. (1988); Oster et al. (1983), we neglect secretion of ECM components by the cells since this process occurs on a slower time scale compared to mechanical interactions between cells and the ECM. Under these assumptions, we describe the cell dynamics through the following transport equation for \(\rho (t,x)\)
subject to suitable initial and boundary conditions.
3.3 ForceBalance Equation for the CellECM System
Following Murray et al. (1988); Oster et al. (1983), we represent the cellECM system as a linear viscoelastic material with low Reynolds number (i.e. inertial terms are negligible compared to viscous terms) and we assume the cellECM system to be in mechanical equilibrium (i.e. traction forces generated by the cells are in mechanical equilibrium with viscoelastic restoring forces developed in the ECM and any other external forces). Under these assumptions, the forcebalance equation for the cellECM system is of the form
where \(\sigma _m(t,x)\) is the contribution to the stress of the cellECM system coming from the ECM, \(\sigma _c(t,x)\) is the contribution to the stress of the cellECM system coming from the cells, and F(t, x) is the external force per unit matrix density, which comes from the surrounding tissue that constitutes the underlying substratum to which the ECM is attached.
The stress \(\sigma _c\) is related to cellular traction forces acting on the ECM and is defined as
Definition (13) relies on the assumption that the stress generated by cell traction on the ECM is proportional to the cell density n and—in the short range—the ECM density \(\rho \), while the term \(\beta \, \partial ^2_{xx}\rho \) accounts for longrange cell traction effects, with \(\beta \) being the longrange traction proportionality constant. The factor of proportionality is given by a positive parameter, \(\tau \), which measures the average traction force generated by a cell, multiplied by a nonnegative and monotonically decreasing function of the cell density, f(n), which models the fact that the average traction force generated by a cell is reduced by cellcell contact inhibition (Murray 2001). The parameter \(\lambda \ge 0\) measures the level of cell traction force inhibition and assuming \(\lambda =0\) corresponds to neglecting the reduction in the cell traction forces caused by cellular crowding.
The stress \(\sigma _m\) is given by the stress–strain constitutive equation that is used for the ECM, which we choose to be the general constitutive model (9) with the strain \(\varepsilon (t,x)\) being given by the gradient of the displacement u(t, x), that is, \(\varepsilon =\partial _{x}u\). Therefore, we define the stress–strain relation of the ECM via the following equation
where the differential operators \({\mathcal {L}}_a\) and \({\mathcal {L}}_b\) are defined according to (8).
Assuming the surrounding tissue to which the ECM is attached to be a linear elastic material (Murray 2001), the external body force F can be modelled as a restoring force proportional to the cellECM displacement, that is,
Here, the parameter \(s>0\) represents the elastic modulus of the surrounding tissue.
In order to obtain a closed equation for the displacement u(t, x), we apply the differential operator \({\mathcal {L}}_a[\,\cdot \,]\) to the forcebalance Eq. (12) and then substitute (13)–(15) into the resulting equation. In so doing, we find
that is,
Finally, to close the system, Eq. (16) needs to be supplied with suitable initial and boundary conditions.
3.4 Boundary Conditions
We close our mechanical model of pattern formation defined by the system of PDEs (10), (11) and (16) with the following boundary conditions
Here, the conditions on the derivatives of n, \(\rho \) and u ensure that the fluxes in Eqs. (10) and (11), and the overall stress \((\sigma _m +\sigma _c)\) in Eq. (16), are periodic on the boundary, i.e. they ensure that
with \(\sigma _m\) given as a function of \(\partial _{x}u\) in Eq. (14), according to the selected constitutive model. The periodic boundary conditions (17) reproduce a biological scenario in which the spatial region considered is part of a larger area of tissue whereby similar dynamics of the cells and the ECM occur.
4 Linear Stability Analysis and Dispersion Relations
In this section, we carry out LSA of a biologically relevant homogeneous steady state of the system of PDEs (10), (11) and (16) (see Sect. 4.1) and we compare the dispersion relations obtained when the constitutive models (1)–(6) are alternatively used to represent the contribution to the overall stress coming from the ECM, in order to explore the pattern formation potential of these stress–strain constitutive equations (see Sect. 4.2).
4.1 Linear Stability Analysis
Biologically relevant homogeneous steady state. All nontrivial homogeneous steady states \(({\bar{n}},{\bar{\rho }},{\bar{u}})^\intercal \) of the system of PDEs (10), (11) and (16) subject to boundary conditions (17) have components \({\bar{n}}\equiv 1\) and \({\bar{u}}\equiv 0\), and we consider the arbitrary nontrivial steady state \({\bar{\rho }}\equiv \rho _0> 0\) amongst the infinite number of possible homogeneous steady states of the transport Eq. (11) for the normalised ECM density \(\rho \). Hence, we focus our attention on the biologically relevant homogeneous steady state \({\bar{\mathbf{{v}}}}=(1,{\rho _0},0)^\intercal \).
Linear stability analysis to spatially homogeneous perturbations. In order to undertake linear stability analysis of the steady state \({\bar{\mathbf{{v}}}}=(1,{\rho _0},0)^\intercal \) to spatially homogeneous perturbations, we make the ansatz \(\mathbf{{v}}(t,x) \equiv {\bar{\mathbf{{v}}}} + {\tilde{\mathbf{{v}}}}(t)\), where the vector \({\tilde{\mathbf{{v}}}} (t)= ({\tilde{n}}(t),{\tilde{\rho }}(t),{\tilde{u}}(t))^\intercal \) models small spatially homogeneous perturbations and linearise the system of PDEs (10), (11) and (16) about the steady state \({\bar{\mathbf{{v}}}}\). Assuming \({\tilde{n}}(t)\), \({\tilde{\rho }}(t)\) and \({\tilde{u}}(t)\) to be proportional to \(\exp {(\psi t)}\), with \(\psi \ne 0\), one can easily verify that \(\psi \) satisfies the algebraic equation \(\psi (\psi +r)(\psi ^2 a_2 +\psi a_1 +a_0)=0\). Since r is positive and the parameters \(a_0\), \(a_1\) and \(a_2\) are all nonnegative, the solution \(\psi \) of such an algebraic equation is necessarily negative and, therefore, the small perturbations \({\tilde{n}}(t)\), \({\tilde{\rho }}(t)\) and \({\tilde{u}}(t)\) will decay to zero as \(t \rightarrow \infty \). This implies that the steady state \({\bar{\mathbf{{v}}}}\) will be stable to spatially homogeneous perturbations for any choice of the parameter \(a_0\), \(a_1\), \(a_2\), \(b_0\), \(b_1\) and \(b_2\) in the stress–strain constitutive equation (14) (i.e. for all constitutive models (1)–(6)).
Linear stability analysis to spatially inhomogeneous perturbations. In order to undertake linear stability analysis of the steady state \({\bar{\mathbf{{v}}}}=(1,{\rho _0},0)^\intercal \) to spatially inhomogeneous perturbations, we make the ansatz \(\mathbf{{v}}(t,x) = {\bar{\mathbf{{v}}}} + {\tilde{\mathbf{{v}}}}(t,x)\), where the vector \({\tilde{\mathbf{{v}}}} (t,x)= ({\tilde{n}}(t,x),{\tilde{\rho }}(t,x),{\tilde{u}}(t,x))^\intercal \) models small spatially inhomogeneous perturbations and linearise the system of PDEs (10), (11) and (16) about the steady state \({\bar{\mathbf{{v}}}}\). Assuming \({\tilde{n}}(t,x)\), \({\tilde{\rho }}(t,x)\) and \({\tilde{u}}(t,x)\) to be proportional to \(\exp {(\psi t + i k x)}\), with \(\psi \ne 0\) and \(k \ne 0\), we find that \(\psi \) satisfies the following equation
with
and
where
Equation (18) has multiple solutions \((\psi (k^2))\) for each \(k^2\), and we denote by \(\mathrm{Re}(\cdot )\) the maximum real part of all these solutions. For cell patterns to emerge, we need the nontrivial homogeneous steady state \({\bar{\mathbf{{v}}}}\) to be unstable to spatially inhomogeneous perturbations, that is, we need \(\mathrm{Re}(\psi (k^2))>0\) for some \(k^2>0\). Notice that a necessary condition for this to happen is that at least one amongst \(c_0(k^2)\), \(c_1(k^2)\), \(c_2(k^2)\) and \(c_3(k^2)\) is negative for some \(k^2>0\). Hence, the fact that if \(\tau =0\), then \(c_0(k^2)\), \(c_1(k^2)\), \(c_2(k^2)\) and \(c_3(k^2)\) are all nonnegative for any value of \(k^2\) allows us to conclude that having \(\tau >0\) is a necessary condition for pattern formation to occur. This was expected based on the results presented in Murray (2001) and references therein.
In the case, where the model parameters are such that \(c_2(k^2) =0\) and \(c_3(k^2) = 0\), solving Eq. (18) for \(\psi \) gives the following dispersion relation
and for the condition \(\mathrm{Re}(\psi (k^2))>0\) to be met it suffices that, for some \(k^2>0\),
On the other hand, when the model parameters are such that only \(c_3(k^2) = 0\), from Eq. (18) we obtain the following dispersion relation
and for the condition \(\mathrm{Re}(\psi (k^2))>0\) to be satisfied it is sufficient that one of the following four sets of conditions holds
or
Finally, in the general case where the model parameters are such that \(c_3(k^2) \ne 0\) as well, from Eq. (18) we obtain the following dispersion relation
where \(p \equiv p(k^2)\), \(q \equiv q(k^2)\) and \(m \equiv m(k^2)\) are defined as
In this case, identifying sufficient conditions to ensure that the real part of \(\psi (k^2)\) is positive for some \(k^2>0\) requires lengthy algebraic calculations. We refer the interested reader to Gilmore et al. (2012), where the Routh–Hurwitz stability criterion was used to analyse this general case and obtain more explicit conditions on the model parameters under which pattern formation occurs.
4.2 Dispersion Relations
Substituting the definitions of \(a_0\), \(a_1\), \(a_2\), \(b_0\), \(b_1\) and \(b_2\) corresponding to the stress–strain constitutive equations (1)–(6), which are reported in Table 1, into definitions (19)–(22) for \(c_0(k^2)\), \(c_1(k^2)\), \(c_2(k^2)\) and \(c_3(k^2)\), and then using the dispersion relation given by formula (23), (24) or (25) depending on the values of \(c_2(k^2)\) and \(c_3(k^2)\) so obtained, we derive the dispersion relation for each of the constitutive models (1)–(6). In particular, we are interested in whether the real part of each dispersion relation is positive, so whenever multiple roots are calculated—for instance using (24)—the largest root is considered. In addition, dispersion relations throughout this section are plotted against the quantity \(k/\pi \), which directly correlates with perturbation modes and can therefore better highlight mode selection during the sensitivity analysis.
Basecase dispersion relations. Figure 2 displays the dispersion relations obtained for the stress–strain constitutive equations (1)–(6) under the following basecase parameter values
The parameter values given by (26) and (27) are chosen for illustrative purposes, in order to highlight the different qualitative behaviour of the dispersion relations obtained using different models and are comparable with nondimensional parameter values that can be found in the extant literature (see Appendix A for further details). A comparison between the plots in Fig. 2 reveals that fluidlike models, that is, the linear viscous model (2), the Maxwell model (4), and the Jeffrey model (6) (cf. Table 2), have a higher pattern formation potential than solidlike models, since under the same parameter set they exhibit a range—or, more precisely, they exhibit the same range—of unstable modes (i.e. \(\mathrm{Re}(\psi (k^2))>0\) for a range of values of \(k/\pi \)), while the others have no unstable modes.
We now undertake a sensitivity analysis with respect to the different model parameters and discuss key changes that occur in the basecase dispersion relations displayed in Fig. 2.
ECM elasticity. The plots in Fig. 3 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter E, and therefore also \(E_1\) and \(E_2\) (i.e. the parameters modelling ECM elasticity), are considered. These plots show that lower values of these parameters correlate with overall larger values of \(\mathrm{Re}(\psi (k^2))\) for all constitutive models, except for the linear viscous one, which corresponds to speeding up the formation of spatial patterns, when these may form. In addition, sufficiently small values of the parameters E, \(E_1\), and \(E_2\) allow the linear elastic model (1), the Kelvin–Voigt model (3), and the SLS model (5) to exhibit unstable modes. However, further lowering the values of these parameters appears to lead to singular dispersion relations (cf. the plots for the linear elastic model (1), the Maxwell model (4), and the SLS model (5) in Fig. 3), which suggests that linear stability theory may fail in the regime of low ECM elasticity.
ECM viscosity. The plots in Fig. 4 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter \(\eta \), and therefore also \(\eta _1\) and \(\eta _2\) (i.e. the parameters modelling ECM viscosity), are considered. These plots show that larger values of these parameters leave the range of modes for which \(\mathrm{Re}(\psi (k^2))>0\) unchanged but reduce the values of \(\mathrm{Re}(\psi (k^2))\). This supports the idea that a higher ECM viscosity may not change the pattern formation potential of the different constitutive models but may slow down the corresponding pattern formation processes.
Cell motility. The plots in Fig. 5 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter D (i.e. the parameter modelling cell motility) are considered. These plots show that larger values of this parameter may significantly shrink the range of modes for which \(\mathrm{Re}(\psi (k^2))>0\). In particular, with the exception of the linear elastic model, all constitutive models exhibit: infinitely many unstable modes when \(D \rightarrow 0\); a finite number of unstable modes for intermediate values of D; no unstable modes for sufficiently large values of D. This is to be expected due to the stabilising effect of undirected, random cell movement and indicates that higher cell motility may correspond to lower pattern formation potential.
Intrinsic growth rate of the cell density and elasticity of the surrounding tissue. The plots in Figs. 6 and 7 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter r (i.e. the intrinsic growth rate of the cell density) and the parameter s (i.e. the elasticity of the surrounding tissue) are, respectively, considered. These plots show that considering larger values of these parameters reduces the values of \(\mathrm{Re}(\psi (k^2))\) for all constitutive models, and in particular it shrinks the range of unstable modes for the linear viscous model (2), the Maxwell model (4), and the Jeffrey model (6), which can become stable for values of r or s sufficiently large. This supports the idea that higher growth rates of the cell density (i.e. faster cell proliferation and death), and higher substrate elasticity (i.e. stronger external tethering force) may slow down pattern formation processes and overall reduce the pattern formation potential for all constitutive models. Moreover, the plots in Fig. 7 indicate that higher values of s may in particular reduce the pattern formation potential of the different constitutive models by making it more likely that \(\mathrm{Re}(\psi (k^2))<0\) for smaller values of \({k/\pi }\) (i.e. lowfrequency perturbation modes will be more likely to vanish).
Level of contact inhibition of the cell traction forces and longrange cell traction forces. The plots in Figs. 8 and 9 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter \(\lambda \) (i.e. the level of cellcell contact inhibition of the cell traction forces) and the parameter \(\beta \) (i.e. the longrange cell traction forces) are, respectively, considered. Considerations similar to those previously made about the dispersion relations obtained for increasing values of the parameters r and s apply to the case where increasing values of the parameter \(\lambda \) and the parameter \(\beta \) are considered. In addition to these considerations, the plots in Figs. 8 and 9 indicate that for small enough values of \(\lambda \) or \(\beta \) the SLS model (5) can exhibit unstable modes, which further suggests that weaker contact inhibition of cell traction forces and lower longrange cell traction forces foster pattern formation. Moreover, the plots in Fig. 9 indicate that in the asymptotic regime \(\beta \rightarrow 0\) we may observe infinitely many unstable modes (i.e. \(\mathrm{Re}(\psi (k^2))>0\) for arbitrarily large wavenumbers), exiting the regime of physically meaningful pattern forming instabilities (Moreo et al. 2010; Perelson et al. 1986).
Cell haptotactic sensitivity and cell traction forces. The plots in Figs. 10 and 11 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter \(\alpha \) (i.e. the cell haptotactic sensitivity) and the parameter \(\tau \) (i.e. the cell traction force) are, respectively, considered. As expected (Murray 2001), larger values of these parameters overall increase the value of \(\mathrm{Re}(\psi (k^2))\) and broaden the range of values of modes for which \(\mathrm{Re}(\psi (k^2))>0\), so that for large enough values of these parameters the linear viscous model (2), the Kelvin–Voigt model (3) and the SLS model (5) can exhibit unstable modes. However, sufficiently large values of \(\tau \) appear to lead to singular dispersion relations (cf. the plots for the linear elastic model (1), the Maxwell model (4), and the SLS model (5) in Fig. 11), which suggests that linear stability theory may fail in the regime of high cell traction for certain constitutive models, as previously observed in (Byrne and Chaplain 1996).
Initial ECM density. The plots in Fig. 12 illustrate how the basecase dispersion relations displayed in Fig. 2 change when different values of the parameter \(\rho _0\) (i.e. the initial ECM density) are considered. Considerations similar to those previously made about the dispersion relations obtained for increasing values of the parameter \(\alpha \) apply to the case where increasing values of the parameter \(\rho _0\) are considered. In addition to these considerations, the plots in Fig. 12 indicate that smaller values of the parameter \(\rho _0\), specifically \(\rho _0<1\), correlate with a shift in mode selection towards lower modes (cf. the plots for the linear viscous model (2), the Maxwell model (4) and the Jeffrey model (6) in Fig. 12).
5 Numerical Simulations of a OneDimensional Mechanical Model of Pattern Formation
In this section, we verify key results of LSA presented in Sect. 4 by solving numerically the system of PDEs (10), (11) and (16) subject to boundary conditions (17). In particular, we report on numerical solutions obtained in the case where Eq. (16) is complemented with the Kelvin–Voigt model (3) or the Maxwell model (4). A detailed description of the numerical schemes employed is provided in the Supplementary Material (see file ‘SuppInfo’).
Setup of numerical simulations. We carry out numerical simulations using the parameter values given by (26) and (27). We choose the endpoints of the spatial domain to be \(\ell ={0}\) and \(L={1}\), and the final time T is chosen sufficiently large so that distinct spatial patterns can be observed at the end of simulations. We consider the initial conditions
where \(\epsilon (x)\) is a normally distributed random variable with mean 0 and variance 1 for every \(x \in [{0,1}]\). Initial conditions (28) model a scenario where random small perturbations are superimposed to the cell density corresponding to the homogeneous steady state of components \({\overline{n}}=1\), \({\overline{\rho }}={\rho _0}\) and \({\overline{u}}=0\). This is the steady state considered in the LSA undertaken in Sect. 4.1. Consistent initial conditions for \(\partial _{t}n(0,x)\), \(\partial _{t}\rho (0,x)\) and \(\partial _{t}u(0,x)\) are computed numerically —details provided in the Supplementary Material (see file ‘SuppInfo’). Numerical computations are performed in MATLAB.
Main results. The results obtained are summarised by the plots in Fig. 13, together with the corresponding videos provided as supplementary material. The supplementary video ‘MovS1’ displays the solution of the system of PDEs (10), (11) and (16) subject to the boundary conditions (17) and initial conditions (28) for the Kelvin–Voigt model and the Maxwell model from \(t=0\) until a steady state, displayed in Fig. 13, is reached. The supplementary videos ‘MovS2’, ‘MovS3’, and ‘MovS4’ display the solution of the same system of PDEs for the Maxwell model under alternative initial perturbations in the cell density, i.e. randomly distributed (‘MovS2’), periodic (’MovS3’) or randomly perturbed periodic (‘MovS4’) initial perturbations.
The results in Fig. 13 and the supplementary video ‘MovS1’ demonstrate that, in agreement with the dispersion relations displayed in Fig. 2, for the parameter values given by (26) and (27), small randomly distributed perturbations present in the initial cell density:

vanish in the case of the Kelvin–Voigt model, thus leading the cell density to relax to the homogeneous steady state \({\overline{n}}=1\) and attain numerical equilibrium at \(t={100}\) while leaving the ECM density unchanged;

grow in the case of the Maxwell model, resulting in the formation of spatial patterns both in the cell density n and in the ECM density \(\rho \), which attain numerical equilibrium at \(t=500\).
Notice that the formation of spatial patterns correlates with the growth of the cellECM displacement u. In fact, the displacement remains close to zero (i.e. \(\sim O(10^{{11}})\)) for the Kelvin–Voigt model, whereas it grows with time for the Maxwell model. In addition, the steady state obtained for the Maxwell model in Fig. 13, together with those obtained when considering alternative initial perturbations (see supplementary videos ‘MovS2’, ‘MovS3’, and ‘MovS4’), demonstrate that, in agreement with the dispersion relation displayed in Fig. 2 for the Maxwell model, for the parameter values given by (26) and (27), under small perturbations in the cell density, be they randomly distributed (cf. supplementary video ‘MovS2’), randomly perturbed periodic (cf. supplementary video ‘MovS3’) or periodic (cf. supplementary video ‘MovS4’), the fourth mode is the fastest growing one within the range of unstable modes (cf. \(\mathrm{Re}(\psi (k^2))>0\) for \(k/\pi \) between 2 and 6, with \(\max \big (\mathrm{Re}(\psi (k^2))\big )\approx 4\) in Fig. 2 for the Maxwell model). In addition, the cellular pattern observed at steady state exhibits 4 large and equally spaced peaks independently of the initial perturbation (cf. supplementary videos ‘MovS1’, ‘MovS2’, ‘MovS3’, and ‘MovS4’). Moreover, all the obtained cellular patterns at steady state exhibit the same structure—up to a horizontal shift—consisting of four large peaks, independently of the initial conditions that is used (cf. left panel in the bottom row of Fig. 13 and supplementary videos ‘MovS2’, ‘MovS3’, and ‘MovS4’). This indicates robustness and consistency in the nature of the saturated nonlinear steady state under specific viscoelasticity assumptions and parameter choices.
6 Numerical Simulations of a TwoDimensional Mechanical Model of Pattern Formation
In this section, we complement the results presented in the previous sections with the results of numerical simulations of a twodimensional mechanical model of pattern formation in biological tissues. In particular, we report on numerical solutions obtained in the case where the twodimensional analogue of the system of PDEs (10), (11) and (16) is complemented with a twodimensional version of the onedimensional Kelvin–Voigt model (3) or a twodimensional version of the onedimensional Maxwell model (4).
A twodimensional mechanical model of pattern formation. The mechanical model of pattern formation defined by the system of PDEs (10), (11) and (12) posed on a twodimensional spatial domain represented by a bounded set \(\Omega \subset {\mathbb {R}}^2\) with smooth boundary \(\partial \Omega \) reads as
with \(t \in (0,T]\), \(\varvec{x}=(x_1,x_2)^\intercal \in \Omega \) and \(\varvec{u}=(u_1,u_2)^\intercal \). We close the system of PDEs (29) imposing the twodimensional version of the periodic boundary conditions (17) on \(\partial \Omega \). Furthermore, we use the following twodimensional analogues of definitions (13) and (15)
where \(\varvec{I}\) is the identity tensor. Moreover, in analogy with the onedimensional case, we define the stress tensor \(\varvec{\sigma }_m\) via the twodimensional constitutive model that is used to represent the stress–strain relation of the ECM. In particular, we consider the following generic twodimensional constitutive equation
This constitutive equation, together with the associated parameter choices reported in Table 3, summarises the twodimensional version of the onedimensional Kelvin–Voigt model (3) and the twodimensional version of the onedimensional Maxwell model (4) that are considered, which are derived in Appendix B.
Here, the strain \(\varvec{\varepsilon }(t,\varvec{x})\) and the dilation \(\theta (t,\varvec{x})\) are defined in terms of the displacement \(\varvec{u}(t,\varvec{x})\) as
Notice that both \(\varvec{\varepsilon }\) and \(\theta \) reduce to \(\varepsilon =\partial _{x}u\) in the onedimensional case. Amongst the parameters in the stress–strain constitutive equation (31) reported in Table 3 for the twodimensional Kelvin–Voigt and Maxwell models, \(\eta \) is the shear viscosity,
where \(\nu \) is Poisson’s ratio and E is Young’s modulus. As clarified in Appendix B, the twodimensional Maxwell model in the form (31) holds under the simplifying assumption that the quotient between the bulk viscosity and the shear viscosity of the ECM is equal to \(\nu '\).
Setup of numerical simulations. We solve numerically the system of PDEs (29) subject to the twodimensional version of the periodic boundary conditions (17) and complemented with (30)(33). Numerical simulations are carried out using the following parameter values
which are chosen for illustrative purposes and are comparable with nondimensional parameter values that can be found in the extant literature (see Appendix A for further details). We choose \(\Omega = [0,1] \times [0,1]\) and the final time T is chosen sufficiently large so that distinct spatial patterns can be observed at the end of simulations. We consider first the following twodimensional analogue of initial conditions (28)
where \(\epsilon (x_1,x_2)\) is a normally distributed random variable with mean 0 and variance 1 for each \((x_1,x_2) \in [0,1] \times [0,1]\). Consistent initial conditions for \(\partial _{t}n(0,x_1,x_2)\), \(\partial _{t}\rho (0,x_1,x_2)\) and \(\partial _{t}\varvec{u}(0,x_1,x_2)\) are computed numerically, as similarly done in the onedimensional case, and numerical computations are performed in MATLAB with a numerical scheme analogous to that employed in the onedimensional case— details provided in the Supplementary Material (see file ‘SuppInfo’).
Main results. The results obtained are summarised by the plots in Figures 14 and 15, together with the corresponding videos provided as supplementary material. Solutions of the system of PDEs (29), together with (30)(33), subject to initial conditions (36) and periodic boundary conditions, for the parameter values given by (34) and (35), are calculated both for the Kelvin–Voigt model (see supplementary video ‘MovS5’) and the Maxwell model (see supplementary video ‘MovS6’) according to the parameter changes summarised in Table 3. The randomly generated initial perturbation in the cell density, together with the cell density at \(t=200\) both for the Kelvin–Voigt and the Maxwell model are displayed in Fig. 14, while the solution to the Maxwell model is plotted at a later time in Fig. 15. Overall, these results demonstrate that, in the scenarios considered here, which are analogous to those considered for the corresponding onedimensional models, small randomly distributed perturbations present in the initial cell density (cf. first panel in Fig. 14):

vanish in the case of the Kelvin–Voigt model, thus leading the cell density to relax to the homogeneous steady state \({\overline{n}}=1\) and attain numerical equilibrium at \(t=260\) (cf. second panel of Fig. 14) while leaving the ECM density unchanged (see supplementary video ‘MovS5’);

grow in the case of the Maxwell model, leading to the formation of spatiotemporal patterns both in the cell density n and in the ECM density \(\rho \) (cf. third panel of Figure 14, Fig. 15 and supplementary video ‘MovS6’), capturing spatiotemporal dynamic heterogeneity arising in the system.
Similarly to the onedimensional case, the formation of spatial patterns correlates with the growth of the cellECM displacement \({\varvec{u}}\). In fact, the displacement remains close to zero (i.e. \(\sim O(10^{{11}})\)) for the Kelvin–Voigt model (see supplementary video ‘MovS5’), whereas it grows with time for the Maxwell model (see Figure 15 and supplementary video ‘MovS6’).
7 Conclusions and Research Perspectives
Conclusions. We have investigated the pattern formation potential of different stress–strain constitutive equations for the ECM within a onedimensional mechanical model of pattern formation in biological tissues formulated as the system of implicit PDEs (10), (11), and (16).
The results of linear stability analysis undertaken in Sect. 4 and the dispersion relations derived therefrom support the idea that fluidlike stress–strain constitutive equations (i.e. the linear viscous model (2), the Maxwell model (4) and the Jeffrey model (6)) have a pattern formation potential much higher than solidlike constitutive equations (i.e. the linear elastic model (1), the Kelvin–Voigt model (3) and the SLS model (5)). This is confirmed by the results of numerical simulations presented in Sect. 5, which demonstrate that, all else being equal, spatial patterns emerge in the case where the Maxwell model (4) is used to represent the stress–strain relation of the ECM, while no patterns are observed when the Kelvin–Voigt model (3) is employed. In addition, the structure of the spatial patterns presented in Sect. 5 for the Maxwell model (4) is consistent with the fastest growing mode predicted by linear stability analysis. In Sect. 6, as an illustrative example, we have also reported on the results of numerical simulations of a twodimensional version of the model, which is given by the system of PDEs (29) complemented with the twodimensional Kelvin–Voigt and Maxwell models (31). These results demonstrate that key features of spatial pattern formation observed in one spatial dimension carry through when two spatial dimensions are considered, thus conferring additional robustness to the conclusions of our work.
Our findings corroborate the conclusions of Byrne and Chaplain (1996), suggesting that prior studies on mechanochemical models of pattern formation relying on the Kelvin–Voigt model of viscoelasticity may have underestimated the pattern formation potential of biological tissues and advocating the need for further empirical work to acquire detailed quantitative information on the mechanical properties of single components of the ECM in different biological tissues, in order to furnish such models with stress–strain constitutive equations for the ECM that provide a more faithful representation of tissue rheology, cf.Fung (1993).
Research perspectives. The dispersion relations given in Sect. 4 indicate that there may be parameter regimes whereby solidlike constitutive models of linear viscoelasticity give rise to dispersion relations which exhibit a range of unstable modes, while the dispersion relations obtained using fluidlike constitutive models exhibit singularities, exiting the regime of validity of linear stability analysis. In this regard, it would be interesting to consider extended versions of the mechanical model of pattern formation defined by the system of PDEs (10), (11) and (16), in order to reenter the regime of validity of linear stability analysis for the same parameter regimes and verify that in such regimes all constitutive models can produce patterns. For instance, it is known that including longrange effects, such as longrange diffusion or longrange haptotaxis, can promote the formation of stable spatial patterns (Moreo et al. 2010; Oster et al. 1983), which could be explored through nonlinear stability analysis, as previously done for the case in which the stress–strain relation of the ECM is represented by the Kelvin–Voigt model (Cruywagen and Murray 1992; Lewis and Murray 1991; Maini and Murray 1988). In particular, weakly nonlinear analysis could provide information on the existence and stability of saturated nonlinear steady states, supercritical bifurcations or subcritical bifurcations, which may exist even when the homogeneous steady states are stable to small perturbations according to linear stability analysis (Cross and Greenside 2009). Nonlinear analysis would further enable exploring the existence of possible differences in the spatial patterns obtained when different stress–strain constitutive equations for the ECM are used—such as amplitude of patterns, perturbation mode selection, and geometric structure in two spatial dimensions. In particular, the basecase dispersion relations given in Sect. 4 for different fluidlike models of viscoelasticity displayed the same range of unstable modes. This suggests that the investigation of similarities and differences in mode selection between the various models of viscoelasticity could yield interesting results. It would also be interesting to construct numerical solutions for the mechanical model defined by the system of PDEs (10), (11) and (16) complemented with the Jeffrey model (6). For this to be done, suitable extensions of the numerical schemes presented in the Supplementary Material (see file ‘SuppInfo’) need to be developed.
It would also be relevant to systematically assess the pattern formation potential of different constitutive models of viscoelasticity in two spatial dimensions. This would require to relax the simplifying assumption (A.4) on the shear and bulk viscosities of the ECM, which we have used to derive the twodimensional Maxwell model in the form of (31), and, more in general, to find analytically and computationally tractable stress–straindilation relations, which still remains an open problem (Birman et al. 2002; HaghighiYazdi and LeeSullivan 2011). In order to solve this problem, new methods of derivation and parameterisation for constitutive models of viscoelasticity might need to be developed (Valtorta and Mazza 2005).
As previously mentioned, the values of the model parameters used in this paper have been chosen for illustrative purposes only. Hence, it would be useful to recompute the dispersion relations and the numerical solutions presented here for a calibrated version of the model based on real biological data. On a related note, there exists a variety of interesting applications that could be explored by varying parameter values in the generic constitutive equation (16) both in space and time. For instance, cell monolayers appear to exhibit solidlike behaviours on small time scales, whereas they exhibit fluidlike behaviours on longer time scales (Tlili et al. 2018), and spatiotemporal changes in basement membrane components are known to affect structural properties of tissues during development or ageing, as well as in a number of genetic and autoimmune diseases (Khalilgharibi and Mao 2021). Amongst these, remarkable examples are Alport’s syndrome, characterised by changes in collagen IV network due to genetic mutations associated with the disease, diabetes mellitus, whereby high levels of glucose induce significant basement membrane turnover, and cancer. In particular, cancerassociated fibrosis is a disease characterised by an excessive production of collagen, elastin, and proteoglycans, which directly affects the structure of the ECM resulting in alterations of viscoelastic tissue properties (Ebihara et al. 2000). Such alterations in the ECM may facilitate tumour invasion and angiogenesis. Considering a calibrated mechanical model of pattern formation in biological tissues, whereby the values of the parameters in the stress–strain constitutive equation for the ECM change during fibrosis progression, may shed new light on the existing connections between structural changes in the ECM components and higher levels of malignancy in cancer (Chandler et al. 2019; Park et al. 2001).
Change history
14 October 2021
The ESM files format has been corrected
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Acknowledgements
The authors wish to thank the two anonymous Reviewers for their thoughtful and constructive feedback on the manuscript. MAJC gratefully acknowledges the support of EPSRC Grant No. EP/S030875/1 (EPSRC \(\hbox {SofTMech}^{\wedge }\)MP CentretoCentre Award).
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Appendices
A Choice of the Parameter Values for the Baseline Parameter Sets (26)–(27) and (34)–(35)
In order not to limit the conclusions of our work by selecting a specific biological scenario, we identified possible ranges of values for each parameter of our model on the basis of the existing literature on mechanochemical models of pattern formation and then define our baseline parameter set by selecting values in the middle of such ranges. In the sensitivity analysis presented in Section 4.2, we then consider the effect of varying the parameter values within an appropriate range. We first consider the parameters appearing in equations (10), (11) and (16), as well as in the initial conditions (28) and then consider additional parameters appearing in the twodimensional system (29)–(33), and the associated initial conditions (36).
Parameters in the balance equation (10) Nondimensional parameter values for the cell motility coefficient D in the literature appear as low as \(D=10^{8}\) (Gilmore et al. 2012), and as high as \(D=10\) (Murray and Oster 1984b), but are generally taken in the range \([10^{5},1]\) (Bentil and Murray 1991; Byrne and Preziosi 2003; Cruywagen and Murray 1992; Ferrenq et al. 1997; Maini et al. 2002; Murray et al. 1988; Namy et al. 2004; Olsen et al. 1995; Perelson et al. 1986). Hence, we take \(D=0.01\) for our baseline parameter set. The nondimensional haptotactic sensitivity of cells \(\alpha \) takes values in the range \([10^{5},5]\) (Bentil and Murray 1991; Cruywagen and Murray 1992; Gilmore et al. 2012; Murray et al. 1988; Namy et al. 2004; Olsen et al. 1995; Perelson et al. 1986), and we take \(\alpha =0.05\) for our baseline parameter set. While most authors ignore cell proliferation dynamics, i.e. consider \(r=0\) (Ambrosi et al. 2005; Byrne and Preziosi 2003; Gilmore et al. 2012; Murray et al. 1988; Perelson et al. 1986), when present, the rate of cell proliferation takes nondimensional value in the range [0.02, 5] (Cruywagen and Murray 1992; Olsen et al. 1995; Perelson et al. 1986). Hence, we choose \(r=1\) for our baseline parameter set.
Parameters in the balance equation (11) While no parameters appear in the balance equation (11), the value of the parameter \(\rho _0\) introduced in Sect. 4 as the spatially homogenous steady state \({\bar{\rho }}=\rho _0\), and successively specified to be the initial ECM density in (28) for our numerical simulations, stems from neglected terms in Eq. (11). With the exception of Cruywagen and Murray (1992) and Maini et al. (2002) who, respectively, have \(\rho _0=100.2\) and \(\rho _0=0.1\), this parameter is usually taken to be \(\rho _0=1\) in mechanochemical models ignoring additional ECM dynamics (Bentil and Murray 1991; Cruywagen and Murray 1992; Harris et al. 1981; Manoussaki 2003; Moreo et al. 2010; Murray and Oster 1984a, b; Olsen et al. 1995; Oster et al. 1983; Perelson et al. 1986).This is generally justified by assuming the steady state \(\rho _0\) of equation (11) that is introduced by the additional term, say \(S(n,\rho )\), is itself used to nondimensionalise \(\rho \), before assuming the dynamics modelled by \(S(n,\rho )\) to occur on a much slower timescale than convection driven by the cellECM displacement, thus neglecting this term (Murray 2001, p.328), resulting in the nondimensional parameter \({\hat{\rho }}_0 = 1\). Hence, we take \(\rho _0=1\).
Parameters in the force balance Eq. (16) The elastic modulus, or Young modulus, E is usually itself used to nondimensionalise the other parameters in the dimensional correspondent of equation (16) and, therefore, does not appear in the nondimensional system (Bentil and Murray 1991; Gilmore et al. 2012; Murray and Oster 1984b, b; Murray et al. 1988; Olsen et al. 1995; Perelson et al. 1986). This corresponds to the nondimensional value \(E=1\), which is what we take for our baseline parameter set. The viscosity coefficient \(\eta \) has been taken with nondimensional values in low orders of magnitude, such as \(\eta \sim 10^{3}10^{1}\) (Bentil and Murray 1991; Cruywagen and Murray 1992; Gilmore et al. 2012; Perelson et al. 1986), as well as in high orders of magnitude, such as \(\eta \sim 10^210^3\) (Gilmore et al. 2012; Olsen et al. 1995). It is, however, generally taken to be \(\eta =1\) (Bentil and Murray 1991; Byrne and Chaplain 1996; Cruywagen and Murray 1992; Murray and Oster 1984b; Murray et al. 1988; Perelson et al. 1986), which is what we choose for our baseline parameter set. When the constitutive model includes two elastic moduli, i.e. for the SLS model (5), or two viscosity coefficients, i.e. for the Jeffrey model (6), we take \(E_1=E_2=E/2 = 0.5\) and \(\eta _1=\eta _2=\eta /2 = 0.5\) as done by Alonso et al. (2017). The cell traction parameter \(\tau \) takes nondimensional values spanning many orders of magnitude: it can be found as low as \(\tau =10^{5}\) (Ferrenq et al. 1997) and as high as \(\tau = 10\) (Bentil and Murray 1991; Cruywagen and Murray 1992; Perelson et al. 1986), but it is generally taken to be of order \(\tau \sim 1\) (Bentil and Murray 1991; Byrne and Chaplain 1996; Gilmore et al. 2012; Murray et al. 1988; Perelson et al. 1986) and many works consider \(\tau \sim 10^{2}10^{1}\) (Byrne and Chaplain 1996; Ferrenq et al. 1997; Murray and Oster 1984b; Olsen et al. 1995). Hence, for our baseline parameter set we choose \(\tau =0.2\). The cell–cell contact inhibition parameter \(\lambda \) generally takes nondimensional values in the range \( [10^{2},1]\) (Bentil and Murray 1991; Byrne and Chaplain 1996; Murray et al. 1988; Perelson et al. 1986), so we choose \(\lambda =0.5\) for our baseline parameter set. The longrange cell traction parameter \(\beta \), when present, takes nondimensional values in the range \([10^{3},10^{2}]\) (Bentil and Murray 1991; Cruywagen and Murray 1992; Gilmore et al. 2012; Moreo et al. 2010; Murray et al. 1988; Perelson et al. 1986) so we choose \(\beta =0.005\) for our baseline parameter set. The elasticity of the external elastic substratum s, which is sometimes ignored or substituted with a viscous drag, has been taken to have nondimensional values as low as \(s \in [10^{1},1]\) (Byrne and Chaplain 1996; Murray and Oster 1984b; Olsen et al. 1995) but is generally chosen in the range [10, 400] (Bentil and Murray 1991; Gilmore et al. 2012; Murray et al. 1988; Perelson et al. 1986). Hence, we take \(s=10\) for our baseline parameter set.
Parameters in the 2D system (29)–(33) For the parameters in the 2D system (29)–(33) and initial condition (36) that also appear in the equations (10), (11), (16) and initial conditions (28), we make use of the same nondimensional values selected in the onedimensional case (see previous paragraphs). The Poisson ratio \(\nu \), which can only take values in the range [0.1, 9.45], has been estimated to be in the range [0.2, 0.3] for the biological tissue considered in mechanochemical models in the current literature (Ambrosi et al. 2005; Cruywagen and Murray 1992; Manoussaki 2003; Moreo et al. 2010). Hence, we choose \(\nu =0.25\) for our baseline parameter set. This results in \(E'=E/(1+\nu )=0.8\) and \(\nu '=\nu /(12\nu )=0.5\) according to definitions (33). In addition, under the simplifying assumption (A.4) introduced in Appendix B, the bulk viscosity takes the value \(\mu =\nu '\eta =0.5\eta =0.5\), which is in agreement with the fact that the bulk and shear viscosities are usually assumed to take values of a similar order of magnitude in the extant literature (Ambrosi et al. 2005; Manoussaki 2003; Moreo et al. 2010; Murray 2003).
B Derivation of the TwoDimensional Kelvin–Voigt and Maxwell Models (31)
Landau & Lifshitz derived from first principles the stress–strain relations that give the twodimensional versions of the linear elastic model (1) and of the linear viscous model (2) in isotropic materials (Landau and Lifshitz 1970), which read, respectively, as
Here, E is Young’s modulus, \(\nu \) is Poisson’s ratio, \(\varvec{I}\) is the identity tensor, \(\eta \) is the shear viscosity and \(\mu \) is the bulk viscosity. Moreover, \(\varvec{\varepsilon }_e\) and \(\theta _e\) are the strain and dilation under a purely elastic deformation \(\varvec{u}_e\) while \(\varvec{\varepsilon }_v\) and \(\theta _v\) are the strain and dilation under a purely viscous deformation \(\varvec{u}_v\), which are all defined via (32).
In the case of a linearly viscoelastic material satisfying Kelvin–Voigt model, the twodimensional analogue of (3) is simply given by
Here, \(E'\) and \(\nu '\) are defined via (33) and there is no distinction between the strain or dilation associated with each component (i.e. \(\varvec{\varepsilon }=\varvec{\varepsilon }_e=\varvec{\varepsilon }_v\) and \(\theta =\theta _e=\theta _v\)), as the viscous and elastic components are connected in parallel. This is the stress–strain constitutive equation that is typically used to describe the contribution to the stress of the cellECM system coming from the ECM in twodimensional mechanochemical models of pattern formation (Cruywagen and Murray 1992; Ferrenq et al. 1997; Javierre et al. 2009; Maini and Murray 1988; Manoussaki 2003; Murray 2001; Murray et al. 1988; Murray and Oster 1984a, b; Murray et al. 1983; Olsen et al. 1995; Oster et al. 1983; Perelson et al. 1986).
On the other hand, deriving the twodimensional analogues of Maxwell model (4), of the SLS model (5) and of the Jeffrey model (6) is more complicated due to the presence of elements connected in series. In the case of Maxwell model, using the fact that the overall strain and dilation will be distributed over the different components (i.e. \(\varvec{\varepsilon }=\varvec{\varepsilon }_e+\varvec{\varepsilon }_v\) and \(\theta =\theta _e+\theta _v\)) along with the fact that the stress on each component will be the same as the overall stress (i.e. \(\varvec{\sigma }=\varvec{\sigma }_e=\varvec{\sigma }_v\)), one finds
with \(E'\) and \(\nu '\) being defined via (33). Under the simplifying assumption that
the stress–strain constitutive equation (A.3) can be rewritten in the form given by the generic twodimensional constitutive equation (31) under the parameter choices reported in Table 3. Dividing (A.2) by \(\eta \), under the simplifying assumption (A.4), the stress–strain constitutive equation for the Kelvin–Voigt model (A.2) can be rewritten as
which is in the form given by the generic twodimensional constitutive equation (31) under the parameter choices reported in Table 3.
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Villa, C., Chaplain, M.A.J., Gerisch, A. et al. Mechanical Models of Pattern and Form in Biological Tissues: The Role of Stress–Strain Constitutive Equations. Bull Math Biol 83, 80 (2021). https://doi.org/10.1007/s11538021009125
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DOI: https://doi.org/10.1007/s11538021009125
Keywords
 Pattern formation
 Mechanical models
 Murray–Oster theory
 Biological tissues
 Stress–strain constitutive equations
 Linear viscoelasticity