Abstract
Piperazine (pip) were reacted with benzoic acid (Hba) and different substituted benzoic acid, such as o-chlorobenzoic acid (Hocba), m-chlorobenzoic acid (Hmcba), p-chlorobenzoic acid (Hpcba), o-aminobenzoic acid (Hoaba), p-aminobenzoic acid (Hpaba), affording a series of compounds [H2pip][ba]2 (1), [H2pip][ocba]2 (2), [H2pip][mcba]2 (3), [H2pip][pcba]2 (4), [H2pip][oaba]2 (5), and [H2pip][paba]2 (6). Extensive N–H···O hydrogen bonds are found in 1–6, featuring different hydrogen-bonding motifs. Compounds 1–4 have two-dimensional layers stabilized by strong N–H···O hydrogen bonds, while compounds 5 and 6 exhibit one-dimensional ribbons formed by N–H···O hydrogen bonds. Moreover, in compound 6, the existence of water molecules extends the one-dimensional ribbons into a three-dimensional supramolecular structure via hydrogen bonds. CCDC: 672374, (1); 672375, (2); 672376, (3); 672377, (4); 672378, (5); 672379, (6).
Graphical Abstract
The molecular self-assembly of piperazine (pip) with benzoic acid (Hba), o-chlorobenzoic acid (Hocba), m-chlorobenzoic acid (Hmcba), p-chlorobenzoic acid (Hpcba), o-aminobenzoic acid (Hoaba), and p-aminobenzoic acid (Hpaba) results in six new supramolecular networks 1-6, respectively.
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Introduction
Organic crystals built from acid–base complexes have received considerable attention in the predictable assembly of supramolecular architectures [1–4]. One of the important ways is the utilization of self-assembly of small molecules through N–H···O and N–H···N hydrogen bonding interactions and other weak intermolecular interactions to construct one-, two- and three-dimensional networks [5–8]. As an excellent hydrogen bond donor, piperazine (pip) has been employed widely in constructing supramolecular architectures, mainly in combination with aliphatic chain carboxylic acids [9–14]. In contrast, only a few examples of crystals of aromatic acids with pip have been reported [14–24], including five examples of crystals of benzoic acids and pip have been reported so far [25–28]. Different from the benzoic acids complexes, the substituted benzoic acids with functional groups can construct different supramolecular architectures with pip. In our previous work, we have reported several molecular supromolecular networks constructed by pip with dicarboxylic acids [29]. Different from the dicarboxylic acids, benzoic acids and its substituents can construct different networks with pip. Herein, we report crystal structures of pip and with benzoic acid (Hba) and different substituted benzoic acid, such as o-chlorobenzoic acid (Hocba), m-chlorobenzoic acid (Hmcba), p-chlorobenzoic (Hpcba), o-aminobenzoic acid (Hoaba), p-aminobenzoic acid (Hpaba) (Chart 1), namely, [H2pip][ba]2 (1), [H2pip][ocba]2 (2), [H2pip][mcba]2 (3), [H2pip][pcba]2 (4), [H2pip][oaba]2 (5), and [H2pip][paba]2 (6).
Experimental Section
Materials and Physical Measurements
All reagents and solvents used were commercially available and used as received without further purification. The C, H and N microanalyses were carried out with an Elementar Vario EL elemental analyzer.
Synthesis
(1): An ethanol solution (10 mL) of Hba (0.244 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture was stirred for 5 min. The resulting colorless solution was allowed to stand in air at room temperature for 5 days yielding colorless crystals in ca. 60% yield (Found: C, 65.48; H, 6.67; N, 8.52%. Calc. for C18H22N2O4: C, 65.44; H, 6.71; N, 8.48%).
(2): An ethanol solution (10 mL) of Hocba (0.312 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture was stirred for 5 min. The resulting colorless solution was allowed to stand in air at room temperature for 3 days yielding colorless crystals in ca. 60% yield (Found: C, 54.20; H, 5.09; N, 7.10%. Calc. for C18H20N2O4Cl2: C, 54.15; H, 5.05; N, 7.02%)
(3): An ethanol solution (10 mL) of Hmcba (0.312 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture was stirred for 5 min. The resulting colorless solution was allowed to stand in air at room temperature for 4 days yielding colorless crystals in ca. 64% yield (Found: C, 54.19; H, 5.01; N, 7.10%. Calc. for C18H20N2O4Cl2: C, 54.15; H, 5.05; N, 7.02%).
(4): An ethanol solution (10 mL) of Hpcba (0.312 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture was stirred for 5 min. The resulting colorless solution was allowed to stand in air at room temperature for 4 days, yielding colorless crystals in ca. 59% yield (Found: C, 54.14; H, 5.05; N, 7.05%. Calc. for C18H20N2O4Cl2: C, 54.15; H, 5.05; N, 7.02%).
(5): An ethanol solution (10 mL) of Hoaba (0.274 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture was stirred for 5 min. The resulting thin-red solution was allowed to stand in the dark at room temperature for 3 days, yielding colorless crystals in ca. 63% yield (Found: C, 59.95; H, 6.74; N, 15.58%. Calc. for C18H24N4O4: C, 59.99; H, 6.71; N, 15.55%).
(6): An ethanol solution (10 mL) of Hpaba (0.274 g, 2.0 mmol) was added to a stirred solution (5 mL) of pip (0.086 g, 1.0 mmol) and the reaction mixture stirred for 5 min. The resulting yellowish solution was allowed to stand in the dark at room temperature for 1 week, yielding yellowish crystals in ca. 67% yield (Found: C, 54.55; H, 7.10; N, 14.18%. Calc. for C18H28N4O6: C, 54.53; H, 7.12; N, 14.13%).
X-Ray Crystallography
The diffraction data for 1–6 were collected at 273 K on a Bruker Smart 1000 CCD diffractometer with Mo–Kα radiation (λ = 0.71073 Å), and the data reduction was performed using Bruker SAINT [30]. The structures were solved using direct method, which yielded the positions of all or most of the non-hydrogen atoms. These were refined first isotropically and then anisotropically. All the hydrogen atoms of the ligands were placed in calculated positions with fixed isotropic thermal parameters and included in structure factor calculations in the final stage of full-matrix least-squares refinement. All calculations were performed using the SHELXTL programs [31]. The crystallographic data for 1–6 are summarized in Table 1. Hydrogen bond parameters are listed in Table 2.
Crystallographic data for the structures have been deposited with the Cambridge Crystallographic Data Centre, CCDC-672374 (1), -672375 (2), -672376 (3), -672377 (4), -672378 (5), -672379 (6). Copies of the data can be obtained free of charge on application to The Director, CCDC, 12 Union Road, Cambridge CB2 1EZ, UK (Fax: int.code_(1223)336-033; e-mail for inquiry: fileserv@ccdc.cam.ac.uk; e-mail for deposition: deposit@ccdc.cam.ac.uk).
Results and Discussion
Single-crystal X-ray diffraction study reveals that 1 is a hydrogen-bonded two-dimensional supramolecular network The asymmetric unit contains a half of the diprotonated [H2pip]2+ and a deprotonated ba− anoin. Each diprotonated piperazine cation [H2pip]2+ connects four ba− anions through the N–H···O hydrogen bonds, while each ba− anion is connected to two [H2pip]2+ cations via the carboxylate group (Fig. 1a, b). Among the N–H···O hydrogen bonds, those associated with the carboxylic groups in the syn mode are strong (N1···O1 = 2.595(2) Å), whereas those associated with the carboxylic groups in the anti mode are moderate (N1···O2 = 2.731 Å). Consequently, a two-dimensional supramolecular layer is thus generated by N–H···O hydrogen-bonds (Fig. 1c).
When one of the H atoms of the benzene ring was replaced by the Cl atoms on different position, crystals of compounds 2, 3 and 4 are obtained. In the crystal structure of 2, each [H2pip]2+ cation is hydrogen-bonded to four ocba− anions (Fig. 2a), resulting a N–H···O hydrogen-bonded two-dimensional layer, in which the N–H···O hydrogen bond associated with carboxylic group in the syn mode (2.657 Å) only slightly shorter than that associated with the carboxylic group in the anti mode (2.713 Å). Differently, there are existing intramolecular Cl···O contacts between the Cl atom and carboxylic O atom (3.069(2) Å) (Fig. 2b), and intermolecular Cl···O contacts (3.179(2) Å) to form two ocba− anions dimer (Fig. 2c), both of which are less than their respective van der Walls radius sums (3.27 Å) [32–35]. Notably, the structures of compound 3 and 4 with Cl atom on the m- and p- position, respectively, are similar to compound 1, though crystallizing in different space groups, indicating that the Cl atom on the m- and p- position with long distance from carboxylate group has no effect on the molecular packing.
When the Cl atom was replaced by amino group, a one-dimensional chain-based structure was formed in compound 5. There are two halves of centrosymmetric [H2pip]2+ cations and two oaba− anions in a crystallographically independent unit, in which each [H2pip]2+ cation is located around an inverse center. Each diprotonated piperazine cation [H2pip]2+ connects four oaba− anions through the N–H···O hydrogen bonds, while each oaba− anioin is connected to two [H2pip]2+ cations via the carboxylate group in the syn-anti mode (O···N = 2.647–2.716 Å) (Fig. 3a, b), and then a one-dimensional ribbon is formed, in which the [H2pip]2+ cations are located in the center while the oaba− anions are attached on its both sides (Fig. 3c).
Different from compound 5, there are one half [H2pip]2+ cation, one paba− anion and one lattice water molecule in the asymmetric unit. Similarly, each [H2pip]2+ cation links four paba− anions through strong N–H···O hydrogen bonding interactions (N···O 2.630 and 2.703 Å), while each paba− anion links two neighboring [H2pip]2+ cations, as well as four water molecules (Fig. 4a, b). The existence of lattice water molecules make rich hydrogen bonds among the three parts. Firstly, the water molecule acts as hydrogen donors to form hydrogen bonds with adjacent carboxylic oxygen atoms from paba− anions (O···O = 2.830(5) and 2.811(5) Å). Secondly, it also acts as a hydrogen acceptor to form a hydrogen bond with an adjacent amino group from paba− anion (N···O = 2.943(5) Å). Through these two kinds of hydrogen bonding interactions, the one-dimensional [H2pip]2+–[paba]− ribbons (Fig. 4c) are assembled into a three-dimensional supramolecular network.
Conclusion
The flexible and easily protonated pip molecule is be chosen as the hydrogen donor and different substituted benzoic acids as the hydrogen acceptor to construct six different compounds 1–6. For different substituents of the benzoic group, similar two-dimensional hydrogen-bonded networks are formed in 1–4, indicating that the introduction of chlorine has no obvious effect on the hydrogen-bonded network, including the intramolecular and intermolecular Cl···O contacts. However, when a amino group is introduced, one-dimensional supramolecular ribbons are generated in 5–6, suggesting a significant effect of the amino group on the hydrogen-bonding behavior between of the [H2pip]2+ cations and substituted benzoic groups. As is expected, the amino group of the benzoic acids and lattice water molecules also play a vital role in formation of network.
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Acknowledgment
We thank Prof. Chen Xiaoming at Sun Yat-Sen University for his help in X-ray structural analysis.
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Open Access This is an open access article distributed under the terms of the Creative Commons Attribution Noncommercial License (https://creativecommons.org/licenses/by-nc/2.0), which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
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Chen, Zy., Peng, Mx. Supramolecular Architectures Constructed from Piperazine and Substituted Benzoic Acids. J Chem Crystallogr 41, 137–142 (2011). https://doi.org/10.1007/s10870-010-9852-1
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DOI: https://doi.org/10.1007/s10870-010-9852-1