Skip to main content

Microbial community composition and trophic role along a marked salinity gradient in Laguna Puilar, Salar de Atacama, Chile


The geological, hydrological and microbiological features of the Salar de Atacama, the most extensive evaporitic sedimentary basin in the Atacama Desert of northern Chile, have been extensively studied. In contrast, relatively little attention has been paid to the composition and roles of microbial communities in hypersaline lakes which are a unique feature in the Salar. In the present study biochemical, chemical and molecular biological tools were used to determine the composition and roles of microbial communities in water, microbial mats and sediments along a marked salinity gradient in Laguna Puilar which is located in the “Los Flamencos” National Reserve. The bacterial communities at the sampling sites were dominated by members of the phyla Bacteroidetes, Chloroflexi, Cyanobacteria and Proteobacteria. Stable isotope and fatty acid analyses revealed marked variability in the composition of microbial mats at different sampling sites both horizontally (at different sites) and vertically (in the different layers). The Laguna Puilar was shown to be a microbially dominated ecosystem in which more than 60% of the fatty acids at particular sites are of bacterial origin. Our pioneering studies also suggest that the energy budgets of avian consumers (three flamingo species) and dominant invertebrates (amphipods and gastropods) use minerals as a source of energy and nutrients. Overall, the results of this study support the view that the Salar de Atacama is a heterogeneous and fragile ecosystem where small changes in environmental conditions may alter the balance of microbial communities with possible consequences at different trophic levels.

This is a preview of subscription content, access via your institution.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7


Download references


We would like to acknowledge collaborative Grant BMBF-CONICYT N° PCCI1-2043 (BMBF FKZ 01DN13015) and Fondecyt 1140179. Also we deeply acknowledge CONAF and Mr. Nelson Amado for sampling support in Laguna Puilar. We are grateful of Vilma Barrera and Irma Vila for chemical analyses and to Katja Preuss and Daniel Schäfer for help with the fatty acid analyses. Chris Harrod is supported by Nucleo Milenio INVASAL funded by Chile’s government program, Iniciativa Cientifica Milenio from Ministerio de Economia, Fomento y Turismo.

Author information

Authors and Affiliations


Corresponding author

Correspondence to Cristina Dorador.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 1458 kb)

Rights and permissions

Reprints and Permissions

About this article

Verify currency and authenticity via CrossMark

Cite this article

Dorador, C., Fink, P., Hengst, M. et al. Microbial community composition and trophic role along a marked salinity gradient in Laguna Puilar, Salar de Atacama, Chile. Antonie van Leeuwenhoek 111, 1361–1374 (2018).

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI:


  • Halophiles
  • Stable isotopes
  • Fatty acids
  • Microbial mats
  • 16S rRNA gene sequencing
  • Flamingos