Abhilash AS, Baker BM, Trappmann B, Chen CS, Shenoy VB (2014) Remodeling of fibrous extracellular matrices by contractile cells: Predictions from discrete fiber network simulations. Biophys J 107(8):1829–1840
Article
Google Scholar
Alcaraz J, Mori H, Ghajar CM, Brownfield D, Galgoczy R, Bissell MJ (2011) Collective epithelial cell invasion overcomes mechanical barriers of collagenous extracellular matrix by a narrow tube-like geometry and MMP14-dependent local softening. Integr Biol 3(12):1153–1166
Article
Google Scholar
Ambrosi D, Ateshian G, Arruda E, Cowin S, Dumais J, Goriely A, Holzapfel G, Humphrey J, Kemkemer R, Kuhl E, Olberding J, Taber L, Garikipati K (2011) Perspectives on biological growth and remodeling. J Mech Phys Solids 59(4):863–883
MathSciNet
MATH
Article
Google Scholar
Austen K, Ringer P, Mehlich A, Chrostek-grashoff A, Kluger C, Klingner C, Sabass B, Zent R, Rief M, Grashoff C (2015) Extracellular rigidity sensing by talin isoform-specific mechanical linkages. Nat Cell Biol 17(12):1597–1606
Article
Google Scholar
BACI: A Comprehensive Multi-Physics Simulation Framework (2021) https://baci.pages.gitlab.lrz.de/website. Accessed 21 June 2021
Cukierman E, Pankov R, Yamada KM (2002) Cell interactions with three-dimensional matrices. Curr Opin Cell Biol 14(5):633–639
Article
Google Scholar
Baker BM, Chen CS (2012) Deconstructing the third dimension-how 3D culture microenvironments alter cellular cues. J Cell Sci 125(13):3015–3024
Google Scholar
Baker BM, Trappmann B, Wang WY, Sakar MS, Kim IL, Shenoy VB, Burdick JA, Chen CS (2015) Cell-mediated fibre recruitment drives extracellular matrix mechanosensing in engineered fibrillar microenvironments. Nat Mater 14(12):1262–1268
Article
Google Scholar
Balcioglu HE, Balasubramaniam L, Stirbat TV, Doss BL, Fardin MA, Mège RM, Ladoux B (2020) A subtle relationship between substrate stiffness and collective migration of cell clusters. Soft Matter 16(7):1825–1839
Article
Google Scholar
Ban E, Franklin JM, Nam S, Smith LR, Wang H, Wells RG, Chaudhuri O, Liphardt JT, Shenoy VB (2018) Mechanisms of Plastic Deformation in Collagen Networks Induced by Cellular Forces. Biophys J 114(2):450–461
Article
Google Scholar
Ban E, Wang H, Franklin JM, Liphardt JT, Janmey PA, Shenoy VB (2019) Strong triaxial coupling and anomalous Poisson effect in collagen networks. Proc Natl Acad Sci 116(14):6790–6799
Article
Google Scholar
Bates RC, Lincz LF, Burns GF (1995) Involvement of integrins in cell survival. Cancer Metastasis Rev 14(3):191–203
Article
Google Scholar
Bell GI (1980) Theoretical models for the specific adhesion of cells to cells or to surfaces. Adv Appl Probab 12(03):566–567
Article
Google Scholar
Bircher K, Zündel M, Pensalfini M, Ehret AE, Mazza E (2019) Tear resistance of soft collagenous tissues. Nat Commun 10(1):1–13
Article
Google Scholar
Bonnans C, Chou J, Werb Z (2014) Remodelling the extracellular matrix in development and disease. Nat Rev Mol Cell Biol 15(12):786–801
Article
Google Scholar
Braeu FA, Seitz A, Aydin RC, Cyron CJ (2017) Homogenized constrained mixture models for anisotropic volumetric growth and remodeling. Biomech Model Mechanobiol 16(3):889–906
Article
Google Scholar
Broedersz CP, Mao X, Lubensky TC, Mackintosh FC (2011) Criticality and isostaticity in fibre networks. Nat Phys 7(12):983–988
Article
Google Scholar
Brown RA, Prajapati R, McGrouther DA, Yannas IV, Eastwood M (1998) Tensional homeostasis in dermal fibroblasts: Mechanical responses to mechanical loading in three-dimensional substrates. J Cell Physiol 175(3):323–332
Article
Google Scholar
Brown RA, Sethi KK, Gwanmesia I, Raemdonck D, Eastwood M, Mudera V (2002) Enhanced fibroblast contraction of 3D collagen lattices and integrin expression by TGF-\(\beta\)1 and -\(\beta\)3: Mechanoregulatory growth factors? Exp Cell Res 274(2):310–322
Article
Google Scholar
Burkel B, Proestaki M, Tyznik S, Notbohm J (2018) Heterogeneity and nonaffinity of cell-induced matrix displacements. Phys Rev E 98(5):1–13
Article
Google Scholar
Campbell BH, Clark WW, Wang JHC (2003) A multi-station culture force monitor system to study cellular contractility. J Biomech 36(1):137–140
Article
Google Scholar
Cao X, Ban E, Baker BM, Lin Y, Burdick JA, Chen CS, Shenoy VB (2017) Multiscale model predicts increasing focal adhesion size with decreasing stiffness in fibrous matrices. Proc Natl Acad Sci 114(23):E4549–E4555
Article
Google Scholar
Carisey A, Tsang R, Greiner AM, Nijenhuis N, Heath N, Nazgiewicz A, Kemkemer R, Derby B, Spatz J, Ballestrem C (2013) Vinculin regulates the recruitment and release of core focal adhesion proteins in a force-dependent manner. Curr Biol 23(4):271–281
Article
Google Scholar
Cavalcanti-Adam EA, Volberg T, Micoulet A, Kessler H, Geiger B, Spatz JP (2007) Cell Spreading and Focal Adhesion Dynamics Are Regulated by Spacing of Integrin Ligands. Biophys J 92(8):2964–2974
Article
Google Scholar
Changede R, Xu X, Margadant F, Sheetz MP (2015) Nascent Integrin Adhesions Form on All Matrix Rigidities after Integrin Activation. Dev Cell 35(5):614–621
Article
Google Scholar
Chatterjee AP (2010) Nonuniform fiber networks and fiber-based composites: Pore size distributions and elastic moduli. J Appl Phys 108(6):063513
Article
Google Scholar
Cheng B, Wan W, Huang G, Li Y, Genin GM, Mofrad MR, Lu TJ, Xu F, Lin M (2020) Nanoscale integrin cluster dynamics controls cellular mechanosensing via FAKY397 phosphorylation. Sci Adv 6(10):eaax1909
Article
Google Scholar
Chiquet M, Gelman L, Lutz R, Maier S (2009) From mechanotransduction to extracellular matrix gene expression in fibroblasts. Biochim Biophys Acta 1793(5):911–920
Article
Google Scholar
Choquet D, Felsenfeld DP, Sheetz MP, Carolina N (1997) Extracellular Matrix Rigidity Causes Strengthening of Integrin - Cytoskeleton Linkages. Cell 88(1):39–48
Article
Google Scholar
Courderot-Masuyer C (2017) Mechanical Properties of Fibroblasts. In: Humbert P, Fanian F, Maibach H, Agache P (eds) Agache's Measuring the Skin. Springer, pp 903–909
Cox TR, Erler JT (2011) Remodeling and homeostasis of the extracellular matrix: implications for fibrotic diseases and cancer. Dis Model Mech 4(2):165–178
Article
Google Scholar
Cyron CJ, Wall WA (2012) Numerical method for the simulation of the Brownian dynamics of rod-like microstructures with three-dimensional nonlinear beam elements. Int J Numer Method Biomed Eng 90:955-987
MathSciNet
MATH
Google Scholar
Cyron CJ, Aydin RC, Humphrey JD (2016) A homogenized constrained mixture (and mechanical analog) model for growth and remodeling of soft tissue. Biomech Model Mechanobiol 15(6):1389–1403
Article
Google Scholar
Cyron CJ, Humphrey JD (2017) Growth and remodeling of load-bearing biological soft tissues. Meccanica 52(3):645–664
MathSciNet
Article
Google Scholar
Cyron CJ, Müller KW, Bausch AR, Wall WA (2013a) Micromechanical simulations of biopolymer networks with finite elements. J Comput Phys 244:236–251
MathSciNet
MATH
Article
Google Scholar
Cyron CJ, Müller KW, Schmoller KM, Bausch AR, Wall WA, Bruinsma RF (2013b) Equilibrium phase diagram of semi-flexible polymer networks with linkers. Epl 102(3):38003
Article
Google Scholar
Dahlmann-Noor AH, Martin-Martin B, Eastwood M, Khaw PT, Bailly M (2007) Dynamic protrusive cell behaviour generates force and drives early matrix contraction by fibroblasts. Exp Cell Res 313(20):4158–4169
Article
Google Scholar
Das M, Subbayya Ithychanda S, Qin J, Plow EF (2014) Mechanisms of talin-dependent integrin signaling and crosstalk. Biochim Biophys Acta 1838(2):579–588
Article
Google Scholar
Davidson MW, Ruehland S, Baird MA, Teo S, Bate N, Kanchanawong P, Goh WI, Wang Y, Goh H, Critchley DR, Liu J (2015) Talin determines the nanoscale architecture of focal adhesions. Proc Natl Acad Sci 112(35):E4864–E4873
Article
Google Scholar
Davoodi-Kermani I, Schmitter M, Eichinger JF, Aydin RC, Cyron CJ (2021) Computational study of the geometric properties governing the linear mechanical behavior of fiber networks (submitted)
Delvoye P, Wiliquet P, Levêque J-L, Nusgens BV, Lapière CM (1991) Measurement of Mechanical Forces Generated by Skin Fibroblasts Embedded in a Three-Dimensional Collagen Gel. J Invest Dermatol 97(5):898–902
Article
Google Scholar
Domaschke S, Morel A, Fortunato G, Ehret AE (2019) Random auxetics from buckling fibre networks. Nat Commun 10(1):1–8
Article
Google Scholar
Domaschke S, Morel A, Kaufmann R, Hofmann J, Rossi RM, Mazza E, Fortunato G, Ehret AE (2020) Predicting the macroscopic response of electrospun membranes based on microstructure and single fibre properties. J Mech Behav Biomed Mater 104:103634
Article
Google Scholar
Dong S, Huang Z, Tang L, Zhang X, Zhang Y, Jiang Y (2017) A three-dimensional collagen-fiber network model of the extracellular matrix for the simulation of the mechanical behaviors and micro structures. Comput Methods Biomech Biomed Engin 20(9):991–1003
Article
Google Scholar
Dumbauld DW, Lee TT, Singh A, Scrimgeour J, Gersbach CA, Zamir EA, Fu J, Chen CS, Curtis JE, Craig SW (2013) How vinculin regulates force transmission. Proc Natl Acad Sci 110(24):9788–9793
Article
Google Scholar
Duval K, Grover H, Han LH, Mou Y, Pegoraro AF, Fredberg J, Chen Z (2017) Modeling physiological events in 2D vs. 3D cell culture. Physiology 32(4):266–277
Article
Google Scholar
Eichinger JF, Paukner D, Szafron JM, Aydin RC, Humphrey JD, Cyron CJ (2020) Computer-Controlled Biaxial Bioreactor for Investigating Cell-Mediated Homeostasis in Tissue Equivalents. J Biomech Eng 142(7):1–22
Article
Google Scholar
Eichinger JF, Haeusel LJ, Paukner D, Aydin RC, Humphrey JD, Cyron CJ (2021) Mechanical homeostasis in tissue equivalents: a review. Biomech Model Mechanobiol 20:833–850
Article
Google Scholar
Elosegui-Artola A, Bazellières E, Allen MD, Andreu I, Oria R, Sunyer R, Gomm JJ, Marshall JF, Jones JL, Trepat X, Roca-Cusachs P (2014) Rigidity sensing and adaptation through regulation of integrin types. Nat Mater 13(6):631–637
Article
Google Scholar
Ezra DG, Ellis JS, Beaconsfield M, Collin R, Bailly M (2010) Changes in fibroblast mechanostat set point and mechanosensitivity: An adaptive response to mechanical stress in floppy eyelid syndrome. Investig Ophthalmol Vis Sci 51(8):3853–3863
Article
Google Scholar
Grashoff C, Hoffman BD, Brenner MD, Zhou R, Parsons M, Yang MT, McLean MA, Sligar SG, Chen CS, Ha T, Schwartz MA (2010) Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics. Nature 466(7303):263–266
Article
Google Scholar
Grill MJ, Eichinger JF, Koban J, Meier C, Lieleg O, Wall WA (2021) Modeling and Simulation of the Hindered Mobility of Charged Particles in Biological Hydrogel. Proc R Soc A 477(2249):20210039
Article
Google Scholar
Grimmer P, Notbohm J (2017) Displacement Propagation in Fibrous Networks Due to Local Contraction. J Biomech Eng 140(4):1–11
Google Scholar
Grinnell F, Petroll WM (2010) Cell Motility and Mechanics in Three-Dimensional Collagen Matrices. Annu Rev Cell Dev Biol 26(1):335–361
Article
Google Scholar
Hall MS, Alisafaei F, Ban E, Feng X, Hui C-Y, Shenoy VB, Wu M (2016) Fibrous nonlinear elasticity enables positive mechanical feedback between cells and ECMs. Proc Natl Acad Sci 113(49):14043–14048
Article
Google Scholar
Heussinger C, Frey E (2007) Force distributions and force chains in random stiff fiber networks. Eur Phys J E 24(1):47–53
Article
Google Scholar
Hippler M, Weißenbruch K, Richler K, Lemma ED, Nakahata M, Richter B, Barner-kowollik C, Takashima Y, Harada A, Blasco E, Wegener M, Tanaka M, Bastmeyer M (2020) Mechanical stimulation of single cells by reversible host-guest interactions in 3D microscaffolds. Sci Adv 6(39):eabc2648
Article
Google Scholar
Horzum U, Ozdil B, Pesen-Okvur D (2014) Step-by-step quantitative analysis of focal adhesions. MethodsX 1(1):56–59
Article
Google Scholar
Hulmes DJ (1979) Quasi-hexagonal molecular packing in collagen fibrils. Nature 282(5741):878–880
Article
Google Scholar
Humphrey JD, Dufresne ER, Schwartz MA (2014) Mechanotransduction and extracellular matrix homeostasis. Nat Rev Mol Cell Biol 15(12):802–812
Article
Google Scholar
Humphrey JD, Rajagopal KR (2002) A constrained mixture model for growth and remodeling of soft tissues. Math Model Methods Appl Sci 12(3):407–430
MathSciNet
MATH
Article
Google Scholar
Humphries DL, Grogan JA, Gaffney EA (2018) The mechanics of phantom Mikado networks. J Phys Commun 2(5):055015
Article
Google Scholar
Humphries DL, Grogan JA, Gaffney EA (2017) Mechanical Cell-Cell Communication in Fibrous Networks: The Importance of Network Geometry. Bull Math Biol 79(3):498–524
MathSciNet
MATH
Article
Google Scholar
Jansen KA, Donato DM, Balcioglu HE, Schmidt T, Danen EHJ, Koenderink GH (2015) A guide to mechanobiology: Where biology and physics meet. Biochim Biophys Acta 1853(11):3043–3052
Article
Google Scholar
Jansen KA, Licup AJ, Sharma A, Rens R, MacKintosh FC, Koenderink GH (2018) The Role of Network Architecture in Collagen Mechanics. Biophys J 114(11):2665–2678
Article
Google Scholar
Jones CAR, Cibula M, Feng J, Krnacik EA, McIntyre DH, Levine H, Sun B (2015) Micromechanics of cellularized biopolymer networks. Proc Natl Acad Sci 112(37):E5117–E5122
Article
Google Scholar
Jones CAR, Liang L, Lin D, Jiao Y, Sun B (2014) The spatial-temporal characteristics of type I collagen-based extracellular matrix. Soft Matter 10(44):8855–8863
Article
Google Scholar
Joshi J, Mahajan G, Kothapalli CR (2018) Three-dimensional collagenous niche and azacytidine selectively promote time-dependent cardiomyogenesis from human bone marrow-derived MSC spheroids. Biotechnol Bioeng 115(8):2013–2026
Article
Google Scholar
Karamichos D, Brown RA, Mudera V (2007) Collagen stiffness regulates cellular contraction and matrix remodeling gene expression. J Biomed Mater Res, Part A 83A(3):887–894
Article
Google Scholar
Kim DH, Wirtz D (2013) Focal adhesion size uniquely predicts cell migration. FASEB J 27(4):1351–1361
Article
Google Scholar
Kim J, Mao X, Jones CAR, Feng J, Sun B, Sander LM, Levine H (2017) Stress-induced plasticity of dynamic collagen networks. Nat Commun 8(1):842
Article
Google Scholar
Kim J, Zheng Y, Alobaidi AA, Nan H, Tian J, Jiao Y, Sun B (2020) Geometric Dependence of 3D Collective Cancer Invasion. Biophys J 118(5):1177–1182
Article
Google Scholar
Kirkpatrick S, Gelatt CD, Vecchi MP (1983) Optimization by simulated annealing. Science 220(4598):671–680
MathSciNet
MATH
Article
Google Scholar
Kong F, García AJ, Mould AP, Humphries MJ, Zhu C (2009) Demonstration of catch bonds between an integrin and its ligand. J Cell Biol 185(7):1275–1284
Article
Google Scholar
Lang NR, Münster S, Metzner C, Krauss P, Schürmann S, Lange J, Aifantis KE, Friedrich O, Fabry B, Lange J, Friedrich O, Münster S, Lang NR, Schürmann S, Krauss P, Fabry B (2013) Estimating the 3D pore size distribution of biopolymer networks from directionally biased data. Biophys J 105(9):1967–1975
Article
Google Scholar
Lee B, Zhou X, Riching K, Eliceiri KW, Keely PJ, Guelcher SA, Weaver AM, Jiang Y (2014) A three-dimensional computational model of collagen network mechanics. PLoS ONE 9(11):1–12
Google Scholar
Lerche M, Elosegui-Artola A, Guzmán C, Georgiadou M, Kechagia JZ, Gulberg D, Roca-Cusachs P, Peuhu E, Ivaska J (2019) Integrin binding dynamics modulate ligand-specific mechanosensing in mammary gland fibroblasts. iScience 23(9):101507
Liang L, Jones C, Chen S, Sun B, Jiao Y (2016) Heterogeneous force network in 3D cellularized collagen networks. Phys Biol 13(6):1–11
Article
Google Scholar
Lindström SB, Vader DA, Kulachenko A, Weitz DA (2010) Biopolymer network geometries: Characterization, regeneration, and elastic properties. Phys Rev E Stat Nonlin Soft Matter Phys 82(5):051905
Article
Google Scholar
López-García M, Selhuber-Unkel C, Spatz JP, Erdmann T, Schwarz US, Kessler H (2010) Cell Adhesion Strength Is Controlled by Intermolecular Spacing of Adhesion Receptors. Biophys J 98(4):543–551
Article
Google Scholar
Lu P, Takai K, Weaver VM, Werb Z (2011) Extracellular Matrix degradation and remodeling in development and disease. Cold Spring Harb Perspect Biol 3(12):1–24
Article
Google Scholar
Ma X, Schickel ME, Stevenson MD, Sarang-Sieminski AL, Gooch KJ, Ghadiali SN, Hart RT (2013) Fibers in the extracellular matrix enable long-range stress transmission between cells. Biophys J 104(7):1410–1418
Article
Google Scholar
Malandrino A, Trepat X, Kamm RD, Mak M (2019) Dynamic filopodial forces induce accumulation, damage, and plastic remodeling of 3D extracellular matrices. PLoS Comput Biol 15(4):1–26
Article
Google Scholar
Mammoto A, Mammoto T, Ingber DE (2012) Mechanosensitive mechanisms in transcriptional regulation. J Cell Sci 125(13):3061–3073
Google Scholar
Mann A, Sopher RS, Goren S, Shelah O, Tchaicheeyan O, Lesman A (2019) Force chains in cell-cell mechanical communication. J R Soc Interface 16(159):20190348
Article
Google Scholar
Marenzana M, Wilson-Jones N, Mudera V, Brown RA (2006) The origins and regulation of tissue tension: Identification of collagen tension-fixation process in vitro. Exp Cell Res 312(4):423–433
Article
Google Scholar
Mason DE, Collins JM, Dawahare JH, Nguyen TD, Lin Y, Voytik-Harbin SL, Zorlutuna P, Yoder MC, Boerckel JD (2019) YAP and TAZ limit cytoskeletal and focal adhesion maturation to enable persistent cell motility. J Cell Biol 218(4):1369–1389
Article
Google Scholar
Mauri A, Hopf R, Ehret AE, Picu CR, Mazza E (2016) A discrete network model to represent the deformation behavior of human amnion. J Mech Behav Biomed Mater 58:45–56
Article
Google Scholar
Mickel W, Münster S, Jawerth LM, Vader DA, Weitz DA, Sheppard AP, Mecke K, Fabry B, Schröder-Turk GE (2008) Robust pore size analysis of filamentous networks from three-dimensional confocal microscopy. Biophys J 95(12):6072–6080
Article
Google Scholar
Miroshnikova YA, Jorgens DM, Spirio L, Auer M, Sarang-Sieminski AL, Weaver VM (2011) Engineering strategies to recapitulate epithelial morphogenesis within synthetic three-dimensional extracellular matrix with tunable mechanical properties. Phys Biol 8(2):026013
Article
Google Scholar
Mogilner A, Oster G (2003) Force Generation by Actin Polymerization II : The Elastic Ratchet and Tethered Filaments. Biophys J 84(3):1591–1605
Article
Google Scholar
Moore SW, Roca-Cusachs P, Sheetz MP (2010) Stretchy proteins on stretchy substrates: The important elements of integrin-mediated rigidity sensing. Dev Cell 19(2):194–206
Article
Google Scholar
Motte S, Kaufman LJ (2013) Strain stiffening in collagen I networks. Biopolymers 99(1):35–46
Article
Google Scholar
Müller KW, Bruinsma RF, Lieleg O, Bausch AR, Wall WA, Levine AJ (2014) Rheology of semiflexible bundle networks with transient linkers. Phys Rev Lett 112(23):1–5
Article
Google Scholar
Müller KW, Cyron CJ, Wall WA (2015) Computational analysis of morphologies and phase transitions of cross-linked, semi-flexible polymer networks. Proc R Soc A 471(2182):20150332
MathSciNet
MATH
Article
Google Scholar
Murtada SC, Kroon M, Holzapfel GA (2010) A calcium-driven mechanochemical model for prediction of force generation in smooth muscle. Biomech Model Mechanobiol 9(6):749–762
Article
Google Scholar
Murtada SC, Arner A, Holzapfel GA (2012) Experiments and mechanochemical modeling of smooth muscle contraction: Significance of filament overlap. J Theor Biol 297:176–186
MathSciNet
MATH
Article
Google Scholar
Nam S, Hu KH, Butte MJ, Chaudhuri O (2016) Strain-enhanced stress relaxation impacts nonlinear elasticity in collagen gels. Proc Natl Acad Sci 113(20):5492–5497
Article
Google Scholar
Nan H, Jiao Y, Liu R, Chen G, Liu L, Liang L (2018) Realizations of highly heterogeneous collagen networks via stochastic reconstruction for micromechanical analysis of tumor cell invasion. Phys Rev E 97(3):33311
Article
Google Scholar
Nguyen DT, Nagarajan N, Zorlutuna P (2018) Effect of Substrate Stiffness on Mechanical Coupling and Force Propagation at the Infarct Boundary. Biophys J 115(10):1966–1980
Article
Google Scholar
Notbohm J, Lesman A, Tirrell DA, Ravichandran G (2015) Quantifying cell-induced matrix deformation in three dimensions based on imaging matrix fibers. Integr Biol 7(10):1186–1195
Article
Google Scholar
Reissner E (1981) On finite deformations of space-curved beams. ZAMP Zeitschrift für Angew Math und Phys 32(6):734–744
MATH
Article
Google Scholar
Ringer P, Weißl A, Cost A-L, Freikamp A, Sabass B, Mehlich A, Tramier M, Rief M, Grashoff C (2017) Multiplexing molecular tension sensors reveals piconewton force gradient across talin-1. Nat Methods 14(11):1090–1096
Article
Google Scholar
Ronceray P, Broedersz CP, Lenz M (2016) Fiber networks amplify active stress. Proc Natl Acad Sci 113(11):2827–2832
Article
Google Scholar
Ross TD, Coon BG, Yun S, Baeyens N, Tanaka K, Ouyang M, Schwartz MA (2013) Integrins in mechanotransduction. Curr Opin Cell Biol 25(5):613–618
Article
Google Scholar
Rycroft CH (2009) VORO++: A three-dimensional Voronoi cell library in C++. Chaos 19(4):1–16
Article
Google Scholar
Schwartz MA (1995) Integrins: Emerging Paradigms of Signal Transduction. Annu Rev Cell Dev Biol 11(1):549–599
Article
Google Scholar
Seo BR, Chen X, Ling L, Song YH, Shimpi AA, Choi S, Gonzalez J, Sapudom J, Wang K, Eguiluz RCA, Gourdon D, Shenoy VB, Fischbach C (2020) Collagen microarchitecture mechanically controls myofibroblast differentiation. Proc Natl Acad Sci 117(21):11387–11398
Article
Google Scholar
Sethi KK, Yannas IV, Mudera V, Eastwood M, McFarland C, Brown RA (2002) Evidence for sequential utilization of fibronectin, vitronectin, and collagen during fibroblast-mediated collagen contraction. Wound Repair Regen 10(6):397–408
Article
Google Scholar
Shi Q, Ghosh RP, Engelke H, Rycroft CH, Cassereau L, Sethian JA, Weaver VM, Liphardt JT (2013) Rapid disorganization of mechanically interacting systems of mammary acini. Proc Natl Acad Sci 111(2):658–663
Article
Google Scholar
Simo J C (1985) A finite strain beam formulation. The three-dimensional dynamic problem. Part I. Comput Methods Appl Mech Eng 49(1):55–70
MATH
Article
Google Scholar
Simo J C, Vu-Quoc L (1986) A three-dimensional finite-strain rod model. part II: Computational aspects. Comput Methods Appl Mech Eng 58(1):79–116
MATH
Article
Google Scholar
Simon DD, Horgan CO, Humphrey JD (2012) Mechanical restrictions on biological responses by adherent cells within collagen gels. J Mech Behav Biomed Mater 14:216–226
Article
Google Scholar
Simon DD, Niklason LE, Humphrey JD (2014) Tissue Transglutaminase, Not Lysyl Oxidase, Dominates Early Calcium-Dependent Remodeling of Fibroblast-Populated Collagen Lattices. Cells Tissues Organs 200(2):104–117
Article
Google Scholar
Stehbens SJ, Wittmann T (2014) Analysis of focal adhesion turnover: a quantitative live-cell imaging example. Methods Cell Biol 123:335–346
Article
Google Scholar
Stein AM, Vader DA, Jawerth LM, Weitz DA, Sander LM (2008) An algorithm for extracting the network geometry of three-dimensional collagen gels. J Microsc 232(3):463–475
MathSciNet
Article
Google Scholar
Stein AM, Vader DA, Weitz DA, Sander LM (2010) The Micromechanics of Three-Dimensional Collagen-I Gels. Complexity 16(4):22–28
Article
Google Scholar
Sukharev S, Sachs F (2012) Molecular force transduction by ion channels - diversity and unifying principles. J Cell Sci 125(13):3075–3083
Google Scholar
Truong T, Shams H, Mofrad MRK (2015) Mechanisms of integrin and filamin binding and their interplay with talin during early focal adhesion formation. Integr Biol 7(10):1285–1296
Article
Google Scholar
Van Der Rijt JAJ, Van Der Werf KO, Bennink ML, Dijkstra PJ, Feijen J (2006) Micromechanical testing of individual collagen fibrils. Macromol Biosci 6(9):699–702
Google Scholar
Wang H, Abhilash AS, Chen CS, Wells RG, Shenoy VB (2014) Long-Range Force Transmission in Fibrous Matrices Enabled by Tension-Driven Alignment of Fibers. Biophys J 107(11):2592–2603
Article
Google Scholar
Wang Y, Wang G, Luo X, Qiu J, Tang C (2012) Substrate stiffness regulates the proliferation, migration, and differentiation of epidermal cells. Burns 38(3):414–420
Article
Google Scholar
Weng S, Shao Y, Chen W, Fu J (2016) Mechanosensitive subcellular rheostasis drives emergent single-cell mechanical homeostasis. Nat Mater 15(9):961–967
Article
Google Scholar
Wiseman PW (2004) Spatial mapping of integrin interactions and dynamics during cell migration by Image Correlation Microscopy. J Cell Sci 117(23):5521–5534
Article
Google Scholar
Xie J, Bao M, Bruekers SMC, Huck WTS (2017) Collagen Gels with Different Fibrillar Microarchitectures Elicit Different Cellular Responses. ACS Appl Mater Interfaces 9(23):19630–19637
Article
Google Scholar
Yao M, Goult BT, Chen H, Cong P, Sheetz MP, Yan J (2014) Mechanical activation of vinculin binding to talin locks talin in an unfolded conformation. Sci Rep 4:4610
Article
Google Scholar
Yao M, Goult BT, Klapholz B, Hu X, Toseland CP, Guo Y, Cong P, Sheetz MP, Yan J (2016) The mechanical response of talin. Nat Commun 7:11966
Article
Google Scholar
Yeong CLY, Torquato S (1998) Reconstructing Random Media I and II. Phys Rev E 58(1):224–233
MathSciNet
Article
Google Scholar
Zemel A (2015) Active mechanical coupling between the nucleus, cytoskeleton and the extracellular matrix, and the implications for perinuclear actomyosin organization. Soft Matter 11(12):2353–2363
Article
Google Scholar
Zheng Y, Nan H, Liu Y, Fan Q, Wang X, Liu R, Liu L, Ye F, Sun B, Jiao Y (2019) Modeling cell migration regulated by cell extracellular-matrix micromechanical coupling. Phys Rev E 100(4):43303
Article
Google Scholar
Zhou D, Zhang L, Mao X (2018) Topological Edge Floppy Modes in Disordered Fiber Networks. Phys Rev Lett 120(6):68003
Article
Google Scholar
Zhu C, Pérez-González C, Trepat X, Chen Y, Castro N, Oria R, Roca-Cusachs P, Elosegui-Artola A, Kosmalska A (2016) Mechanical regulation of a molecular clutch defines force transmission and transduction in response to matrix rigidity. Nat Cell Biol 18(5):540–548
Article
Google Scholar
Zhu YK, Umino T, Liu XD, Wang HJ, Romberger DJ, Spurzem JR, Rennard SI (2001) Contraction of Fibroblast-Containing Collagen Gels: Initial Collagen Concentration Regulates the Degree of Contraction and Cell Survival. Vitro Cell Dev Biol Anim 37(1):10–16
Article
Google Scholar
Ziegler W, Gingras A, Critchley D, Emsley J (2008) Integrin connections to the cytoskeleton through talin and vinculin. Biochem Soc Trans 36(2):235–239
Article
Google Scholar