Abstract
Rheum tanguticum is a widely used Chinese medicinal plant. Recently, because of the great demand, the wild populations have been declining rapidly. In this study, the levels of genetic variation of 11 wild and five cultivated populations of R. tanguticum were investigated by ISSR markers. The 13 selected ISSR primers amplified 306 polymorphic bands out of a total of 326 (93.87 %). Based on Nei’s gene diversity and Shannon’s index, the genetic diversity in cultivated populations of R. tanguticum (H = 0.2490; I = 0.3812; H B = 0.3033) was relatively lower than that of wild populations (H = 0.2666; I = 0.4124; H B = 0.3115), although no significant differences were identified. Assignment was performed with AFLPOP program, and XGM was the most likely source population of HM. The origins of the rest cultivated populations were admixture. UPGMA and PCoA analyses showed that wild and cultivated populations were not separated into two groups, indicating that a large number of wild genotypes were maintained in the cultivated gene pool. The coefficient of genetic differentiation between wild and cultivated populations was 0.0305 (G st), which was in good agreement with the results of analysis of molecular variance (AMOVA), in which, only 1.85 % of the total variance existed between groups of wild and cultivated populations, while 70.91 % occurred within populations and 27.24 % among populations. Together, these results indicated that cultivated populations were not genetically differentiated from wild populations. On the basis of this study, we have made some suggestions for the conservation and efficient management of the genetic resources of this important medicinal herb.
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Alves MF, Barroso PAV, Ciampi AY, Hoffmann LV, Azevedo VCR, Cavalcante U (2013) Diversity and genetic structure among subpopulations of Gossypium mustelinum (Malvaceae). Gen Mol Res 12(1):597–609. doi:10.4238/2013.February.27.9
Buzatti RSD, Ribeiro RA, de Lemos JP, Lovato MB (2012) Fine-scale spatial genetic structure of Dalbergia nigra (Fabaceae), a threatened and endemic tree of the Brazilian Atlantic Forest. Genet Mol Biol 35(4):838–846
Chen F, Wang A, Chen K, Wan D, Liu J (2009) Genetic diversity and population structure of the endangered and medically important Rheum tanguticum (Polygonaceae) revealed by SSR Markers. Biochem Syst Ecol 37(5):613–621
Chen DX, Li LY, Zhang X, Wang Y, Zhang Z (2013) Genetic diversity in wild Dipsacus chinensis populations from China based on ISSR markers. Gen Mol Res 12(2):1205–1213. doi:10.4238/2013.April.12.7
Chinese Pharmacopoeia Commission (2010) Pharmacopoeia of the People’s Republic of China, vol 1. China Medical Science Press, Beijing
de Oliveira LO, Venturini BA, Rossi AAB, Hastenreiter SS (2010) Clonal diversity and conservation genetics of the medicinal plant Carapichea ipecacuanha (Rubiaceae). Genet Mol Biol 33(1):86–93
Doyle J, Doyle J (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical bulletin 19(1):11–15
Duchesne P, Bernatchez L (2002) AFLPOP: a computer program for simulated and real population allocation, based on AFLP data. Mol Ecol Notes 2(3):380–383. doi:10.1046/j.1471-8278.2002.00251.x
Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131(2):479–491
Guo HB, Lu BR, Wu QH, Chen JK, Zhou TS (2007) Abundant genetic diversity in cultivated Codonopsis pilosula populations revealed by RAPD polymorphisms. Genet Resour Crop Evol 54(5):917–924. doi:10.1007/s10722-006-9163-8
Hamrick JL, Godt MJW (1996) Effects of life history traits on genetic diversity in plant species. Philos Trans R Soc Lond Ser B Biol Sci 351(1345):1291–1298
He TH, Krauss SL, Lamont BB, Miller BP, Enright NJ (2004) Long-distance seed dispersal in a metapopulation of Banksia hookeriana inferred from a population allocation analysis of amplified fragment length polymorphism data. Mol Ecol 13(5):1099–1109. doi:10.1111/j.1365-294X.2004.02120.x
He J, Wang H, Li DZ, Chen SF (2007) Genetic diversity of Paris polyphylla var. yunnanensis, a traditional chinese medicinal herb, detected by ISSR markers. Planta Med 73(12):1316–1321. doi:10.1055/s-2007-981617
He JS, Chen L, Si Y, Huang B, Ban XQ, Wang YW (2009) Population structure and genetic diversity distribution in wild and cultivated populations of the traditional Chinese medicinal plant Magnolia officinalis subsp. biloba (Magnoliaceae). Genetica 135(2):233–243. doi:10.1007/s10709-008-9272-8
Hernandez-Verdugo S, Luna-Reyes R, Oyama K (2001) Genetic structure and differentiation of wild and domesticated populations of Capsicum annuum (Solanaceae) from Mexico. Plant Syst Evol 226(3–4):129–142. doi:10.1007/s006060170061
Holsinger KE, Lewis PO (2003) HICKORY: a package for analysis of population genetic data V1. 1. Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, USA
Holsinger KE, Wallace LE (2004) Bayesian approaches for the analysis of population genetic structure: an example from Platanthera leucophaea (Orchidaceae). Mol Ecol 13(4):887–894. doi:10.1111/j.1365-294X.2004.02052.x
Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Mol Ecol 11(7):1157–1164
Hu Y, Wang L, Xie X, Yang J, Li Y, Zhang H (2010) Genetic diversity of wild populations of Rheum tanguticum endemic to China as revealed by ISSR analysis. Biochem Syst Ecol 38(3):264–274
Hu Y, Li W, Yi L (2011) New occurrence of B chromosomes in Rheum tanguticum Maxim. ex Balf. (Polygonaceae). Caryologia 64(3):320–324
Jin W, Wang YF, Ge RL, Shi HM, Jia CQ, Tu PF (2007) Simultaneous analysis of multiple bioactive constituents in Rheum tanguticum Maxim. ex Balf. by high-performance liquid chromatography coupled to tandem mass spectrometry. Rapid Commun Mass Spectrom 21(14):2351–2360. doi:10.1002/rcm.3086
Komatsu K, Nagayama Y, Tanaka K, Ling Y, Basnet P, Meselhy MR (2006) Development of a high performance liquid chromatographic method for systematic quantitative analysis of chemical constituents in rhubarb. Chem Pharm Bull (Tokyo) 54(7):941–947
Kumchai J, Wei YC, Lee CY, Chen FC, Chin SW (2013) Production of interspecific hybrids between commercial cultivars of the eggplant (Solanum melongena L.) and its wild relative S. torvum. Gen Mol Res 12(1):755–764
Li A (2003) Flora of China. Science Press, Beijing
Li M, Li LX, Liu Y, Liu Y (2006) Study survey on rhubarb in recent years. World Sci Technol-Mod Tradit Chin Med Materia Medica 8(4):34–39
Li XR, Tan LB, Zhu ZF, Huang HY, Liu Y, Hu SN, Sun CQ (2009) Patterns of nucleotide diversity in wild and cultivated rice. Plant Syst Evol 281(1–4):97–106. doi:10.1007/s00606-009-0191-7
Liu S (1997) Flora of Qinghai, vol 2. Qinghai People’s Publishing House, Xining
Liu L, Yuan S, Long Y, Guo Z, Sun Y, Li Y, Niu Y, Li C, Mei Q (2009) Immunomodulation of Rheum tanguticum polysaccharide (RTP) on the immunosuppressive effects of dexamethasone (DEX) on the treatment of colitis in rats induced by 2,4,6-trinitrobenzene sulfonic acid. Int Immunopharmacol 9(13–14):1568–1577
Lu J, Yang X, Ma R (2008) Genetic diversity of clonal plant Polygonum viviparum based RAPD in eastern Qinghai-Tibet Plateau of China. J Northwest Norm Univ (Nat Sci) 44(3):66–72
Martins S, Simões F, Matos J, Silva A, Carnide V (2013) Genetic relationship among wild, landraces and cultivars of hazelnut (Corylus avellana) from Portugal revealed through ISSR and AFLP markers. Plant Syst Evol. doi:10.1007/s00606-013-0942-3
McDermott J, McDonald B (1993) Gene flow in plant pathosystems. Annu Rev Phytopathol 31(1):353–373
Miller M (1997) Tools for population genetic analyses (TFPGA) 1.3: A Windows program for the analysis of allozyme and molecular population genetic data. Department of Biological Sciences, Northern Arizona University, Arizona, USA
Miller AJ, Schaal BA (2006) Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Mol Ecol 15(6):1467–1480. doi:10.1111/j.1365-294X.2006.02834.x
Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70(12):3321–3323
Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89(3):583–590
Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13(5):1143–1155
Otero-Arnaiz A, Casas A, Hamrick JL, Cruse-Sanders J (2005) Genetic variation and evolution of Polaskia chichipe (Cactaceae) under domestication in the Tehuacan Valley, central Mexico. Mol Ecol 14(6):1603–1611. doi:10.1111/j.1365-294X.2005.02494.x
Qiu YX, Zong M, Yao Y, Chen BL, Zhou XL, Chen ZL, Fu CX (2009) Genetic variation in wild and cultivated Rhizoma Corydalis revealed by ISSRs markers. Planta Med 75(1):94–98. doi:10.1055/s-0028-1088365
Rohlf F (2000) NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.1. New York, USA
Satya P, Karan M, Kar CS, Mahapatra AK, Mahapatra BS (2013) Assessment of molecular diversity and evolutionary relationship of kenaf (Hibiscus cannabinus L.), roselle (H. sabdariffa L.) and their wild relatives. Plant Syst Evo 299(3):619–629. doi:10.1007/s00606-012-0748-8
Shi W, Yang CF, Chen JM, Guo YH (2008) Genetic variation among wild and cultivated populations of the Chinese medicinal plant Coptis chinensis (Ranunculaceae). Plant Biol 10(4):485–491. doi:10.1111/j.1438-8677.2008.00035.x
Smith JF, Bateman TA (2002) Genetic differentiation of rare and common varieties of Eriogonum shockleyi (Polygonaceae) in Idaho using ISSR variability. West N Am Nat 62(3):316–326
Song Z, Li X, Wang H, Wang J (2010) Genetic diversity and population structure of Salvia miltiorrhiza Bge in China revealed by ISSR and SRAP. Genetica 138:241–249
Spiegelhalter DJ, Best NG, Carlin BR, van der Linde A (2002) Bayesian measures of model complexity and fit. J R Stat Soc Ser B Stat Methodol 64:583–616. doi:10.1111/1467-9868.00353
SPSS I (2007) SPSS 16.0 for Windows. SPSS, Inc, Chicago
Tero N, Aspi J, Siikamäki P, Jäkäläniemi A, Tuomi J (2003) Genetic structure and gene flow in a metapopulation of an endangered plant species, Silene tatarica. Mol Ecol 12(8):2073–2085
The People’s Government of Qinghai Province (2009) List of key protected wild plants of Qinghai Province. Qinghai Prataculture 18(1):50–51
Verma S, Rana TS (2013) Genetic relationships among wild and cultivated accessions of curry leaf plant (Murraya koenigii (L.) Spreng.), as revealed by DNA fingerprinting methods. Mol Biotechnol 53(2):139–149. doi:10.1007/s12033-012-9500-4
Wang XM (2010) Optimization of DNA isolation, ISSR-PCR system and primers screening of genuine species of rhubarb, an important herbal medicine in China. J Med Plants Res 4(10):904–908
Wang X, Ren Y (2009) Rheum tanguticum, an endangered medicinal plant endemic to China. J Med Plants Res 3(13):1195–1203
Wang XM, Hou XQ, Zhang YQ, Yang R, Feng SF, Li Y, Ren Y (2012a) Genetic diversity of the endemic and medicinally important plant Rheum officinale as revealed by inter-simple sequence repeat (issr) markers. Int J Mol Sci 13(3):3900–3915. doi:10.3390/ijms13033900
Wang X, Yang R, Feng S, Hou X, Zhang Y, Li Y, Ren Y (2012b) Genetic variation in Rheum palmatum and Rheum tanguticum (Polygonaceae), two medicinally and endemic species in China using ISSR markers. PLoS One 7(12):e51667. doi: 10.1371/journal.pone.0051667
Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS (2005) The effects of artificial selection on the maize genome. Sci 308(5726):1310–1314. doi:10.1126/science.1107891
Wu HF, Li Z, Huang H (2006) Genetic differentiation among natural populations of Gastrodia elata (Orchidaceae) in Hubei and germplasm assessment of the cultivated populations. Biodivers Sci 14(4):315–326
Xie X (2009) Studies on testing rules and qualities grading standards for Rheum tanguticum Maxim. ex Balf. seed. Graduate University of the Chinese Academy of Sciences, Xining
Xu XW, Ke WD, Yu XP, Wen J, Ge S (2008) A preliminary study on population genetic structure and phylogeography of the wild and cultivated Zizania latifolia (Poaceae) based on Adh1a sequences. Theor Appl Genet 116(6):835–843. doi:10.1007/s00122-008-0717-3
Yang YC (1991) Tibetan medicine. Qinghai People’s Press, Xining
Yang M, Zhang D, Zheng J, Liu J (2001) Pollen morphology and its systematic and ecological significance in Rheum (Polygonaceae) from China. Nord J Bot 21(4):411–418
Yang ST, Chen C, Zhao YP, Xi W, Zhou XL, Chen BL, Fu CX (2011) Association between chemical and genetic variation of wild and cultivated populations of Scrophularia ningpoensis Hemsl. Planta Med 77(8):865–871. doi:10.1055/s-0030-1250601
Yao X, Deng J, Huang H (2012) Genetic diversity in Eucommia ulmoides (Eucommiaceae), an endangered traditional Chinese medicinal plant. Conserv Genet 13(6):1499–1507. doi:10.1007/s10592-012-0393-3
Yeh F, Yang R, Boyle T (1999) POPGENE version 1.32. Microsoft window-based freeware for population genetic analysis. Molecular Biology and Biotechnology Center, University of Alberta, Canada
Yue XL, Chen JM, Guo YH, Wang QF (2012) Fine-scale spatial genetic structure of an endangered marsh herb, Caldesia grandis (Alismataceae). Gen Mol Res 11(3):2412–2421. doi:10.4238/2012.May.18.10
Zhang XF (2004) Xining rhubarb. Science Press, Xi’an
Zhang D, Chen S, Gao Q (2007) Patterns of genetic variation in Swertia przewalskii, an endangered endemic species of the Qinghai-Tibet Plateau. Biochem Genet 45(1):33–50
Zheng JY, Wang H, Chen XX, Wang P, Gao P, Li XN, Zhu GP (2012) Microsatellite markers for assessing genetic diversity of the medicinal plant Paris polyphylla var. chinensis (Trilliaceae). Gen Mol Res 11(3):1975–1980
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This work was supported by National Key Technology R&D Program of China (2012BAC08B04), National Nature Science Foundation of China (31200245) and West Light Foundation of the Chinese Academy of Sciences for Doctors (2011).
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Hu, Y., Wang, L., Xie, X. et al. Genetic variation in cultivated rhubarb (Rheum tanguticum Maxim. ex Balf.) and the relationship with their wild relatives in China revealed by ISSR markers. Plant Syst Evol 300, 2217–2227 (2014). https://doi.org/10.1007/s00606-014-1039-3
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DOI: https://doi.org/10.1007/s00606-014-1039-3