Abstract
Key message
FLO6 is involved in starch synthesis by interacting with SSIVb and GBSS in rice.
Abstract
Starch synthesized and stored in plastids including chloroplasts and amyloplasts plays a vital role in plant growth and provides the major energy for human diet. However, the molecular mechanisms by which regulate starch synthesis remain largely unknown. In this study, we identified and characterized a rice floury endosperm mutant M39, which exhibited defective starch granule formation in pericarp and endosperm, accompanied by the decreased starch content and amylose content. The abnormal starch accumulation in M39 pollen grains caused a significant decrease in plant fertility. Chloroplasts in M39 leaves contained no or only one large starch granule. Positional cloning combined with complementary experiment demonstrated that the mutant phenotypes were restored by the FLOURY ENDOSPERM6 (FLO6). FLO6 was generally expressed in various tissues, including leaf, anther and developing endosperm. FLO6 is a chloroplast and amyloplast-localized protein that is able to bind to starch by its carbohydrate-binding module 48 (CBM48) domain. Interestingly, we found that FLO6 interacted with starch synthase IVb (SSIVb) and granule-bound starch synthase (GBSSI and GBSSII). Together, our results suggested that FLO6 plays a critical role in starch synthesis through cooperating with several starch synthesis enzymes throughout plant growth and development.
Similar content being viewed by others
References
Abt MR, Pfister B, Sharma M, Eicke S, Bürgy L, Neale I, Seung D, Zeeman SC (2020) STARCH SYNTHASE 5, a noncanonical starch synthase-like protein, promotes starch granule initiation in Arabidopsis. Plant Cell 32:2543–2565. https://doi.org/10.1105/tpc.19.00946
Bull SE, Seung D, Chanez C, Mehta D, Kuon JE, Truernit E, Hochmuth A, Zurkirchen I, Zeeman SC, Gruissem W, Vanderschuren H (2018) Accelerated ex situ breeding of GBSS- and PTST1-edited cassava for modified starch. Sci Adv 4:eaat6086. https://doi.org/10.1126/sciadv.aat6086
Gentry MS, Dowen RH, Worby CA, Mattoo S, Ecker JR, Dixon JE (2007) The phosphatase laforin crosses evolutionary boundaries and links carbohydrate metabolism to neuronal disease. J Cell Biol 178:477–488. https://doi.org/10.1083/jcb.200704094
Guillen D, Sanchez S, Rodriguez-Sanoja R (2010) Carbohydrate-binding domains: multiplicity of biological roles. Appl Microbiol Biot 85:1241–1249. https://doi.org/10.1007/s00253-009-2331-y
Han MJ, Jung KH, Yi G, An G (2011) Rice importin β1 gene affects pollen tube elongation. Mol Cells 31:523–530. https://doi.org/10.1007/s10059-011-2321-7
Hannah LC, James M (2008) The complexities of starch biosynthesis in cereal endosperms. Curr Opin Biotech 19:160–165. https://doi.org/10.1016/j.copbio.2008.02.013
Hirose T, Terao T (2004) A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.). Planta 220:9–16. https://doi.org/10.1007/s00425-004-1314-6
Hu TT, Tian YL, Zhu JP, Wang YL, Jing RN, Lei J, Sun YL, Yu YF, Li JF, Chen XL, Zhu XP, Hao YY, Liu LL, Wang YH, Wan JM (2018) OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice. Plant Cell Rep 37:1667–1679. https://doi.org/10.1007/s00299-018-2338-x
Janecek S, Svensson B, MacGregor EA (2011) Structural and evolutionary aspects of two families of non-catalytic domains present in starch and glycogen binding proteins from microbes, plants and animals. Enzyme Microb Tech 49:429–440. https://doi.org/10.1016/j.enzmictec.2011.07.002
Janecek S, Marecek F, MacGregor EA, Svensson B (2019) Starch-binding domains as CBM families–history, occurrence, structure, function and evolution. Biotechnol Adv 37:107451. https://doi.org/10.1016/j.biotechadv.2019.107451
Kerk D, Conley TR, Rodriguez FA, Tran HT, Nimick M, Muench DG, Moorhead GB (2006) A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccha ride starch. Plant J 46:400–413. https://doi.org/10.1111/j.1365-313X.2006.02704.x
Kubo A, Fujita N, Harada K, Matsuda T, Satoh H, Nakamura Y (1999) The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol 121:399–409. https://doi.org/10.1117/12.920380
Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G (2007) Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.). Plant Mol Biol 65:531–546. https://doi.org/10.1007/s11103-007-9153-z
Lee SK, Eom JS, Hwang SK, Shin D, An G, Okita TW, Jeon JS (2016) Plastidic phosphoglucomutase and ADP-glucose pyrophosphorylase mutants impair starch synthesis in rice pollen grains and cause male sterility. J Exp Bot 67:5557–5569. https://doi.org/10.1093/jxb/erw324
Li N, Zhang DS, Liu HS, Yin CS, Li XX, Liang WQ, Yuan Z, Xu B, Chu HW, Wang J, Wen TQ, Huang H, Luo D, Ma H, Zhang DB (2006) The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development. Plant Cell 18:2999–3014. https://doi.org/10.1105/tpc.106.044107
Lin LS, Zhang L, Cai XL, Liu QQ, Zhang CQ, Wei CX (2018) The relationship between enzyme hydrolysis and the components of rice starches with the same genetic background and amylopectin structure but different amylose contents. Food Hydrocolloid 84:406–413. https://doi.org/10.1016/j.foodhyd.2018.06.029
Long WH, Dong BN, Wang YH, Pan PY, Wang YL, Liu LL, Chen XL, Liu X, Liu SJ, Tian YL, Chen LM, Wan JM (2017) FLOURY ENDOSPERM8, encoding the UDP-glucose pyrophosphorylase 1, affects the synthesis and structure of starch in rice endosperm. J Plant Biol 60:513–522. https://doi.org/10.1007/s12374-017-0066-3
Man JM, Lin LS, Wang ZF, Wang YP, Liu QQ, Wei CX (2014) Different structures of heterogeneous starch granules from high-amylose rice. J Agr Food Chem 62:11254–11263. https://doi.org/10.1021/jf503999r
Matsushima R, Maekawa M, Fujita N, Sakamoto W (2010) A rapid, direct observation method to isolate mutants with defects in starch grain morphology in rice. Plant Cell Physiol 51:728–741. https://doi.org/10.1093/pcp/pcq040
Matsushima R, Maekawa M, Kusano M, Kondo H, Fujita N, Kawagoe Y, Sakamoto W (2014) Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm. Plant Physiol 164:623–636. https://doi.org/10.1104/pp.113.229591
Matsushima R, Maekawa M, Kusano M, Tomita K, Kondo H, Nishimura H, Crofts N, Fujita N, Sakamoto W (2016) Amyloplast membrane protein SUBSTANDARD STARCH GRAIN6 controls starch grain size in rice endosperm. Plant Physiol 170:1445–1459. https://doi.org/10.1104/pp.15.01811
Mu H, Ke JH, Liu W, Zhuang CX, Yip WK (2009) UDP-glucose pyrophosphorylase2 (OsUgp2), a pollen-preferential gene in rice, plays a critical role in starch accumulation during pollen maturation. Chinese Sci Bull 54:234–243. https://doi.org/10.1007/s11434-008-0568-y
Nakamura Y (2002) Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: Rice endosperm as a model tissue. Plant Cell Physiol 43:718–725. https://doi.org/10.1093/pcp/pcf091
Nishi A, Nakamura Y, Tanaka N, Satoh H (2001) Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm. Plant Physiol 127:459–472. https://doi.org/10.1104/pp.010127
Ohdan T, Francisco PB Jr, Sawada T, Hirose T, Terao T, Satoh H, Nakamura Y (2005) Expression profiling of genes involved in starch synthesis in sink and source organs of rice. J Exp Bot 56:3229–3244. https://doi.org/10.1093/jxb/eri292
Peng C, Wang YH, Liu F, Ren YL, Zhou KN, Lv J, Zheng M, Zhao SL, Zhang L, Wang CM, Jiang L, Zhang X, Guo XP, Bao YQ, Wan JM (2014) FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm. Plant J 77:917–930. https://doi.org/10.1111/tpj.12444
Sakamoto W, Miyagishima SY, Jarvis P (2008) Chloroplast biogenesis: control of plastid development, protein import, division and inheritance. Arabidopsis Book 6:e0110. https://doi.org/10.1199/tab.0110
Seung D, Soyk S, Coiro M, Maier BA, Eicke S, Zeeman SC (2015) PROTEIN TARGETING TO STARCH is required for localising GRANULE-BOUND STARCH SYNTHASE to starch granules and for normal amylose synthesis in Arabidopsis. Plos Biol 13:e1002080. https://doi.org/10.1371/journal.pbio.1002080
Seung D, Boudet J, Monroe J, Schreier TB, David LC, Abt M, Lu KJ, Zanella M, Zeeman SC (2017) Homologs of PROTEIN TARGETING TO STARCH control starch granule initiation in Arabidopsis leaves. Plant Cell 29:1657–1677. https://doi.org/10.1105/tpc.17.00222
Seung D, Schreier T, Bürgy L, Eicke S, Samuel C, Zeeman SC (2018) Two pastidial coiled-coil proteins are essential for normal starch granule initiation in Arabidopsis. Plant Cell 30:1523–1542. https://doi.org/10.1105/tpc.18.00219
She KC, Kusano H, Koizumi K, Yamakawa H, Hakata M, Imamura T, Fukuda M, Naito N, Tsurumaki T, Yaeshima M, Tsuge T, Matsumoto K, Kudoh M, Itoh E, Kikuchi S, Kishimoto N, Yazaki J, Ando T, Yano M, Aoyama T, Sasaki T, Satoh H, Shimada H (2010) A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality. Plant Cell 22:3280–3294. https://doi.org/10.1105/tpc.109.070821
Stitt M, Zeeman SC (2012) Starch turnover: pathways, regulation and role in growth. Curr Opin Plant Biol 15:282–292. https://doi.org/10.1016/j.pbi.2012.03.016
Takemoto Y, Coughlan SJ, Okita TW, Satoh H, Ogawa M, Kumamaru T (2002) The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase. Plant Physiol 128:1212–1222. https://doi.org/10.1104/pp.010624
Teng X, Zhong MS, Zhu XP, Wang CM, Ren YL, Wang YL, Zhang H, Jiang L, Wang D, Hao YY, Wu MM, Zhu JP, Zhang X, Guo XP, Wang YH, Wan JM (2019) FLOURY ENDOSPERM16 encoding a NAD-dependent cytosolic malate dehydrogenase plays an important role in starch synthesis and seed development in rice. Plant Biotechnol J 17:1914–1927. https://doi.org/10.1111/pbi.13108
Tian ZX, Qian Q, Liu QQ, Yan MX, Liu XF, Yan CJ, Liu GF, Gao ZY, Tang SZ, Zeng DL, Wang YH, Yu JM, Gu MH, Li JY (2009) Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci USA 106:21760–21765. https://doi.org/10.1073/pnas.0912396106
Toyosawa Y, Kawagoe Y, Matsushima R, Crofts N, Fujita N (2016) Deficiency of starch synthase IIIa and IVb alters starch granule morphology from polyhedral to spherical in rice endosperm. Plant Physiol 170:1255–1270. https://doi.org/10.1104/pp.15.01232
Waadt R, Kudla J (2008) In planta visualization of protein interactions using bimolecular fluorescence complementation (BiFC). CSH Protoc 4:t4995. https://doi.org/10.1101/pdb.prot4995
Wanchana S, Toojinda T, Tragoonrung S, Vanavichit A (2003) Duplicated coding sequence in the waxy allele of tropical glutinous rice (Oryza sativa L.). Plant Sci 165:1193–1199. https://doi.org/10.1016/S0168-9452(03)00326-1
Wang J, Hu P, Lin LS, Chen ZC, Liu QQ, Wei CX (2018) Gradually decreasing starch branching enzyme expression is responsible for the formation of heterogeneous starch granules. Plant Physiol 176:582–595. https://doi.org/10.1104/pp.17.01013
Wang W, Wei XJ, Jiao GA, Chen WQ, Wu YW, Sheng ZH, Hu SK, Xie LH, Wang JY, Tang SQ, Hu PS (2020) GBSS-BINDING PROTEIN, encoding a CBM48 domain-containing protein, affects rice quality and yield. J Integr Plant Biol 62:948–966. https://doi.org/10.1111/jipb.12866
Wei CX, Qin FL, Zhou WD, Chen YF, Xu B, Wang YP, Gu MH, Liu QQ (2010) Formation of semi-compound C-type starch granule in high-amylose rice developed by antisense RNA inhibition of starch-branching enzyme. J Agr Food Chem 58:11097–11104. https://doi.org/10.1021/jf1024533
Wu MM, Ren YL, Cai MH, Wang YL, Zhu SS, Zhu JP, Hao YY, Teng X, Zhu XP, Jing RN, Zhang H, Zhong MS, Wang YF, Lei CL, Zhang X, Guo XP, Cheng ZJ, Lin QB, Wang J, Jiang L, Bao YQ, Wang YH, Wan JM (2019) Rice FLOURY ENDOSPERM10 encodes a pentatricopeptide repeat protein that is essential for the trans-splicing of mitochondrial nad1 intron 1 and endosperm development. New Phytol 223:736–750. https://doi.org/10.1111/nph.15814
You XM, Zhang WW, Hu JL, Jing RN, Cai Y, Feng ZM, Kong F, Zhang J, Yan HG, Chen WW, Chen XG, Ma J, Tang XJ, Wang P, Zhu SS, Liu LL, Jiang L, Wan JM (2019) FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm. Plant Cell Rep 38:345–359. https://doi.org/10.1007/s00299-019-02370-9
Zeeman SC, Northrop F, Smith AM, Rees AT (1998) A starch-accumulating mutant of Arabidopsis thaliana deficient in a starch-hydrolysing enzyme. Plant J 15:357–365. https://doi.org/10.1046/j.1365-313X.1998.00213.x
Zhang H, Xu C, He Y, Zong J, Yang X, Si H, Sun Z, Hu J, Liang W, Zhang D (2013) Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production. Proc Natl Acad Sci USA 110:76–81. https://doi.org/10.1073/pnas.1213041110
Zhang L, Ren YL, Lu BY, Yang CY, Feng ZM, Liu Z, Chen J, Ma WW, Wang Y, Yu XW, Wang YL, Zhang WW, Wang YH, Liu SJ, Wu FQ, Zhang X, Guo XP, Bao YQ, Jiang L, Wan JM (2016) FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice. J Exp Bot 67:633–647. https://doi.org/10.1093/jxb/erv469
Zhang L, Zhao LL, Bian XF, Guo K, Zhou L, Wei CX (2018a) Characterization and comparative study of starches from seven purple sweet potatoes. Food Hydrocolloid 80:168–176. https://doi.org/10.1016/j.foodhyd.2018.02.006
Zhang L, Zhao LL, Lin LS, Zhao LX, Liu QQ, Wei CX (2018b) A novel mutation of OsPPDKB, encoding pyruvate orthophosphate dikinase, affects metabolism and structure of starch in the rice endosperm. Int J Mol Sci 19:2268. https://doi.org/10.3390/ijms19082268
Zhao LX, Pan T, Cai CH, Wang J, Wei CX (2016) Application of whole sections of mature cereal seeds to visualize the morphology of endosperm cell and starch and the distribution of storage protein. J Cereal Sci 71:19–27. https://doi.org/10.1016/j.jcs.2016.07.010
Zhong MS, Liu X, Liu F, Ren YL, Wang YL, Zhu JP, Teng X, Duan EC, Wang F, Zhang H, Wu MM, Hao YY, Zhu XP, Jing RN, Guo XP, Jiang L, Wang YH, Wan JM (2019a) FLOURY ENDOSPERM12 encoding alanine aminotransferase 1 regulates carbon and nitrogen metabolism in rice. J Plant Biol 62:61–73. https://doi.org/10.1007/s12374-018-0288-z
Zhong YX, Blennow A, Kofoed-Enevoldsen O, Jiang D, Hebelstrup KH (2019b) PROTEIN TARGETING TO STARCH 1 is essential for starchy endosperm development in barley. J Exp Bot 70:485–496. https://doi.org/10.1093/jxb/ery398
Acknowledgements
This study was financially supported by Grants from the National Natural Science Foundation of China (31901427), the Talent Project of Yangzhou University, and the Priority Academic Program Development of Jiangsu Higher Education Institutions. We are grateful to Prof. Xiuling Cai (Yangzhou Univeristy) for kindly providing the antibody of ISA1 and Prof. Xiangjin Wei (China National Rice Research Institute) for providing the BiFC plasmids.
Author information
Authors and Affiliations
Contributions
LZ (Long Zhang) and CW designed this research. LZ (Long Zhang), LZ (Linglong Zhao), NL and JZ carried out the experiments. CW, LZ (Long Zhang), LZ (Linglong Zhao), and JZ analyzed the results. JQ helped with the experiments. LZ (Long Zhang) wrote and CW revised the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Zhang, L., Li, N., Zhang, J. et al. The CBM48 domain-containing protein FLO6 regulates starch synthesis by interacting with SSIVb and GBSS in rice. Plant Mol Biol 108, 343–361 (2022). https://doi.org/10.1007/s11103-021-01178-0
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11103-021-01178-0