Abstract
Discovery of a novel bacteriocin is always an event in sciences, since cultivation of most bacterial species is a general problem in microbiology. This statement is reflected by the fact that number of bacteriocins is smaller for tenfold comparing to known antimicrobial peptides. We cultivated Enterococcus faecium on simplified medium to reduce amount of purification steps. This approach allows to purify the novel heavy weight bacteriocin produced by E. faecium ICIS 7. The novelty of this bacteriocin, named enterocin-7, was confirmed by N-terminal sequencing and by comparing the structural-functional properties with available data. Purified enterocin-7 is characterized by a sequence of amino acid residues having no homology in UniProt/SwissProt/TrEMBL databases: NH2 - Asp - Ala - His - Leu - Ser - Glu - Val - Ala - Glu - Arg - Phe - Glu - Asp - Leu - Gly. Isolated thermostable protein has a molecular mass of 65 kDa, which allows it to be classified into class III in bacteriocin classification schemes. Enterocin-7 displayed a broad spectrum of activity against some Gram-positive and Gram-negative microorganisms. Fluorescent microscopy and spectroscopy showed the permeabilizing mechanism of the action of enterocin-7, which is realized within a few minutes.
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References
Riley MA, Wertz JE (2002) Bacteriocins: evolution, ecology, and application. Annu Rev Microbiol 56(1):117–137. https://doi.org/10.1146/annurev.micro.56.012302.161024
Wang G, Li X, Wang Z (2016) APD3: the antimicrobial peptide database as a tool for research and education. Nucleic Acids Res 44(D1):D1087–D1093. https://doi.org/10.1093/nar/gkv1278
Epstein SS (2009) General model of microbial uncultivability. In: Epstein SS (ed) Uncultivated microorganisms. Springer, Heidelberg, Germany, pp 131–159
Pingitore VE, Salvucci E, Sesma F, Nader-Macías ME (2007) Different strategies for purification of antimicrobial peptides from lactic acid bacteria (LAB). Communicating current research and educational topics and trends in applied microbiology a. Méndez-Vilas(Ed). Formatex, 557-568
Carson DA, Barkema HW, Naushad S, De Buck J (2017) Bacteriocins of non-aureus staphylococci isolated from bovine milk. Appl Environ Microbiol 83(17):e01015–e01017. https://doi.org/10.1128/AEM.01015-17
Sandiford SK (2017) Genome database mining for the discovery of novel lantibiotics. Expert Opin Drug Discov 12(5):489–495. https://doi.org/10.1080/17460441.2017.1303475
Chikindas ML, Weeks R, Drider D, Chistyakov VA, Dicks LM (2018) Functions and emerging applications of bacteriocins. Curr Opin Biotechnol 49:23–28. https://doi.org/10.1016/j.copbio.2017.07.011
Kaškonienė V, Stankevičius M, Bimbiraitė-Survilienė K, Naujokaitytė G, Šernienė L, Mulkytė K, Malakauskas M, Maruška A (2017) Current state of purification, isolation and analysis of bacteriocins produced by lactic acid bacteria. Appl Microbiol Biotechnol 101(4):1323–1335. https://doi.org/10.1007/s00253-017-8088-9
Alvarez-Sieiro P, Montalbán-López M, Mu D, Kuipers OP (2016) Bacteriocins of lactic acid bacteria: extending the family. Appl Microbiol Biotechnol 100(7):2939–2951. https://doi.org/10.1007/s00253-016-7343-9
Yamamoto Y, Togawa Y, Shimosaka M, Okazaki M (2003) Purification and characterization of a novel bacteriocin produced by Enterococcus faecalis strain RJ-11. Appl Environ Microbiol 69(10):5746–5753. https://doi.org/10.1128/AEM.69.10.5546-5553.2003
Vasilchenko AS, Rogozhin EA, Valyshev AV (2017) Purification of a novel bacteriocin-like inhibitory substance produced by Enterococcus faecium ICIS 8 and characterization of its mode of action. Microb Drug Resist 23(4):447–456. https://doi.org/10.1089/mdr.2016.0069
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227(5259):680–685. https://doi.org/10.1038/227680a0
Gupta A, Tiwari SK, Netrebov V, Chikindas ML (2016) Biochemical properties and mechanism of action of enterocin LD3 purified from Enterococcus hirae LD3. Probiotics Antimicrob Proteins 8(3):161–169. https://doi.org/10.1007/s12602-016-9217-y
Bell SC, Grundy WE (1968) Preparation of agar wells for antibiotic assay. Appl Microbiol 16(10):1611–1612
Wiegand I, Hilpert K, Hancock REW (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc 3(2):163–175. https://doi.org/10.1038/nprot.2007.521
Vasilchenko AS, Vasilchenko AV, Pashkova TM, Smirnova MP, Kolodkin NI, Manukhov IV, Zavilgelsky GB, Sizova EA, Kartashova OL, Simbirtsev AS, Rogozhin EA, Duskaev GK, Sycheva MV (2017) Antimicrobial activity of the indolicidin-derived novel synthetic peptide In-58. J Pept Sci 23(12):855–863. https://doi.org/10.1002/psc.3049
Fisher K, Phillips C (2009) The ecology, epidemiology and virulence of Enterococcus. Microbiology 155(6):1749–1757. https://doi.org/10.1099/mic.0.026385-0
Kommineni S, Bretl DJ, Lam V, Chakraborty R, Hayward M, Simpson P, Cao Y, Bousounis P, Kristich CJ, Salzman NH (2015) Bacteriocin production augments niche competition by enterococci in the mammalian GI tract. Nature 526(7575):719–722. https://doi.org/10.1038/nature15524
Garsa AK, Kumariya R, Sood SK, Kumar A, Kapila S (2014) Bacteriocin Production and Different Strategies for Their Recovery and Purification. Probiotics Antimicrob Proteins 6(1):47–58.
Khan H, Flint SH, Yu PL (2013) Development of a chemically defined medium for the production of enterolysin A from Enterococcus faecalis B9510. J Appl Microbiol 114(4):1092–1102. https://doi.org/10.1111/jam.12115
Liu W, Zhang L, Yi H (2017) Development of a chemically defined medium for better yield and purification of enterocin Y31 from Enterococcus faecium Y31. Journal of Food Quality vol. 2017, Article ID 9017452, 8 pages, 2017. doi:https://doi.org/10.1155/2017/9017452
Tomita H, Kamei E, Ike Y (2008) Cloning and genetic analyses of the bacteriocin 41 determinant encoded on the Enterococcus faecalis pheromone-responsive conjugative plasmid pYI14: a novel bacteriocin complemented by two extracellular components (lysin and activator). J Bacteriol 190(6):2075–2085. https://doi.org/10.1128/JB.01056-07
Nes IF, Diep DB, Ike Y (2014) Enterococcal bacteriocins and antimicrobial proteins that contribute to niche control, In Enterococci: from commensals to Leading Causes of Drug Resistant Infection Boston: Massachusetts Eye and Ear Infirmary
Nilsen T, Nes IF, Holo H (2003) Enterolysin A, a cell wall-degrading bacteriocin from Enterococcus faecalis LMG 2333. Appl Environ Microbiol 69(5):2975–2984. https://doi.org/10.1128/AEM.69.5.2975-2984.2003
Joerger MC, Klaenhammer TR (1986) Characterization and purification of helveticin J and evidence for a chromosomally determined bacteriocin produced by Lactobacillus helveticus 481. J Bacteriol 167(2):439–446. https://doi.org/10.1128/jb.167.2.439-446.1986
Beukes M, Bierbaum G, Sahl H-G, Hastings JW (2000) Purification and partial characterization of a murein hydrolase, millericin B, produced by Streptococcus milleri NMSCC 061. Appl Environ Microbiol 66(1):23–28. https://doi.org/10.1128/AEM.66.1.23-28.2000
Simmonds RS, Naidoo J, Jones CL, Tagg JR (1995) The streptococcal bacteriocin-like inhibitory substance, zoocin A, reduces the proportion of Streptococcus mutans in an artificial plaque. Microb Ecol Health Dis 8(6):281–292. https://doi.org/10.3109/08910609509140107
Schindler CA, Schuhardt VT (1964) Lysostaphin: a new bacteriolytic agent for the staphylococcus. Proc Natl Acad Sci U S A 51(3):414–421. https://doi.org/10.1073/pnas.51.3.414
Booth MC, Bogie CP, Sahl HG, Siezen RJ, Hatter KL, Gilmore MS (1996) Structural analysis and proteolytic activation of Enterococcus faecalis cytolysin, a novel lantibiotic. Mol Microbiol 21(6):1175–1184. https://doi.org/10.1046/j.1365-2958.1996.831449.x
Gálvez A, Maqueda M, Valdivia E, Quesada A, Montoya E (1986) Characterization and partial purification of a broad spectrum antibiotic AS-48 produced by Streptococcus faecalis. Can J Microbiol 32(10):765–771. https://doi.org/10.1139/m86-141
Franz CM, Grube A, Herrmann A, Abriouel H, Stärke J, Lombardi A, Tauscher B, Holzapfel WH (2002) Biochemical and genetic characterization of the two-peptide bacteriocin enterocin 1071 produced by Enterococcus faecalis FAIR-E 309. Appl Environ Microbiol 68(5):2550–2554. https://doi.org/10.1128/AEM.68.5.2550-2554.2002
Wiedemann I, Böttiger T, Bonelli RR, Wiese A, Hagge SO, Gutsmann T, Seydel U, Deegan L, Hill C, Ross P, Sahl HG (2006) The mode of action of the lantibiotic lacticin 3147- a complex mechanism involving specific interaction of two peptides and the cell wall precursor lipid II. Mol Microbiol 61(2):285–296. https://doi.org/10.1111/j.1365-2958.2006.05223.x
Van Tyne D, Martin MJ, Gilmore MS (2013) Structure, function, and biology of the Enterococcus faecalis cytolysin. Toxins 5(5):895–911. https://doi.org/10.3390/toxins5050895
Kurushima J, Nakane D, Nishizaka T, Tomita H (2015) Bacteriocin protein BacL 1 of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala 2-cross-bridged peptidoglycan. J Bacteriol 197(2):286–295. https://doi.org/10.1128/JB.02203-14
Simmonds RS, Pearson L, Kennedy RC, Tagg JR (1996) Mode of action of a lysostaphin-like bacteriolytic agent produced by Streptococcus zooepidemicus 4881. Appl Environ Microbiol 62(12):4536–4541
Funding
This work was partially supported by the Program of fundamental research of Ural branch of RAS, project No. 15-4-4-28 “Analysis of the resistom, its phenotypic manifestations and QS-systems of bacterial populations in order to develop a new methods for overcoming the antibiotic resistance of microorganisms.”
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Vasilchenko, A.S., Vasilchenko, A., Valyshev, A. et al. A Novel High-Molecular-Mass Bacteriocin Produced by Enterococcus faecium: Biochemical Features and Mode of Action. Probiotics & Antimicro. Prot. 10, 427–434 (2018). https://doi.org/10.1007/s12602-018-9392-0
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DOI: https://doi.org/10.1007/s12602-018-9392-0