Articles

1. Enhanced Spatial Fuzzy C-Means Algorithm for Brain Tissue Segmentation in T1 Images

   • Bahram Jafrasteh
   • Manuel Lubián-Gutiérrez
   • Isabel Benavente-Fernández

   Research Open access 24 April 2024

   

2. Growth-Associated Protein 43 and Tensor-Based Morphometry Indices in Mild Cognitive Impairment

   • Homa Seyedmirzaei
   • Amirhossein Salmannezhad
   • Sara Shaki Baher

   Research 17 April 2024

   

3. Gradients of Brain Organization: Smooth Sailing from Methods Development to User Community

   • Jessica Royer
   • Casey Paquola
   • Boris C. Bernhardt

   Review 03 April 2024

   

4. An Automated Tool to Classify and Transform Unstructured MRI Data into BIDS Datasets

   • Alexander Bartnik
   • Sujal Singh
   • Michael G. Dwyer

   Research 26 March 2024

   

5. DeepN4: Learning N4ITK Bias Field Correction for T1-weighted Images

   • Praitayini Kanakaraj
   • Tianyuan Yao
   • Daniel Moyer

   Research 25 March 2024 Pages: 193 - 205

   

6. Updates to the Melbourne Children’s Regional Infant Brain Software Package (M-CRIB-S)

   • Chris L. Adamson
   • Bonnie Alexander
   • Deanne K. Thompson

   Research Open access 16 March 2024 Pages: 207 - 223

   

7. MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline

   • Lanya T. Cai
   • Joseph Moon
   • the TRACK-TBI Investigators

   Research 06 March 2024 Pages: 177 - 191

   

8. Decentralized Mixed Effects Modeling in COINSTAC

   • Sunitha Basodi
   • Rajikha Raja
   • Vince D. Calhoun

   Research 01 March 2024 Pages: 163 - 175

   

9. Visual Prompting Based Incremental Learning for Semantic Segmentation of Multiplex Immuno-Flourescence Microscopy Imagery

   • Ryan Faulkenberry
   • Saurabh Prasad
   • Badrinath Roysam

   Research 23 February 2024 Pages: 147 - 162

   

10. InSpectro-Gadget: A Tool for Estimating Neurotransmitter and Neuromodulator Receptor Distributions for MRS Voxels

    • Elizabeth McManus
    • Nils Muhlert
    • Niall W. Duncan

    Research 22 February 2024 Pages: 135 - 145

    

11. Age Prediction Using Resting-State Functional MRI

    • Jose Ramon Chang
    • Zai-Fu Yao
    • Torbjörn E. M. Nordling

    Research 11 February 2024 Pages: 119 - 134

    

12. Network Representation of fMRI Data Using Visibility Graphs: The Impact of Motion and Test-Retest Reliability

    • Govinda R. Poudel
    • Prabin Sharma
    • Ester Cerin

    Research Open access 09 February 2024 Pages: 107 - 118

    

13. A Deep Learning-Based Ensemble Method for Early Diagnosis of Alzheimer’s Disease using MRI Images

    • Sina Fathi
    • Ali Ahmadi
    • for the Alzheimer’s Disease Neuroimaging Initiative

    Research Open access 02 December 2023 Pages: 89 - 105

    

14. Preserving Derivative Information while Transforming Neuronal Curves

    • Thomas L. Athey
    • Daniel J. Tward
    • Michael I. Miller

    Research Open access 30 November 2023 Pages: 63 - 74

    

15. High-Density Exploration of Activity States in a Multi-Area Brain Model

    • David Aquilué-Llorens
    • Jennifer S. Goldman
    • Alain Destexhe

    Research Open access 20 November 2023 Pages: 75 - 87

    

16. Editorial: On the Economics of Neuroscientific Data Sharing

    • John Darrell Van Horn

    Editorial 15 November 2023 Pages: 1 - 4

17. Topological Data Analysis Captures Task-Driven fMRI Profiles in Individual Participants: A Classification Pipeline Based on Persistence

    • Michael J. Catanzaro
    • Sam Rizzo
    • Vaibhav A. Diwadkar

    Research 04 November 2023 Pages: 45 - 62

    

18. Improving the Eligibility of Task-Based fMRI Studies for Meta-Analysis: A Review and Reporting Recommendations

    • Freya Acar
    • Camille Maumet
    • Beatrijs Moerkerke

    Review 04 November 2023 Pages: 5 - 22

    

19. Analyzing Thalamocortical Tract-Tracing Experiments in a Common Reference Space

    • Nestor Timonidis
    • Mario Rubio-Teves
    • Francisco Clascá

    Research Open access 21 October 2023 Pages: 23 - 43

    

20. Correction to: Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester

    • Tommaso Ciceri
    • Letizia Squarcina
    • Denis Peruzzo

    Correction Open access 19 September 2023 Pages: 669 - 669

    

21. Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data

    • Oswaldo Artiles
    • Zeina Al Masry
    • Fahad Saeed

    Research 15 August 2023 Pages: 651 - 668

    

22. Editorial: Is Now the Time for Foundational Theory of Brain Connectivity?

    • John Darrell Van Horn
    • Zachary Jacokes
    • Teague Henry

    Editorial 14 August 2023 Pages: 633 - 635

23. Auto-Segmentation and Classification of Glioma Tumors with the Goals of Treatment Response Assessment Using Deep Learning Based on Magnetic Resonance Imaging

    • Zahra Papi
    • Sina Fathi
    • Iraj Abedi

    Research 17 July 2023 Pages: 641 - 650

    

24. BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes

    • Thomas L. Athey
    • Matthew A. Wright
    • Joshua T. Vogelstein

    Commentary Open access 03 July 2023 Pages: 637 - 639

    

25. Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space

    • Maryam Sadeghi
    • Arnau Ramos-Prats
    • Georg Goebel

    Research Open access 26 June 2023 Pages: 615 - 630

    

26. Big Brain Data Initiatives in Universiti Sains Malaysia: Data Stewardship to Data Repository and Data Sharing

    • Nurfaten Hamzah
    • Nurul Hashimah Ahamed Hassain Malim
    • Zamzuri Idris

    Research 21 June 2023 Pages: 589 - 600

    

27. Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective

    • Nayereh Ghazi
    • Mohammad Hadi Aarabi
    • Hamid Soltanian-Zadeh

    Review 17 June 2023 Pages: 517 - 548

    

28. Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data

    • Rosemary He
    • Daniel Tward
    • Alzheimer’s Disease Neuroimaging Initiative

    Research Open access 14 June 2023 Pages: 601 - 614

    

29. Single Neuron Modeling Identifies Potassium Channel Modulation as Potential Target for Repetitive Head Impacts

    • Daniel P. Chapman
    • Stefano Vicini
    • Rebekah Evans

    Research 09 June 2023 Pages: 501 - 516

    

30. Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester

    • Tommaso Ciceri
    • Letizia Squarcina
    • Denis Peruzzo

    Research Open access 07 June 2023 Pages: 549 - 563

    

31. De-Identification Technique with Facial Deformation in Head CT Images

    • Tatsuya Uchida
    • Taichi Kin
    • Nobuhito Saito

    Research Open access 25 May 2023 Pages: 575 - 587

    

32. CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations

    • Laura Keto
    • Tiina Manninen

    Research Open access 03 May 2023 Pages: 483 - 500

    

33. Correction to: Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED)

    • Kay Robbins
    • Dung Truong
    • Scott Makeig

    Correction Open access 11 April 2023 Pages: 631 - 631

34. A Method for In-Vivo Mapping of Axonal Diameter Distributions in the Human Brain Using Diffusion-Based Axonal Spectrum Imaging (AxSI)

    • Hila Gast
    • Assaf Horowitz
    • Yaniv Assaf

    Research Open access 10 April 2023 Pages: 469 - 482

    

35. Funcmasker-flex: An Automated BIDS-App for Brain Segmentation of Human Fetal Functional MRI data

    • Emily S. Nichols
    • Susana Correa
    • Ali R. Khan

    Research 31 March 2023 Pages: 565 - 573

    

36. A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation

    • Tommaso Costa
    • Donato Liloia
    • Jordi Manuello

    Research Open access 28 March 2023 Pages: 365 - 374

    

37. Analysis of Network Models with Neuron-Astrocyte Interactions

    • Tiina Manninen
    • Jugoslava Aćimović
    • Marja-Leena Linne

    Research Open access 23 March 2023 Pages: 375 - 406

    

38. ABCD_Harmonizer: An Open-source Tool for Mapping and Controlling for Scanner Induced Variance in the Adolescent Brain Cognitive Development Study

    • Jonathan A. Dudley
    • Thomas C. Maloney
    • Leanne Tamm

    Research 20 March 2023 Pages: 323 - 337

    

39. Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives

    • T. Illakiya
    • R. Karthik

    Review 08 March 2023 Pages: 339 - 364

    

40. Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System

    • Johanna Perens
    • Casper Gravesen Salinas
    • Tim B. Dyrby

    Research 21 February 2023 Pages: 269 - 286

    

41. On the Long-term Archiving of Research Data

    • Cyril Pernet
    • Claus Svarer
    • Russell A. Poldrack

    Editorial 01 February 2023 Pages: 243 - 246

    

42. Correction to: Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data

    • Irina Belyaeva
    • Ben Gabrielson
    • Tülay Adali

    Correction 17 January 2023 Pages: 143 - 143

43. NiftyPAD - Novel Python Package for Quantitative Analysis of Dynamic PET Data

    • Jieqing Jiao
    • Fiona Heeman
    • Frederik Barkhof

    Research Open access 09 January 2023 Pages: 457 - 468

    

44. IABC: A Toolbox for Intelligent Analysis of Brain Connectivity

    • Yuhui Du
    • Yanshu Kong
    • Xingyu He

    Research 07 January 2023 Pages: 303 - 321

    

45. Correction to: Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition

    • Aybüke Erol
    • Chagajeg Soloukey
    • Borbála Hunyadi

    Correction Open access 26 December 2022 Pages: 267 - 267

    

46. Editorial: What the New White House Rules on Equitable Access Mean for the Neurosciences

    • John Darrell Van Horn

    Editorial 25 December 2022 Pages: 1 - 4

47. Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem

    • Stephanie O. M. Dyke
    • Kathleen Connor
    • Jason Karamchandani

    OriginalPaper Open access 15 December 2022 Pages: 89 - 100

    

48. Co-alteration Network Architecture of Major Depressive Disorder: A Multi-modal Neuroimaging Assessment of Large-scale Disease Effects

    • Jodie P. Gray
    • Jordi Manuello
    • Peter T. Fox

    Research 05 December 2022 Pages: 443 - 455

    

49. Chronic Mild Traumatic Brain Injury: Aberrant Static and Dynamic Connectomic Features Identified Through Machine Learning Model Fusion

    • Nicholas J. Simos
    • Katina Manolitsi
    • Efrosini Papadaki

    Research Open access 02 December 2022 Pages: 427 - 442

    

50. Scalable Query Answering Under Uncertainty to Neuroscientific Ontological Knowledge: The NeuroLang Approach

    • Gaston E. Zanitti
    • Yamil Soto
    • Demian Wassermann

    Original Article 29 November 2022 Pages: 407 - 425