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Genomics Approaches to Mining Barley Germplasm Collections

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The Barley Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

Barley has been diversified during the long process of evolution. The genetic diversity that was lost during domestication and crop improvement can be introduced from various collections with extant wild relatives of barley being a particularly rich source. Thousands of diverse accessions of cultivated and wild barley have been collected, preserved in ex situ collections, phenotyped for various traits, genotyped with molecular markers, and catalogued in databases. Such attributes make these collections readily accessible for germplasm mining. High-throughput sequencing methods for assessing intraspecific diversity have become available recently through the implementation of exome sequencing and genotype-by-sequencing in barley. These methods enable the systematic collection of molecular passport data of entire collections to inform genebank management decisions. They can also guide the selection of core collections for further in-depth studies linking phenotype and genotype. Finally, the joint analysis of genetic data and information on collection sites of accession can give insights about the population structure, dispersal, and evolutionary history of the crop.

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Authors and Affiliations

  1. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466, Seeland, Germany

    Martin Mascher

  2. Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan

    Kazuhiro Sato

  3. Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA

    Brian Steffenson

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  1. Martin Mascher
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  2. Kazuhiro Sato
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  3. Brian Steffenson
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Correspondence to Brian Steffenson .

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Editors and Affiliations

  1. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Sachsen-Anhalt, Germany

    Nils Stein

  2. Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA

    Gary J. Muehlbauer

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Mascher, M., Sato, K., Steffenson, B. (2018). Genomics Approaches to Mining Barley Germplasm Collections. In: Stein, N., Muehlbauer, G. (eds) The Barley Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-92528-8_11

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