Abstract
In contrast to the traditional relational semiotics, biosemiotics decisively deviates towards dynamical aspects of signs at the evolutionary and developmental time scales. The analysis of sign dynamics requires constructivism (in a broad sense) to explain how new components such as subagents, sensors, effectors, and interpretation networks are produced by developing and evolving organisms. Semiotic networks that include signs, tools, and subagents are multilevel, and this feature supports the plasticity, robustness, and evolvability of organisms. The origin of life is described here as the emergence of simple self-constructing semiotic networks that progressively increased the diversity of their components and relations. Primitive organisms have no capacity to classify and track objects; thus, we need to admit the existence of proto-signs that directly regulate activities of agents without being associated with objects. However, object recognition and handling became possible in eukaryotic species with the development of extensive rewritable epigenetic memory as well as sensorial and effector capacities. Semiotic networks are based on sequential and recursive construction, where each step produces components (i.e., agents, scaffolds, signs, and resources) that are needed for the following steps of construction. Construction is not limited to repair and reproduction of what already exists or is unambiguously encoded, it also includes production of new components and behaviors via learning and evolution. A special case is the emergence of new levels of organization known as metasystem transition. Multilevel semiotic networks reshape the phenotype of organisms by combining a mosaic of features developed via learning and evolution of cooperating and/or conflicting subagents.
Similar content being viewed by others
Notes
However, the statement would be wrong if truth is interpreted in metaphysical terms, because meaningful sign processes are possible even without true understanding of states-of-affairs (e.g., cooking recipes do not require any knowledge of thermodynamics).
Bacteria have no real histones. However, they change DNA methylation to control their virulence and the cell cycle.
Note, that relational semiotics assumes the existence of signs even in the physical world devoid of life (Deely 1992).
Recent discovery of alcohol and sugar on the comet Lovejoy (Biver et al. 2015) is interesting, but it does not prove that primordial organisms used carbohydrates of abiotic origin as resources. It is very unlikely that life originated on a small comet. And if a comet lands on a planet, organic chemicals would immediately degrade or become diluted.
Here I do not consider products of synthetic biology because all artificial living systems were not engineered from scratch but copied from natural organisms.
References
Anderson, M., Deely, J., Krampen, M., Ransdell, J., Sebeok, T. A., & Uexküll, T. v. (1984). A semiotic perspective on the sciences: steps toward a new paradigm. Semiotica, 52(1/2), 7–47.
Armus, H. L., Montgomery, A. R., & Gurney, R. L. (2006). Discrimination learning and extinction in paramecia (P. caudatum). Psychological Reports, 98(3), 705–711.
Baldwin, M. J. (1896). A new factor in evolution. American Naturalist, 30, 441–451.
Barbieri, M. (2003). The organic codes: An introduction to semantic biology. Cambridge: Cambridge University Press.
Barbieri, M. (2008). Biosemiotics: a new understanding of life. Die Naturwissenschaften, 95(7), 577–599.
Berthoz, A. (2012). Simplexity: Simplifying priciples for a complex world (G. Weiss, Trans.). New Haven: Yale University Press.
Bickhard, M. H. (2005). Functional scaffolding and self-scaffolding. New Ideas in Psychology, 23, 166–173.
Biver, N., Bockelée-Morvan, D., Moreno, R., Crovisier, J., Colom, P., Lis, D. C., et al. (2015). Ethyl alcohol and sugar in comet C/2014 Q2 (Lovejoy). Science Advances, 1(9), e1500863.
Bright, M., & Bulgheresi, S. (2010). A complex journey: transmission of microbial symbionts. Nature Reviews Microbiology, 8(3), 218–230.
Bruni, L. E. (2008). Cellular semiotics and signal transduction. In M. Barbieri (Ed.), Introduction to biosemiotics. The new biological synthesis (pp. 365–407). Dordrecht: Springer.
Cariani, P. (1998). Towards an evolutionary semiotics: The emergence of new sign-functions in organisms and devices. In S. S. G. Van de Vijver & M. Delpos (Eds.), Evolutionary systems (pp. 359–377). Dordrecht: Kluwer.
Compain, P. (2003). Le pari de la simplexité. Le simple et le complexe en synthèse organique. L’Actualité Chimique(4-5), 129–134.
Core, A., Runckel, C., Ivers, J., Quock, C., Siapno, T., Denault, S., et al. (2012). A new threat to honey bees, the parasitic phorid fly Apocephalus borealis. PLoS One, 7(1), e29639.
Corthay, A. (2014). Does the immune system naturally protect against cancer? Frontiers in Immunology, 5, 197.
Dawkins, R. (1976). The selfish gene. Oxford: Oxford University Press.
Deely, J. (1992). Semiotics and biosemiotics: Are sign-science and life-science coextensive? In T. A. Sebeok & J. Umiker-Sebeok (Eds.), Biosemiotics. The semiotic web 1991 (pp. 45–75). New York: Mouton de Gruyter.
Dewey, J. (1998). The development of American pragmatism. In T. M. A. L. A. Hickman (Ed.), The essential Dewey (vol. 1). Bloomengton: Indiana Univ. Press.
Gardner, M. (1970). Mathematical games – the fantastic combinations of John Conway’s new solitaire game “life”. Scientific American, 223, 120–123.
Gilbert, W. (1986). Origin of life: the RNA world. Nature, 319(6055), 618.
Ginsburg, S., & Jablonka, E. (2009). Epigenetic learning in non-neural organisms. Journal of Biosciences, 34(4), 633–646.
Hennessey, T. (1979). Classical conditioning in paramecia. Animal Learning & Behavior, 7, 419–423.
Hoffmeyer, J. (1996). Signs of meaning in the universe. Bloomington: IndianaUniversity Press.
Hoffmeyer, J. (2008). Biosemiotics: An examination into the signs of life and the life of signs Scranton. PA: University of Scranton Press.
Hoffmeyer, J. (2010). Semiotics of nature. In P. Cobley (Ed.), The Routledge companion to semiotics (pp. 29–42). London: Routledge.
Hoffmeyer, J., & Emmeche, C. (1991). Code-duality and the semiotics of nature. In M. Anderson & F. Merrell (Eds.), On semiotic modeling (pp. 117–166). Berlin: Mouton de Gruyter.
Hoffmeyer, J., & Stjernfelt, F. (2016). The great chain of semiosis. investigating the steps in the evolution of semiotic competence,” Jesper Hoffmeyer and Frederik Stjernfelt. Biosemiotics, 9(1). doi: 10.1007/s12304-015-9247-y.
Ingram, W. M., Goodrich, L. M., Robey, E. A., & Eisen, M. B. (2013). Mice infected with low-virulence strains of Toxoplasma gondii lose their innate aversion to cat urine, even after extensive parasite clearance. PLoS One, 8(9), e75246.
James, W. (1954). Essays in pragmatism. New York: Hafner Pub. Co.
Kauffman, S. A. (1986). Autocatalytic sets of proteins. Journal of Theoretical Biology, 119(1), 1–24.
Kauffman, S. A. (2014). Prolegomenon to patterns in evolution. Biosystems, 123, 3–8.
Klir, G. J. (1991). Facets of systems science (Vol. 7, IFSR International Series on Systems Science and Engineering). New York, London: Springer.
Koonin, E. V., & Galperin, M. Y. (2003). Sequence - evolution - function: Computational approaches in comparative genomics. Boston: Kluwer Academic.
Kull, K. (2009). Vegetative, animal, and cultural semiosis: the semiotic threshold zones. Cognitive Semiotics, 4, 8–27.
Langton, C. G. (1984). Self-reproduction in cellular automata. Physica D, 10, 135–144.
Liu, C. H., & Matthews. (2005). Vygotsky’s philosophy: constructivism and its criticisms examined. International Education Journal, 6(3), 386–399.
Lodish, H., Berk, A., Zipursky, S. L., Matsudaira, P., & Darnell, J. (2000). Molecular cell biology (4th ed.). New York: W. H. Freeman and Co.
Maturana, H., & Varela, F. (1980). Autopoiesis and cognition: The realization of the living (Vol. 42, Boston Studies in the Philosophy of Science). Dordecht: D. Reidel Publishing Co.
Minsky, M. (1986). The society of mind. New York: Simon and Schuster.
Morris, C. W. (1964). Signification and significance: A study of the relations of signs and values. Cambridge: MIT Press.
Murchison, E. P., Wedge, D. C., Alexandrov, L. B., Fu, B., Martincorena, I., Ning, Z., et al. (2014). Transmissible dog cancer genome reveals the origin and history of an ancient cell lineage. Science, 343(6169), 437–440.
Noss, R., & Clayson, J. (2015). Reconstructing constructionism. Constructivist Foundations, 10(3), 285–288.
Peirce, C. S. (1976). The new elements of mathematics. Atlantic Highlands: Humanities Press.
Pershin, Y. V., La Fontaine, S., & Di Ventra, M. (2009). Memristive model of amoeba learning. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, 80(2 Pt 1), 021926.
Piaget, J., & Garcia, R. (1989). Psychogenesis and the history of science. New York: Columbia University Press.
Prodi, G. (1988). Material bases of signification. Semiotica, 69(3/4), 191–241.
Puigbo, P., Wolf, Y. I., & Koonin, E. V. (2013). Seeing the tree of life behind the phylogenetic forest. BMC Biology, 11, 46.
Riegler, A. (2006). Like cats and dogs: Radical constructivism and evolutionary epistemology. In J. P. V. B. N. Gontier & D. Aerts (Eds.), Evolutionary epistemology, language and culture (pp. 47–65). Dordrecht: Springer.
Rosen, R. (1991). Life itself: a comprehensive inquiry into the nature, origin, and fabrication of life. New York: Columbia University Press.
Saigusa, T., Tero, A., Nakagaki, T., & Kuramoto, Y. (2008). Amoebae anticipate periodic events. Physical Reviews Letters, 100(1), 018101.
Schlosser, G., & Wagner, G. P. (2004). Introduction: The modularity concept in developmental and evolutionary biology. In G. Schlosser & G. P. Wagner (Eds.), Modularity in development and evolution (pp. 1–11). Chicago: University of Chicago Press.
Schrödinger, E. (1940). What is life? The physical aspect of the living cell. Cambridge: Cambridge University Press.
Sharov, A. A. (1992). Biosemiotics: functional-evolutionary approach to the problem of the sense of information. In T. A. Sebeok & J. Umiker-Sebeok (Eds.), Biosemiotics. The semiotic web 1991 (pp. 345–373). New York: Mouton de Gruyter.
Sharov, A. A. (2001). Umwelt theory and pragmatism. Semiotica, 134, 211–228.
Sharov, A. A. (2009). Coenzyme autocatalytic network on the surface of oil microspheres as a model for the origin of life. [Article]. International Journal of Molecular Sciences, 10(4), 1838–1852.
Sharov, A. A. (2010). Functional information: Towards synthesis of biosemiotics and cybernetics. Entropy, 12(5), 1050–1070.
Sharov, A. A. (2013). Minimal mind. In L. Swan (Ed.), Origins of mind (pp. 343–360). Dordrecht: Springer.
Sharov, A. A. (2014). Evolutionary constraints or opportunities? Biosystems, 123, 9–18.
Sharov, A. A. (2016a). Coenzyme world model of the origin of life. Biosystems, 144, 8–17.
Sharov, A. A. (2016b). Evolution of natural agents: preservation, advance, and emergence of functional information. Biosemiotics, 8. doi: 10.1007/s12304-015-9250-3.
Sharov, A. A., & Gordon, R. (2013). Life before earth. http://arxiv.org/ftp/arxiv/papers/1304/1304.3381.pdf2013.
Sharov, A. A., & Vehkavaara, T. (2015). Protosemiosis: agency with reduced representation capacity. Biosemiotics, 8(1), 103–123.
Tobias, S., & Duffy, T. M. (2009). Constructivist instruction: Success or failure? New York: Taylor & Francis.
True, J. R. (2003). Insect melanism: the molecules matter. Trends in Ecology and Evolution, 18(12), 640–647.
Turchin, V. F. (1977). The phenomenon of science. New York: Columbia University Press.
Uexküll, J. v. (1982). The theory of meaning. Semiotica, 42(1), 25–82.
van’t Hof, A. E., & Saccheri, I. J. (2010). Industrial melanism in the peppered moth is not associated with genetic variation in canonical melanisation gene candidates. PLoS One, 5(5), e10889.
Villareal, L. P. (2009). Origin of group identity. Viruses, addiction and cooperation. New York: Springer.
von Neumann, J. (1966). Theory of self-reproducing automata. Urbana: University of Illinois Press.
Wächtershäuser, G. (1988). Before enzymes and templates: theory of surface metabolism. Microbiological Reviews, 52(4), 452–484.
Waddington, C. H. (1968). Towards a theoretical biology. Nature, 218(5141), 525–527.
Wagner, G. P. (1996). Homologues, natural kinds and the evolution of modularity. American Zoologist, 36, 36–43.
Wittkopp, P. J., True, J. R., & Carroll, S. B. (2002). Reciprocal functions of the Drosophila yellow and ebony proteins in the development and evolution of pigment patterns. Development, 129(8), 1849–1858.
Yamasaki, S., Stoecklin, G., Kedersha, N., Simarro, M., & Anderson, P. (2007). T-cell intracellular antigen-1 (TIA-1)-induced translational silencing promotes the decay of selected mRNAs. Journal of Biological Chemistry, 282(41), 30070–30077.
Acknowledgments
This paper was supported entirely by the Intramural Research Program of the National Institute on Aging (NIA/NIH), project Z01 AG000656-13. The content of the paper is not endorsed by the funding organization.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Sharov, A.A. Evolutionary Biosemiotics and Multilevel Construction Networks. Biosemiotics 9, 399–416 (2016). https://doi.org/10.1007/s12304-016-9269-0
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12304-016-9269-0