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Halomonas shantousis sp. nov., a novel biogenic amines degrading bacterium isolated from Chinese fermented fish sauce

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Abstract

A Gram-negative, aerobic, short rod-shaped and non-motile bacterium, designated SWA25T, was isolated from Chinese fermented fish sauce in Shantou, Guangdong Province, China. Strain SWA25T was moderately halophilic, formed colourless colonies and grew at 10–45 °C (optimum, 37 °C) and pH 4–9 (optimum, 6–7) in the presence of 0.5–22.5 % (w/v) NaCl (optimum, 3 %). The major cellular fatty acids (>10 %) were identified as C18:1 ω7C, C16:0, C16:1 ω7c, and C19:0 cyclo ω8c, and the predominant respiratory ubiquinone was Q-9. The genomic DNA G+C content was 61.3 ± 2.1 mol %. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SWA25T belonged to the genus Halomonas in the family Halomonadaceae. The closest relatives were Halomonas xianhensis A-1T (96.5 % 16S rRNA gene sequence similarity), H. lutea DSM 23508T (96.5 %) and H. muralis LMG 20969T (96.1 %). DNA–DNA hybridization assays showed 30.7 ± 2.6 % relatedness between strain SWA25T and H. xianhensis A-1T, and 39.4 ± 4.1 % between strain SWA25T and H. lutea DSM 23508T. On the basis of phenotypic, chemotaxonomic and phylogenetic features, strain SWA25T should be placed in the genus Halomonas as a representative of a novel species. The name Halomonas shantousis sp. nov. is proposed, with SWA25T(=CCTCC AB 2013151T = JCM 19368T) as the type strain.

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References

  • Arahal DR, Ludwig W, Schleifer KH, Ventosa A (2002) Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses. Int J Syst Evol Microbiol 52:241–249

    PubMed  CAS  Google Scholar 

  • Arahal DR, Vreeland RH, Litchfield CD, Mormile MR, Tindall BJ, Ventosa A (2007) Recommended minimal standards for describing new taxa of the family Halomonadaceae. Int J Syst Evol Microbiol 57:2436–2446

    Article  PubMed  CAS  Google Scholar 

  • Arenas M, Bañón PI, Copa-Patiño JL, Sánchez-Porro C, Ventosa A, Soliveri J (2009) Halomonas ilicicola sp. nov., a moderately halophilic bacterium isolated from a saltern. Int J Syst Evol Microbiol 59:578–582

    Article  PubMed  CAS  Google Scholar 

  • Cerny G (1978) Studies on the aminopeptidase test for the distinction of gram-negative from gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:113–122

    Article  CAS  Google Scholar 

  • Chen C, Shi R, Liu BB, Zhang YJ, Sun HZ, Li CT, Li WJ (2011) Halomonas qijiaojingensis sp. nov. and Halomonas flava sp. nov., two moderately halophilic bacteria isolated from a salt lake. Antonie Van Leeuwenhoek 100:365–373

    Article  PubMed  Google Scholar 

  • De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142

    Article  PubMed  Google Scholar 

  • García MT, Mellado E, Ostos JC, Ventosa A (2004) Halomonas organivorans sp. nov., a moderate halophile able to degrade aromatic compounds. Int J Syst Evol Microbiol 54:1723–1728

    Article  PubMed  Google Scholar 

  • Heyrman J, Balcaen A, De Vos P, Swings J (2002) Halomonas muralis sp. nov., isolated from microbial biofilms colonizing the walls and murals of the Saint-Catherine chapel (Castle Herberstein, Austria). Int J Syst Evol Microbiol 52:2049–2054

    Article  PubMed  CAS  Google Scholar 

  • Huss VA, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192

    Article  PubMed  CAS  Google Scholar 

  • Jeong SH, Lee JH, Jung JY, Lee SH, Park MS, Jeon CO (2013) Halomonas cibimaris sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Antonie Van Leeuwenhoek 103:503–512

    Article  PubMed  Google Scholar 

  • Jiang J, Pan Y, Meng L, Hu S, Zhang X, Hu B, Su T (2013) Halomonas zhaodongensis sp. nov., a slightly halophilic bacterium isolated from saline-alkaline soils in Zhaodong, China. Antonie Van Leeuwenhoek 104:685–694

    Article  PubMed  CAS  Google Scholar 

  • Jin YX, Shi LH, Kawata Y (2013) Metabolomics-based component profiling of Halomonas sp. KM-1 during different growth phases in poly(3-hydroxybutyrate) production. Bioresour Technol 140:73–79

    Article  PubMed  CAS  Google Scholar 

  • Khunt M, Pandhi N, Rana A (2013) Effect of medium and environmental parameters on lipase production from extreme halophilic isolate Halomonas salina ku-20. J Pure Appl Microbiol 7:625–630

    CAS  Google Scholar 

  • Kim KK, Jin L, Yang HC, Lee SH (2007) Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water. Int J Syst Evol Microbiol 57:675–681

    Article  PubMed  CAS  Google Scholar 

  • Kim OS, Cho YJ, Lee K, Yoon SK, Kim M, Na H, Chun J (2012) Introducing EzTaxon: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721

    Article  PubMed  CAS  Google Scholar 

  • Komagata K, Suzuki KI (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–206

    Article  CAS  Google Scholar 

  • Kshirsagar PR, Kulkarni SO, Nilegaonkar SS, Niveditha M, Kanekar PP (2013) Kinetics and model building for recovery of polyhydroxyalkanoate (PHA) from Halomonas campisalis. Sep Purif Technol 103:151–160

    Article  CAS  Google Scholar 

  • Lányi B (1988) Classical and rapid identification methods for medically important bacteria. In: Colwell RR and Grigorova R(ed) Methods in microbiology, Academic press, New York, p 1–67

  • Liu WY, Wang J, Yuan M (2011) Halomonas aidingensis sp. nov., a moderately halophilic bacterium isolated from Aiding salt lake in Xinjiang, China. Antonie Van Leeuwenhoek 99:663–670

    Article  PubMed  CAS  Google Scholar 

  • Long MR, Zhang DF, Yang XY, Zhang XM, Zhang YG, Zhang YM, Li WJ (2013) Halomonas nanhaiensis sp. nov., a halophilic bacterium isolated from a sediment sample from the South China Sea. Antonie Van Leeuwenhoek 103:997–1005

    Article  PubMed  Google Scholar 

  • Margesin R, Schinner F (2001) Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5:73–83

    Article  PubMed  CAS  Google Scholar 

  • Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208–218

    Article  CAS  Google Scholar 

  • Marmur J, Doty P (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118

    Article  PubMed  CAS  Google Scholar 

  • Mata JA, Martínez-Cánovas J, Quesada E, Béjar V (2002) A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 25:360–375

    Article  PubMed  CAS  Google Scholar 

  • Pettersson B, de Silva SK, Uhlén M, Priest FG (2000) Bacillus siralis sp. nov., a novel species from silage with a higher order structural attribute in the 16S rRNA genes. Int J Syst Evol Microbiol 50:2181–2187

    Article  PubMed  CAS  Google Scholar 

  • Poli A, Moriello VS, Esposito E, Lama L, Gambacorta A, Nicolaus B (2004) Exopolysaccharide production by a new Halomonas strain CRSS isolated from saline lake Cape Russell in Antarctica growing on complex and defined media. Biotechnol Lett 26:1635–1638

    Article  PubMed  CAS  Google Scholar 

  • Reysenbach AL, Longnecker K, Kirshtein J (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a mid-Atlantic ridge hydrothermal vent. Appl Environ Microbiol 66:3798–3806

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849

    Article  CAS  Google Scholar 

  • Stanier RY, Palleroni NJ, Doudoroff M (1966) The aerobic Pseudomonads a taxonomic study. J Gen Microbiol 43:159–271

    Article  PubMed  CAS  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Tsitko IV, Zaitsev GM, Lobanok AG, Salkinoja-Salonen MS (1999) Effect of aromatic compounds on cellular fatty acid composition of Rhodococcus opacus. Appl Environ Microbiol 65:853–855

    PubMed  CAS  PubMed Central  Google Scholar 

  • Ventosa A, Nieto JJ (1995) Biotechnological applications and potentialities of halophilic microorganisms. World J Microbiol Biotechnol 11:85–94

    Article  PubMed  CAS  Google Scholar 

  • Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic gram-negative rods. J Gen Microbiol 128:1959–1968

    Google Scholar 

  • Wang Y, Tang SK, Lou K, Mao PH, Jin X, Jiang CL, Li WJ (2008) Halomonas lutea sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 58:2065–2069

    Article  PubMed  CAS  Google Scholar 

  • Wang CY, Wu SJ, Ng CC, Tzeng WS, Shyu YT (2012) Halomonas beimenensis sp. nov., isolated from an abandoned saltern. Int J Syst Evol Microbiol 62:3013–3017

    Article  PubMed  CAS  Google Scholar 

  • Xu P, Li WJ, Tang SK, Zhang YQ, Chen GZ, Chen HH, Jiang CL (2005) Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family ‘Oxalobacteraceae’ isolated from China. Int J Syst Evol Microbiol 55:1149–1153

    Article  PubMed  CAS  Google Scholar 

  • Yoon JH, Lee KC, Kho YH, Kang KH, Kim CJ, Park YH (2002) Halomonas alimentaria sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 52:123–130

    Article  PubMed  CAS  Google Scholar 

  • Zhao B, Wang H, Mao X, Li R, Zhang YJ, Tang S, Li WJ (2012) Halomonas xianhensis sp. nov., a moderately halophilic bacterium isolated from a saline soil contaminated with crude oil. Int J Syst Evol Microbiol 62:173–178

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

The research was funded by Natural Science Foundation of China (No.31101330 and 31371731) and Program for Changjiang Scholars and Innovative Research Team in University (PCSIRT 1188).

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Correspondence to Ying Xu.

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Jiang, W., Li, C., Xu, B. et al. Halomonas shantousis sp. nov., a novel biogenic amines degrading bacterium isolated from Chinese fermented fish sauce. Antonie van Leeuwenhoek 106, 1073–1080 (2014). https://doi.org/10.1007/s10482-014-0275-4

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