Skip to main content
Log in

Authentication of swordfish (Xiphias gladius) by RT–PCR and FINS methodologies

  • Original Paper
  • Published:
European Food Research and Technology Aims and scope Submit manuscript

Abstract

In the present study, two methods for the authentication of swordfish (Xiphias gladius) were developed. The first one is based on a TaqMan probe real-time PCR technology using the cytochrome oxidase subunit I (COI), while the second one is based on the phylogenetic analysis of DNA sequences (forensically informative nucleotide sequencing, FINS) using the cytochrome b (cyt b) gene fragment. Both techniques can be applied depending on the laboratory equipment and allow the detection of fraudulent or unintentional mislabelling of this species. The developed methodologies were validated and subsequently were applied to 30 commercial samples labelled as swordfish or X. gladius in order to determinate whether the species used for their manufacturing corresponded to this species. These tools are useful to clarify questions related to the correct labelling of commercial products and to verify the correct traceability in commercial trade and for fisheries control.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  1. Nakamura I (1985) FAO species catalogue. Billfishes of the World. An annotated and illustrated catalogue of marlins, sailfishes, spearfishes and swordfishes know to date

  2. Kasapidis P, Mejuto J, Tserpes G, Antoniou A, Garcia-Cortes B, Peristeraki P, Oikonomaki K, Kotoulas G, Magoulas A (2007) Genetic structure of the swordfish (Xiphias gladius) stocks in the Atlantic using microsatellite DNA analysis. Collect Vol Sci Pap Int Comm Conserv Atlantic Tuna (ICCAT) 61:89–98

    Google Scholar 

  3. Sun CL, Su NJ, Yeh SZ (2010) Standardized catch-rates of swordfish (Xiphias gladius) for the Taiwanese Tuna Longline Fleet in the North Atlantic Ocean. Collect Vol Sci Pap ICCAT 65:264–273

    Google Scholar 

  4. EU Council Regulation (EC) No 104/2000 of 17 December 1999 on the common organisation of the markets in fishery and aquaculture products

  5. EU Commission Regulation (EC) No 2065/2001 of 22 October 2001 laying down detailed rules for the application of Council Regulation (EC) No 104/2000 as regards informing consumers about fishery and aquaculture products

  6. Espiñeira M, Vieites JM, Santaclara FJ (2010) Species authentication of octopus, cuttlefish, bobtail and bottle squids (families Octopodidae, Sepiidae and Sepiolidae) by FINS methodology in seafoods. Food Chem 121:527–532

    Article  Google Scholar 

  7. Herrero B, Madriñan M, Vieites JM, Espiñeira M (2010) Rapid identification of seaweeds in food products by PCR combined with ALF-RFLP and FINS methodologies. J Agric Food Chem 58:11586–11592

    Article  CAS  Google Scholar 

  8. Muths D, Grewe P, Jean C, Bourjea J (2009) Genetic population structure of the Swordfish (Xiphias gladius) in the southwest Indian Ocean: sex-biased differentiation, congruency between markers and its incidence in a way of stock assessment. Fish Res 97:263–269

    Article  Google Scholar 

  9. Reeb CA, Arcangeli L, Block BA (2003) Development of 11 microsatellite loci for population studies in the swordfish, Xiphias gladius (Teleostei : Scombridae). Mol Ecol Notes 3:147–149

    Article  CAS  Google Scholar 

  10. Chow S, Okamoto H, Uozumi Y, Takeuchi Y, Takeyama H (1997) Genetic stock structure of the swordfish (Xiphias gladius) inferred by PCR-RFLP analysis of the mitochondrial DNA control region. Mar Biol 127:359–367

    Article  Google Scholar 

  11. Hsieh HS, Chai T, Cheng CA, Hsieh YW, Hwang DF (2004) Application of DNA technique for identifying the species of different processed products of swordfish meat. J Food Sci 69:C1–C6

    Article  Google Scholar 

  12. Hanna SE, Connor CJ, Wang HH (2006) Real-time polymerase chain reaction for the food microbiologist: technologies, applications, and limitations. J Food Sci 70:R49–R53

    Article  Google Scholar 

  13. Herrero B, Vieites JM, Espiñeira M (2010) Detection of anisakids in fish and seafood products by real-time PCR. Food Control (In Press)

  14. Hernandez M, Esteve T, Pla M (2005) Real-time polymerase chain reaction based assays for quantitative detection of barley, rice, sunflower, and wheat. J Agric Food Chem 53:7003–7009

    Article  CAS  Google Scholar 

  15. Hernandez M, Rodriguez-Lázaro D, Fernando A (2005) Current methodology for detection, identification and quantification of genetically modified organisms. Curr Anal Chem 1:203–221

    Article  CAS  Google Scholar 

  16. Hird H, Lloyd J, Goodier R, Brown J, Reece P (2003) Detection of peanut using real-time polymerase chain reaction. Eur Food Res Technol 217:265–268

    Article  CAS  Google Scholar 

  17. Herrero B, Madriñan M, Vieites JM, Espiñeira M (2010) Authentication of Atlantic Cod (Gadus morhua) using real time PCR. J Agric Food Chem 58:4794–4799

    Article  CAS  Google Scholar 

  18. Herrero B, Vieites JM, Espiñeira M (2011) Authentication of Atlantic Salmon (Salmo salar) using real time PCR. Food Chem (In Press)

  19. Rojas M, Gonzalez I, Pavon MA, Pegels N, Hernandez PE, Garcia T, Martin R (2011) Application of a real-time PCR assay for the detection of ostrich (Struthio camelus) mislabelling in meat products from the retail market. Food Control 22:523–531

    Article  CAS  Google Scholar 

  20. Jonker KM, Tilburg JJ, Hagele GH, de Boer E (2008) Species identification in meat products using real-time PCR. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 25:527–533

    CAS  Google Scholar 

  21. Trotta M, Schönhuth S, Pepe T, Cortesi ML, Puyet A, Bautista JM (2005) Multiplex PCR method for use in real-time PCR for identification of fish fillets from grouper (Epinephelus and Mycteroperca species) and common substitute species. J Agric Food Chem 53:2039–2045

    Article  CAS  Google Scholar 

  22. Compagno LJV (1984) FAO species catalogue. Sharks of the world. An annotated and illustrated catalogue of shark species known to date part 2—Carcharhiniformes

  23. Compagno LJV (1984) FAO species catalogue. Sharks of the world. An annotated and illustrated catalogue of shark species known to date part 1—Hexanchiformes to Lamniformes

  24. Roger SO, Bendich AJ (1988) Extraction of DNA from plant tissues. Plant Mol Biol Man A 6:1–10

    Google Scholar 

  25. Winfrey MRR, Rott MA, Wortman AT (1997) UnraVeling DNA: molecular biology for the laboratory. Prentice Hall, New York

    Google Scholar 

  26. Burgener M (1997) Molecular species differentiation of fish and mammals. University of Bern, Switzerland

    Google Scholar 

  27. McCarthy C (1996) Chromas version 1.45. School of Health science, Griffifth University, Gold Coast Campus, Queensland, Australia

  28. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  Google Scholar 

  29. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  30. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 10:512–526

    Google Scholar 

  31. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  CAS  Google Scholar 

  32. Espiñeira M, Gonzalez-Lavin N, Vieites JM, Santaclara FJ (2008) Authentication of anglerfish species (Lophius spp) by means of polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and forensically informative nucleotide sequencing (FINS) methodologies. J Agric Food Chem 56:10594–10599

    Article  Google Scholar 

  33. Espiñeira M, Gonzalez-Lavin N, Vieites JM, Santaclara FJ (2008) Development of a method for the genetic identification of flatfish species on the basis of mitochondrial DNA sequences. J Agric Food Chem 56:8954–8961

    Article  Google Scholar 

  34. Perez M, Presa P (2008) Validation of a tRNA-Glu-cytochrome b key for the molecular identification of 12 hake species (Merluccius spp.) and Atlantic Cod (Gadus morhua) Using PCR-RFLPs, FINS, and BLAST. J Agric Food Chem 56:10865–10871

    Article  CAS  Google Scholar 

  35. Bartlett SE, Davidson WS (1992) FINS (forensically informative nucleotide sequencing): a procedure for identifying the animal origin of biological specimens. Biotechniques 12:408–411

    CAS  Google Scholar 

  36. Hillis DM, Bull JJ (1993) An empirical-test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182–192

    Google Scholar 

  37. Lago FC, Herrero B, Vieites JM, Espiñeira M (2010) Genetic identification of horse mackerel and related species in seafood products by means FINS methodology. J Agric Food Chem (In Press)

  38. Vadopalas B, Bouma J, Jackels C, Friedman C (2006) Application of real-time PCR for simultaneous identification and quantification of larval abalone. J Exp Mar Biol Ecol 334:219–228

    Article  CAS  Google Scholar 

  39. Dorak MT (2006) Real-time PCR. Taylor & Francis Group, London and New York

    Google Scholar 

  40. Bustin SA (2004) A-Z of quantitative PCR. International University Line, La Jolla

    Google Scholar 

  41. Espiñeira M, Vieites JM, Santaclara FJ (2009) Development of a genetic method for the identification of salmon, trout, and bream in seafood products by means of PCR-RFLP and FINS methodologies. Eur Food Res Technol 229:785–793

    Article  Google Scholar 

Download references

Acknowledgments

We thank Josune Larrañaga, Ana Alfaya and Eva Franco (Mascato Salvaterra S.L.) for providing some of the samples included in this work.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Montserrat Espiñeira.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Herrero, B., Lago, F.C., Vieites, J.M. et al. Authentication of swordfish (Xiphias gladius) by RT–PCR and FINS methodologies. Eur Food Res Technol 233, 195–202 (2011). https://doi.org/10.1007/s00217-011-1502-0

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00217-011-1502-0

Keywords

Navigation