Abstract
QTL for stem sugar-related and other agronomic traits were identified in a converted sweet (R9188) × grain (R9403463-2-1) sorghum population. QTL analyses were conducted using phenotypic data for 11 traits measured in two field experiments and a genetic map comprising 228 SSR and AFLP markers grouped into 16 linkage groups, of which 11 could be assigned to the 10 sorghum chromosomes (SBI-01 to SBI-10). QTL were identified for all traits and were generally co-located to five locations (SBI-01, SBI-03, SBI-05, SBI-06 and SBI-10). QTL alleles from R9188 were detected for increased sucrose content and sugar content on SBI-01, SBI-05 and SBI-06. R9188 also contributed QTL alleles for increased Brix on SBI-05 and SBI-06, and increased sugar content on SBI-03. QTL alleles from R9403463-2-1 were found for increased sucrose content and sucrose yield on SBI-10, and increased glucose content on SBI-07. QTL alleles for increased height, later flowering and greater total dry matter yield were located on SBI-01 of R9403463-2-1, and SBI-06 of R9188. QTL alleles for increased grain yield from both R9403463-2-1 and R9188 were found on SBI-03. As an increase in stem sugars is an important objective in sweet sorghum breeding, the QTL identified in this study could be further investigated for use in marker-assisted selection of sweet sorghum.
Similar content being viewed by others
References
Aitken K, Jackson P, McIntyre C (2005) A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo) logous linkage groups in a sugarcane cultivar. Theor Appl Genet 110:789–801
Aitken K, Jackson P, McIntyre C (2006) Quantitative trait loci identified for sugar related traits in a sugarcane (Saccharum spp.) cultivar x Saccharum officinarum population. Theor Appl Genet 112:1306–1317
Albertson P, Grof C (2007) Application of high performance anion exchange-pulsed amperometric detection to measure the activity of key sucrose metabolising enzymes in sugarcane. J Chromatogr B 845:151–156
Al-Janabi S, Honeycutt R, Sobral B (1994a) Chromosome assortment in Saccharum. Theor Appl Genet 89:959–963
Al-Janabi S, McClelland M, Petersen C, Sobral B (1994b) Phylogenetic analysis of organellar DNA sequences in the Andropogoneae: Saccharinae. Theor Appl Genet 88:933–944
Bhattramakki D, Dong J, Chhabra A, Hart G (2000) An integrated SSR and RFLP linkage map of Sorghum bicolor (L.) Moench. Genome 43:988–1002
Butler D, Cullis B, Gilmour A, Gogel B (2003) SAMM, reference manual. In: Technical report. Queensland Department of Primary Industries
Crasta O, Xu W, Rosenow D, Mullet J, Nguyen H (1999) Mapping of post-flowering drought resistance traits in grain sorghum: association of QTLs influencing premature senescence and maturity. Mol Genet Genomics 262:579–588
Cuiyan Z (1998) Review and perspective on sweet sorghum breeding in China. Int Sorghum Millets Newsl 39:70–71
Cullis B, Gleeson A (1991) Spatial analysis of field experiments—an extension to two dimensions. Biometrics 47:1449–1460
Dufour P, Grivet L, D’Hont A, Deu M, Trouche G, Glaszmann J, Hamon P (1996) Comparative genetic mapping between duplicated segments on maize chromosomes 3 and 8 and homoeologous regions in sorghum and sugarcane. Theor Appl Genet 92:1024–1030
Dufour P, Deu M, Grivet L, D’Hont A, Paulet F, Bouet A, Lanaud C, Glaszmann J, Hamon P (1997) Construction of a composite sorghum genome map and comparison with sugarcane, a related complex polyploid. Theor Appl Genet 94:409–418
Feltus F, Hart G, Schertz F, Casa A, Brown P, Klein P, Kresovich S, Paterson A (2006) Genetic map alignment and QTL correspondence between inter- and intra-specific sorghum populations. Theor Appl Genet 112:1295–1305
Ferraris R, Charles-Edwards D (1986) A comparative analysis of the growth of sweet and forage sorghum crops II accumulation of soluble carbohydrates and nitrogen. Aust J Agric Res 37:513–533
Grivet L, D’Hont A, Dufour P, Hamon P, Roques D, Glaszmann J (1994) Comparative genome mapping of sugarcane with other species within the Andropogoneae tribe. Heredity 73:500–508
Guimaraes C, Sills G, Sobral B (1997) Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize. Proc Natl Acad Sci USA 94:14261–14266
Hart G, Schertz K, Peng Y, Syed N (2001) Genetic mapping of Sorghum bicolor (L.) Moench QTLs that control variation in tillering and other morphological characters. Theor Appl Genet 103:1232–1242
Hoisington D (1992) Laboratory protocols: CIMMYT applied molecular genetics laboratory. CIMMYT, Mexico
Hunter E, Anderson I (1997) Sweet sorghum. In: Janick J (ed) Horticultural reviews. Wiley, New York, pp 73–104
Kim J-S, Klein P, Klein R, Price H, Mullet J, Stelly D (2004) Chromosome identification and nomenclature of Sorghum bicolor. Genetics 169:1169–1173
Klein R, Rodriguez-Herrera R, Schlueter J, Klein P, Yu Z, Rooney W (2001) Identification of genomic regions that affect grain mold incidence and other traits of agronomic importance in sorghum. Theor Appl Genet 102:307–319
Kong L, Dong L, Hart G (2000) Characteristics, linkage-map positions and allelic differentiation of Sorghum bicolor (L.) Moench DNA simple-sequence repeats (SSRs). Theor Appl Genet 101:438–448
Lin Y-R, Schertz K, Paterson A (1995) Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. Genetics 141:391–411
McBee G, Waskom R, Miller F, Creelman R (1983) Effect of senescence and nonsenescence on carbohydrates in sorghum during late kernel maturity states. Crop Sci 23:370–375
Menz M, Klein R, Mullet J, Obert J, Unruh N, Klein P (2002) A high-density genetic map of Sorghum bicolor (L.) Moench based on 2926 AFLP, RFLP and SSR markers. Plant Mol Biol 48:483–499
Mester D, Ronin Y, Minkov D, Nevo E, Korol A (2003) Constructing large-scale genetic maps using an evolutionary strategy algorithm. Genetics 165:2269–2282
Ming R, Liu S, Lin Y, da Silva J, Wilson W, Braga D, van Deynz A, Wenslaff T, Wu K, Moore P, Burnquist W, Sorrells M, Irvine J, Paterson A (1998) Detailed alignment of Saccharum and Sorghum chromosomes: comparative organisation of closely related diploid and polyploid genomes. Genetics 150:1663–1682
Ming R, Liu S, Bowers J, Moore P, Irvine J, Paterson A (2002a) Construction of a Saccharum consensus genetic map from two interspecific crosses. Crop Sci 42:570–583
Ming R, Wang Y, Draye X, Moore P, Irvine J, Paterson A (2002b) Molecular dissection of complex traits in autopolyploids: mapping QTLs affecting sugar yield and related traits in sugarcane. Theor Appl Genet 105:332–345
Multipoint, Accessed 16/05/07, MultiQTL—the best QTL mapping software, www.multiqtl.com
Natoli A, Gorni C, Chegdani F, Ajmone Marson P, Colombi C, Lorenzoni C, Marocco A (2002) Identification of QTLs associated with sweet sorghum quality. Maydica 47:311–322
Pereira M, Lee M (1995) Identification of genomic regions affecting plant height in sorghum and maize. Theor Appl Genet 90:380–388
Rami J-F, Dufour P, Trouche G, Fliedel G, Mestres C, Davrieux F, Blanchard P, Hamon P (1998) Quantitative trait loci for grain quality, productivity, morphological and agronomical traits in sorghum (Sorghum bicolor L. Moench). Theor Appl Genet 97:605–616
Reddy B, Ramesh S, Reddy S, Ramaiah B, Salimath P, Kachapur R (2005) Sweet sorghum—a potential alternate raw material for bio-ethanol and bio-energy. Int Sorghum Millets Newsl 46:79–86
Reddy B, Reddy P (2003) Sweet sorghum: characteristics and potential. Int Sorghum Millets Newsl 44:26–28
Reffay N, Jackson P, Aitken K, Hoarau J-Y, D’Hont A, Besse P, McIntyre C (2005) Characterisation of genome regions incorporated from an important wild relative into Australian sugarcane. Mol Breed 15:367–381
Tao Y, Manners J, Ludlow M, Henzell R (1993) DNA polymorphisms in grain sorghum (Sorghum bicolor (L.) Moench). Theor Appl Genet 86:679–688
Tao Y, Jordan D, Henzell R, McIntyre C (1998) Construction of a genetic map in a sorghum RIL population using probes from different sources and its comparison with other sorghum maps. Aust J Agric Res 49:729–736
Van Os H, Stam P, Visser R, Van Eck H (2005) RECORD: a novel method for ordering loci on a genetic linkage map. Theor Appl Genet 112:30–40
Voorrips R (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78
Vos P, Hogers R, Bleeker M, Reijans M, Van Der Lee T, Hornes M (1995) AFLP: a new concept for DNA fingerprinting. Nucleic Acids Res 23:4407–4414
Wang S, Basten C, Gaffney P, Zeng Z-B (2004) WinQTL Cartographer. Bioinformatics Research Center, North Carolina State University)
Yang J, Hu C, Ye X, Zhu J (2005) QTLNetwork-2.0. Institute of Bioinformatics, Zhejiang University, Hangzhou, China. http://ibi.zju.edu.cn/software/qtlnetwork
Yun-long B, Seiji Y, Maiko I, Hong-wei C (2006) QTLs for sugar content of stalk in sweet sorghum (Sorghum bicolor L. Moench). Agric Sci China 5:736–744
Acknowledgements
We gratefully acknowledge the financial support of the Sugar Research and Development Corporation (SRDC) to the first author. The authors thank Donna Glassop (CSIRO) for her assistance with the HPLC, Colleen Hunt (DPIF) for her statistical analyses and Kirsten Halloran (DPIF) for her technical assistance.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Ritter, K.B., Jordan, D.R., Chapman, S.C. et al. Identification of QTL for sugar-related traits in a sweet × grain sorghum (Sorghum bicolor L. Moench) recombinant inbred population. Mol Breeding 22, 367–384 (2008). https://doi.org/10.1007/s11032-008-9182-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11032-008-9182-6