Abstract
Motivated by experimental work (Miller et al. in Biomaterials 27(10):2213–2221, 2006, 32(11):2775–2785, 2011) we investigate the effect of growth factor driven haptotaxis and proliferation in a perfusion tissue engineering bioreactor, in which nutrient-rich culture medium is perfused through a 2D porous scaffold impregnated with growth factor and seeded with cells. We model these processes on the timescale of cell proliferation, which typically is of the order of days. While a quantitative representation of these phenomena requires more experimental data than is yet available, qualitative agreement with preliminary experimental studies (Miller et al. in Biomaterials 27(10):2213–2221, 2006) is obtained, and appears promising. The ultimate goal of such modeling is to ascertain initial conditions (growth factor distribution, initial cell seeding, etc.) that will lead to a final desired outcome.
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Acknowledgements
This work is supported by Award No. KUK-C1-013-04 made by King Abdullah University of Science and Technology (KAUST). The authors wish to thank Dr. Lee Weiss and Dr. Phil Campbell for use of experimental images included in this paper. J.P. would like to thank Drs. Treena Arinzeh, Shahriar Afkami, and Michael Siegel for much useful guidance with development and numerical solution of the model S.L.W. is grateful to the ERSRC for funding in the form of an Advanced Research Fellowship.
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Appendix: Numerical Scheme
Appendix: Numerical Scheme
The first step in solving the system consists of assigning an initial cell seeding, which (via Eq. (32)) determines an initial scaffold permeability.
1.1 A.1 Pressure
Equations (27) and (28) then combine to form
which is solved, subject to the unit pressure drop boundary conditions (39), using a finite volume method. A sample control volume is shown in Fig. 22. The discretization for solving Eq. (45) is
where b contains boundary data,
and capital letters refer to points while lower case letters refer to the edge of the control volume. The discretization is set up to find solutions at the centers of boxes created by the prescribed grid, and because of this it allows for simple inclusion of the Dirichlet boundary data at x=0,1 and Neumann boundary data at y=0,1. The built-in MATLAB GMRES program is used to solve the pressure equation at the aforementioned centers of the boxes, and a MATLAB command “TriScatteredInterp” is used to extrapolate the data back onto the desired grid space. From this pressure solution, we determine the fluid velocity corresponding to a unitary pressure drop from Darcy’s law, and calculate the total flux, \(\tilde{Q}_{0}\), as in Eq. (40). We then determine the true fluid velocity in the domain via Eq. (41).
1.2 A.2 Nutrient Concentration
We solve for the “initial” nutrient concentration in the scaffold by solving Eq. (29) via an upwind finite difference method from x=0 to x=1. The method is
where u=(u,v). This method can be used because in all cases we consider, flow is unidirectional with respect to the x-component of the velocity, thus u i,j is always positive.
1.3 A.3 Cell Density
The advective drag experienced by the cells is then determined as a ratio of the fluid velocity by (δ/ϵ)u and the cell density is calculated at the subsequent time step using a semiimplicit ADI-type method (the nonlinear proliferation term is dealt with explicitly). The ADI-type method is
This process is then repeated until the user-defined end time is attained. The solution method described is first order in time and first order in space.
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Pohlmeyer, J.V., Waters, S.L. & Cummings, L.J. Mathematical Model of Growth Factor Driven Haptotaxis and Proliferation in a Tissue Engineering Scaffold. Bull Math Biol 75, 393–427 (2013). https://doi.org/10.1007/s11538-013-9810-0
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DOI: https://doi.org/10.1007/s11538-013-9810-0