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Microfluidics-Based PCR for Fusion Transcript Detection

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Clinical Applications of PCR

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1392))

Abstract

The microfluidic technology allows the production of network of submillimeter-size fluidic channels and reservoirs in a variety of material systems. The microfluidic-based polymerase chain reaction (PCR) allows automated multiplexing of multiple samples and multiple assays simultaneously within a network of microfluidic channels and chambers that are co-ordinated in controlled fashion by the valves. The individual PCR reaction is performed in nanoliter volume, which allows testing on samples with limited DNA and RNA. The microfluidics devices are used in various types of PCR such as digital PCR and single molecular emulsion PCR for genotyping, gene expression, and miRNA expression. In this chapter, the use of a microfluidics-based PCR for simultaneous screening of 14 known fusion transcripts in patients with leukemia is described.

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References

  1. Kulinsky L, Noroozi Z, Madou M (2013) Present technology and future trends in point-of-care microfluidic diagnostics. Methods Mol Biol 949:3–23

    Article  CAS  PubMed  Google Scholar 

  2. Jayamohan H, Sant HJ, Gale BK (2013) Applications of microfluidics for molecular diagnostics. Methods Mol Biol 949:305–334

    Article  CAS  PubMed  Google Scholar 

  3. Moltzahn F et al (2011) High throughput microRNA profiling: optimized multiplex qRT-PCR at nanoliter scale on the fluidigm dynamic arrayTM IFCs. J Vis Exp (54). pii:2552

    Google Scholar 

  4. Kim MS, Kwon S, Park JK (2013) Breast cancer diagnostics using microfluidic multiplexed immunohistochemistry. Methods Mol Biol 949:349–364

    Article  CAS  PubMed  Google Scholar 

  5. Wang J et al (2009) High-throughput single nucleotide polymorphism genotyping using nanofluidic dynamic arrays. BMC Genomics 10:561

    Article  PubMed Central  PubMed  Google Scholar 

  6. Dhoubhadel BG et al (2014) A novel high-throughput method for molecular serotyping and serotype-specific quantification of Streptococcus pneumoniae using a nanofluidic real-time PCR system. J Med Microbiol 63(Pt 4):528–539

    Article  CAS  PubMed  Google Scholar 

  7. Jang JS et al (2011) Quantitative miRNA expression analysis using fluidigm microfluidics dynamic arrays. BMC Genomics 12:144

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  8. Leng X, Yang CJ (2013) Agarose droplet microfluidics for highly parallel and efficient single molecule emulsion PCR. Methods Mol Biol 949:413–422

    Article  PubMed  Google Scholar 

  9. Swerdlow SH, Campo E et al (2008) WHO classification of tumours of haematopoietic and lymphoid tissues, 4th edn. WHO press, Lyon

    Google Scholar 

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Acknowledgements

I would like to thank Dr. Rajyalakshmi Luthra, Dr. Rajesh Singh, Seema Hai, and molecular diagnostic laboratory at MD Anderson Cancer Center for providing figures and technical support.

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Correspondence to Hui Chen M.D., Ph.D. .

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Chen, H. (2016). Microfluidics-Based PCR for Fusion Transcript Detection. In: Luthra, R., Singh, R., Patel, K. (eds) Clinical Applications of PCR. Methods in Molecular Biology, vol 1392. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3360-0_10

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  • DOI: https://doi.org/10.1007/978-1-4939-3360-0_10

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3358-7

  • Online ISBN: 978-1-4939-3360-0

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