An automated protocol for modelling peptide substrates to proteases
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Volume 21, issue 1, December 2020
436 articles in this issue
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Inter-protein residue covariation information unravels physically interacting protein dimers
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Inferring time-dependent population growth rates in cell cultures undergoing adaptation
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Menoci: lightweight extensible web portal enhancing data management for biomedical research projects
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annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions
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Flora Capture: a citizen science application for collecting structured plant observations
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PyClone-VI: scalable inference of clonal population structures using whole genome data
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iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features
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Hybrid attentional memory network for computational drug repositioning
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ideal: an R/Bioconductor package for interactive differential expression analysis
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High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status
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multiGSEA: a GSEA-based pathway enrichment analysis for multi-omics data
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Regional registration of whole slide image stacks containing major histological artifacts
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LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata
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A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs
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Finding a suitable library size to call variants in RNA-Seq
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A novel computational strategy for DNA methylation imputation using mixture regression model (MRM)
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Isabl Platform, a digital biobank for processing multimodal patient data
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Increased biological relevance of transcriptome analyses in human skeletal muscle using a model-specific pipeline
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Multiple imputation and direct estimation for qPCR data with non-detects
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CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph
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Improving biomedical named entity recognition with syntactic information
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Mixed logistic regression in genome-wide association studies
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MADloy: robust detection of mosaic loss of chromosome Y from genotype-array-intensity data
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TruNeo: an integrated pipeline improves personalized true tumor neoantigen identification
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The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data
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LC-N2G: a local consistency approach for nutrigenomics data analysis
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A computational diffusion model to study antibody transport within reconstructed tumor microenvironments
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Clover: a clustering-oriented de novo assembler for Illumina sequences
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Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads
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Stability and bifurcations in a discrete-time epidemic model with vaccination and vital dynamics
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Latent class distributional regression for the estimation of non-linear reference limits from contaminated data sources
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Deep learning based DNA:RNA triplex forming potential prediction
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SCELLECTOR: ranking amplification bias in single cells using shallow sequencing
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Quantitative Structure–Mutation–Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction
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DeepciRGO: functional prediction of circular RNAs through hierarchical deep neural networks using heterogeneous network features
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Performance of copy number variants detection based on whole-genome sequencing by DNBSEQ platforms
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High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing
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Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm
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Novel domain expansion methods to improve the computational efficiency of the Chemical Master Equation solution for large biological networks
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Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes
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A sequence embedding method for enzyme optimal condition analysis
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Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks
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DeepCryoPicker: fully automated deep neural network for single protein particle picking in cryo-EM
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Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network
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Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines
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Prediction and prioritization of autism-associated long non-coding RNAs using gene expression and sequence features
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