A mesh generation and machine learning framework for Drosophilagene expression pattern image analysis
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Volume 14, issue 1, December 2013
372 articles in this issue
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Identification of reproducible gene expression signatures in lung adenocarcinoma
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Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching
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A comparison study of succinct data structures for use in GWAS
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Meta-analysis methods for combining multiple expression profiles: comparisons, statistical characterization and an application guideline
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Variational attenuation correction in two-view confocal microscopy
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Network-based differential gene expression analysis suggests cell cycle related genes regulated by E2F1 underlie the molecular difference between smoker and non-smoker lung adenocarcinoma
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A flexible statistical model for alignment of label-free proteomics data - incorporating ion mobility and product ion information
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Using passenger mutations to estimate the timing of driver mutations and identify mutator alterations
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iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
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Detection of attractors of large Boolean networks via exhaustive enumeration of appropriate subspaces of the state space
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Gene set bagging for estimating the probability a statistically significant result will replicate
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Sample size calculation based on exact test for assessing differential expression analysis in RNA-seq data
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Viral quasispecies inference from 454 pyrosequencing
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Balony:a software package for analysis of data generated by synthetic genetic array experiments
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The causal effect of red blood cell folate on genome-wide methylation in cord blood: a Mendelian randomization approach
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Status quo of annotation of human disease variants
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On the amyloid datasets used for training PAFIG Â how (not) to extend the experimental dataset of hexapeptides
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Image-level and group-level models for Drosophilagene expression pattern annotation
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MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis
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Selecting informative subsets of sparse supermatrices increases the chance to find correct trees
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Heterodimeric protein complex identification by naïve Bayes classifiers
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Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
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wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases
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Partial inhibition and bilevel optimization in flux balance analysis
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Transferring functional annotations of membrane transporters on the basis of sequence similarity and sequence motifs
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A novel approach for protein subcellular location prediction using amino acid exposure
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LUD, a new protein domain associated with lactate utilization
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Reverse causal reasoning: applying qualitative causal knowledge to the interpretation of high-throughput data
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zipHMMlib: a highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm
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MetSizeR: selecting the optimal sample size for metabolomic studies using an analysis based approach
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Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data
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A novel phenotypic dissimilarity method for image-based high-throughput screens
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Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)
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Fastphylo: Fast tools for phylogenetics
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Similarity maps and hierarchical clustering for annotating FT-IR spectral images
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YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data
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Cheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicana
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A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images
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Filling out the structural map of the NTF2-like superfamily
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snp-search: simple processing, manipulation and searching of SNPs from high-throughput sequencing
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Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
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SUNPLIN: Simulation with Uncertainty for Phylogenetic Investigations
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CoMAGC: a corpus with multi-faceted annotations of gene-cancer relations
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