ParsEval: parallel comparison and analysis of gene structure annotations
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Volume 13, issue 1, December 2012
337 articles in this issue
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Integrated QSAR study for inhibitors of hedgehog signal pathway against multiple cell lines:a collaborative filtering method
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Estimation of sequencing error rates in short reads
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Computational modeling of the bHLH domain of the transcription factor TWIST1 and R118C, S144R and K145E mutants
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Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
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Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes
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Optimal experiment selection for parameter estimation in biological differential equation models
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A Bayesian method for comparing and combining binary classifiers in the absence of a gold standard
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Finding minimum gene subsets with heuristic breadth-first search algorithm for robust tumor classification
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Analysis of high dimensional data using pre-defined set and subset information, with applications to genomic data
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The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding
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A novel hierarchical clustering algorithm for gene sequences
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Defining and searching for structural motifs using DeepView/Swiss-PdbViewer
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A text-mining system for extracting metabolic reactions from full-text articles
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An image classification approach to analyze the suppression of plant immunity by the human pathogen SalmonellaTyphimurium
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Optimization of de novo transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms
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Integrative prescreening in analysis of multiple cancer genomic studies
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Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation
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Re-visiting protein-centric two-tier classification of existing DNA-protein complexes
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SNP interaction detection with Random Forests in high-dimensional genetic data
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A graph-based approach for designing extensible pipelines
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Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study
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ParticleCall: A particle filter for base calling in next-generation sequencing systems
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Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures
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Protein-protein binding site identification by enumerating the configurations
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Minimalist ensemble algorithms for genome-wide protein localization prediction
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Genes2FANs: connecting genes through functional association networks
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TAPDANCE: An automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data
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Detecting sequence dependent transcriptional pauses from RNA and protein number time series
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Towards a theoretical understanding of false positives in DNA motif finding
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A statistical approach to selecting and confirming validation targets in -omics experiments
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PREMIM and EMIM: tools for estimation of maternal, imprinting and interaction effects using multinomial modelling
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Surprising results on phylogenetic tree building methods based on molecular sequences
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Identifying mutation regions for closely related individuals without a known pedigree
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Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures
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QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence
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The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
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miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments
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Comparative study of classification algorithms for immunosignaturing data
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