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QSPR/QSAR solely based on molecular surface electrostatic potentials for benzenoid hydrocarbons

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Abstract

Benzenoid hydrocarbons are a group of the most important π-electron systems having the attention of both experimental and theoretical chemists for the last 100 years. In the present study, based on the general interaction properties function (GIPF) family descriptors, significant one- or two-parametric quantitative structure–property (activity) relationship models were developed for the prediction of properties/activities of benzenoids hydrocarbons. All descriptors were computed in density functional theory (DFT) at the B3LYP/STO-3G level of theory in Gaussian98 software. A large number of physico-chemical properties and two biological activities (e.g. bio-concentration factor and photo-induced toxicity) of these compounds were investigated by using multiple linear regressions. All created models were interpreted in term of selected descriptors. R 2 and R 2cv values of all models are respectively between 0.665–0.994 and 0.609–0.990 for the whole dataset of each property/activity. Maximum R 2 for Y-randomization (R 2max ) test and its cross-validation (R 2cv ,max) are between 0.098–0.485 and 0.002–0.357, respectively.

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References

  1. H.J. Lee, J. Villaume, D.C. Cullen, B.C. Kim, M.B. Gu, Biosens Bioelectron 18, 571 (2003)

    Article  CAS  Google Scholar 

  2. J.C. Drosos, M. Viola-Rhenals, R. Vivas-Reyes, J Chromatogr A 1217, 4411 (2010)

    Article  CAS  Google Scholar 

  3. Q. Jun, S. Chang-Hong, W. Jia, Procedia. Environ Sci 2, 1429 (2010)

    Google Scholar 

  4. S. Tao, X.C. Jiao, S.H. Chen, F.L. Xu, Y.J. Li, F.Z. Liu, Environ Pollut 140, 13 (2006)

    Article  CAS  Google Scholar 

  5. J. Beyer, G. Jonsson, C. Porte, M.M. Krahn, F. Ariese, Toxicol Phar 30, 224 (2010)

    Article  CAS  Google Scholar 

  6. I. Martorell, G. Perelló, R. Martí-Cid, V. Castell, J.M. Llobet, J.L. Domingo, Environ Int 36, 242 (2010)

    Article  Google Scholar 

  7. R. Ghavami, B. Sepehri, J Chromatogr A 1233, 116 (2012)

    Article  CAS  Google Scholar 

  8. F. Liu, Y. Liang, C. Cao, N. Zhou, Anal Chim Acta 594, 279 (2007)

    Article  CAS  Google Scholar 

  9. R.J. Hu, H.X. Liu, R.S. Zhang, C.X. Xue, X.J. Yao, M.C. Liu, Z.D. Hu, B.T. Fan, Talanta 68, 31 (2005)

    Article  CAS  Google Scholar 

  10. X.J. Yao, A. Panaye, J.P. Doucet, R.S. Zhang, H.F. Chen, M.C. Liu, Z.D. Hu, B.T. Fan, J Chem Inf Comput Sci 44, 1257 (2004)

    Article  CAS  Google Scholar 

  11. M. Karelson, Molecular Descriptors in QSAR/QSPR (Wiley, New York, 2000)

    Google Scholar 

  12. R. Todeschini, V. Consonni, Molecular Descriptors for Chemoinformatics, Volumes I & II (Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, 2009)

    Book  Google Scholar 

  13. J. Devillers, A.T. Balaban, Topological Indices and Related Descriptors in QSAR and QSPR (Eds. Gordon and Breach, Amestrdam, 1999)

    Google Scholar 

  14. M.M.C. Ferreira, Chemosphere 44, 125 (2001)

    Article  CAS  Google Scholar 

  15. G.N. Lu, Z. Dang, X.O. Tao, C. Yang, X.Y. Yi, Sci Total Environ 373, 289 (2007)

    Article  CAS  Google Scholar 

  16. S. Nikolić, A. Miličević, N. Trinajstić, Croat Chem Acta 79, 155 (2006)

    Google Scholar 

  17. P. Politzer, J.S. Murray, Fluid Phase Equilibr 185, 129 (2001)

    Article  CAS  Google Scholar 

  18. P. Politzer, J.S. Murray, P. Flodmark, J Phys Chem 100, 5538 (1996)

    Article  CAS  Google Scholar 

  19. P. Politzer, J.S. Murray, F.A. Bulat, J Mol. Model 16, 1731 (2010)

    Article  CAS  Google Scholar 

  20. P. Jin, T. Brinck, J.S. Murray, P. Politzer, Int J Quantum Chem 95, 632 (2003)

    Article  CAS  Google Scholar 

  21. W. Karacher, Spectral Atlas of Polycyclic Aromatic Compounds, vol. 2 (Kluwer academic publishers, Dordrecht, 1988), p. 16

    Book  Google Scholar 

  22. L.C. Sander, S.A. Wise, Adv Chromatogr 25, 139 (1986)

    CAS  Google Scholar 

  23. D. Mackay, W.-Y. Shiu, K.C. Ma, Illustrated Handbook of Physical-Chemical Properties and Environmental Fate of Organic Compounds, vol. 2 (Lewis/CRC, Boca Raton, 1992)

    Google Scholar 

  24. D. Mackay, D. Calloct, Partitioning and physical properties of PAHs, in The Handbook of Environmental Chemistry, vol. 3, Part J. PAHs and related compounds, ed. by A.H. Neilson (Springer, Berlin, 1998), pp. 325–346

    Google Scholar 

  25. A.T. Balaban, M. Pompe, J Phys Chem A 111, 2448 (2007)

    Article  CAS  Google Scholar 

  26. M. Randić, Chem Rev 103, 3449 (2003)

    Article  Google Scholar 

  27. ISIS Draw 2.3 (MDL Information Systems, Inc., 1990–2000)

  28. HyperChem Release 7.1 for Windows Molecular Modeling System Program Package, (HyperCube, 2002)

  29. M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, V.G. Zakrzewski, J.A. Montgomery, R.E. Stratmann, J.C. Burant, S. Dappich, J.M. Millam, A.D. Daniels, K.N. Kudin, M.C. Strain, O. Farkas, J. Tomasi, V. Barone, M. Cossi, R. Cammi, B. Mennucci, C. Pomelli, C. Adamo, S. Clifford, J. Ochterski, G. Petersson, P.Y. Aayala, Q. Cui, K. Morokuma, D.K. Malick, A.D. Rubuck, K. Raghavachari, J.B. Foresman, J. Cioslowski, J.V. Ortiz, B.B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. Gomperts, R.L. Martin, D.J. Fox, T. Keith, M.A. Al-Laham, C.Y. Peng, A. Nanayakkara, C. Gonzalez, M. Challacombe, P.M.W. Gill, B.G. Johnson, W. Chen, M.W. Wong, J.L. Andres, M. Head-Gordon, E.S. Replogle, J.A. Pople, Gaussian98, Revision A.5 (Gaussian Inc, Pittsburgh, 1998)

    Google Scholar 

  30. H.Y. Xu, J.W. Zou, Q.S. Yu, Y.H. Wang, J.Y. Zhang, H.X. Jin, Chemosphere 66, 1998 (2007)

    Article  CAS  Google Scholar 

  31. F.A. Bulat, A. Toro-Labbé, T. Brinck, J.S. Murray, P. Politzer, J Mol Model 16, 1679 (2010)

    Article  CAS  Google Scholar 

  32. J.S. Murray, F. Abu-Awwad, P. Politzer, J Phys Chem A 103, 1853 (1999)

    Article  CAS  Google Scholar 

  33. Y. Ma, K.C. Gross, C.A. Hollingsworth, P.G. Seybold, J.S. Murray, J Mol Model 10, 235 (2004)

    Article  CAS  Google Scholar 

  34. O.G. Gonzalez, J.S. Murray, Z. Peralta-Inga, P. Politzer, Int J Quantum Chem 83, 115 (2001)

    Article  CAS  Google Scholar 

  35. P. Kulshrestha, N. Sukumar, J.S. Murray, R.F. Giese, T.D. Wood, J Phys Chem A 113, 756 (2009)

    Article  CAS  Google Scholar 

  36. M.N. Hasan, P.C. Jurs, Anal Chem 60, 978 (1988)

    Article  CAS  Google Scholar 

  37. J. Olivero, T. Garcia, P. Payares, R. Viva, D. Diaz, E. Daza, P. Geerliger, J Pharm Sci 86, 625 (1997)

    Article  CAS  Google Scholar 

  38. R. Ghavami, S. Faham, Chromatographia 72, 893 (2010)

    Article  CAS  Google Scholar 

  39. M. Dumarey, A.M.V. Nederkassel, E. Deconinck, Y.V. Heyden, J Chromatogr A 1192, 81 (2008)

    Article  CAS  Google Scholar 

  40. J.G. Topliss, R.P. Edwards, J Med Chem 22, 1238 (1979)

    Article  CAS  Google Scholar 

  41. K. Varmuza, P. Filzmoser, Introduction to Multivariate Statistical Analysis in Chemometrics (Taylor & Francis Group, LLC, 2009)

    Book  Google Scholar 

  42. H. Kubinyi, QSAR: Hansch analysis and related approaches (VCH VerlagsgesellschaftmbH, D-69451 Weinheirn, Federal Republic of Germany, 1993)

  43. H. Kubinyi, F.A. Hamprecht, T. Mietzner, J Med Chem 41, 2553 (1998)

    Article  CAS  Google Scholar 

  44. D.M. Hawkins, J. Kraker, J Chemometr 24, 188 (2010)

    Article  CAS  Google Scholar 

  45. R. Ghavami, A. Najafi, M. Sajadi, F. Djannaty, J Mol Graph Modell 27, 105 (2008)

    Article  CAS  Google Scholar 

  46. D.M. Hawkins, S.C. Basak, D. Mills, J Chem Inf Comput Sci 43, 579 (2003)

    Article  CAS  Google Scholar 

  47. A. Tropsha, P. Gramatica, V. Gombar, Quant Struct Act Relat Comb Sci 22, 69 (2003)

    CAS  Google Scholar 

  48. R. Ghavami, F. Sadeghi, Chromatographia 70, 851 (2009)

    Article  CAS  Google Scholar 

  49. C. Hansch, R.P.A. Verma, Eur J Med Chem 44, 274 (2009)

    Article  CAS  Google Scholar 

  50. R. Christoph, R. Gerta, M. Markus, J Chem Inf Model 47, 2345 (2007)

    Article  Google Scholar 

  51. J.S. Murray, T. Brinck, P. Politzer, J Phys Chem 97, 13807 (1993)

    Article  CAS  Google Scholar 

  52. C. Hansch, J.E. Quinlan, G.L. Lawerence, J. Org. Chem. 33, 347 (1968)

    Article  CAS  Google Scholar 

  53. T. Harner, M. Shoeib, J Chem Eng Data 47, 228 (2002)

    Article  CAS  Google Scholar 

  54. M. Shoeib, T. Harner, Environ Toxicol Chem 21, 984 (2002)

    Article  CAS  Google Scholar 

  55. P. Sang, J.W. Zou, P. Zhou, L. Xu, Chemosphere 83, 1045 (2011)

    Article  CAS  Google Scholar 

Download references

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Correspondence to Raouf Ghavami.

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Ghavami, R., Sepehri, B. QSPR/QSAR solely based on molecular surface electrostatic potentials for benzenoid hydrocarbons. J IRAN CHEM SOC 13, 519–529 (2016). https://doi.org/10.1007/s13738-015-0761-2

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  • DOI: https://doi.org/10.1007/s13738-015-0761-2

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