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Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia

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Abstract

Restriction associated DNA sequencing was conducted on two genetically independent individuals of Iroko, Milicia excelsa, for the discovery of nuclear SNPs. Ninety-four samples, well-distributed over the natural range and including timber DNA, were screened at 138 loci on a MassARRAY iPLEX system. Amplification success was high and 77 loci were selected to design a set of markers for genetic timber tracking purposes.

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References

  • Blanc-Jolivet C, Liesebach M (2015) Tracing the origin and species identity of Quercus robur and Quercus petraea in Europe: a review. Silvae Genet 64:182–193

    Google Scholar 

  • Daïnou K, Bizoux JP, Doucet JL et al (2010) Forest refugia revisited: nSSRs and cpDNA sequences support historical isolation in a wide-spread African tree with high colonization capacity, Milicia excelsa (Moraceae). Mol Ecol 19:4462–4477

    Article  PubMed  Google Scholar 

  • Daïnou K, Mahy G, Duminil J et al (2014) Speciation slowing down in widespread and long-living tree taxa: insights from the tropical timber tree genus Milicia (Moraceae). Heredity (Edinb) 113:74–85

    Article  PubMed Central  Google Scholar 

  • Daïnou K, Blanc-Jolivet C, Degen B et al (2016) Revealing hidden species diversity in closely related species using nuclear SNPs, SSRs and DNA sequences- a case study in the tree genus Milicia. BMC Evol Biol 16:259

    Article  PubMed  PubMed Central  Google Scholar 

  • Degen B, Blanc-Jolivet C, Stierand K, Gillet E (2017) A nearest neighbour approach by genetic distance to the assignment of individual trees to geographic origin. Forensic Sci Int Genet 27:132–141

    Article  CAS  PubMed  Google Scholar 

  • Dumolin S, Demesure B, Petit R (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91:1253–1256

    Article  CAS  PubMed  Google Scholar 

  • Gregorius H-R (1987) The relationship between the concepts of genetic diversity and differentiation. Theor Appl Genet 74(3):397–401

    Article  CAS  PubMed  Google Scholar 

  • Jardine DI, Blanc-Jolivet C, Dixon RRM et al (2016) Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa. Conserv Genetic Resour 8:129. doi:10.1007/s12686-016-0529-8

    Article  Google Scholar 

  • Pakull B, Mader M, Kersten B, Ekue MRM, Dipelet UGB, Paulini M, Bouda ZHN, Degen B (2016) Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp. Conserv Genet Resour 8:283–297

    Article  Google Scholar 

  • Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proc Natl Acad Sci USA 94(17):9197–9201

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

The work was financially supported by the International Tropical Timber Organization (Project PD 620/11 Rev.1). Genotyping was performed at the Genomic and Sequencing Facility of Bordeaux (Grants from the Conseil Regional d’Aquitaine No. 20030304002FA and 20040305003FA and from the European Union, FEDER No. 2003227 and from Investissements d’avenir, Convention attributive d’aide No. ANR-10-EQPX-16-01).

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Correspondence to C. Blanc-Jolivet.

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Blanc-Jolivet, C., Kersten, B., Daïnou, K. et al. Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia . Conservation Genet Resour 9, 531–533 (2017). https://doi.org/10.1007/s12686-017-0716-2

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  • DOI: https://doi.org/10.1007/s12686-017-0716-2

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