Abstract
Chlamydiae are intracellular bacterial parasites of eukaryotes, ranging from amoebae to humans. They comprise many novel members and are investigated as emerging pathogens. Environmental studies highlighted similarities between the ecologies of chlamydiae and legionellae, both groups being important agents of respiratory infections. Herein, we analyzed nasal samples from healthy persons, searching for the presence of amoebae, chlamydiae and legionellae. From a total of 25 samples, we recovered by PCR eight samples positive to chlamydiae and six samples positive to legionellae. Among these samples, four were positive to both organisms. The sequencing of 16S rDNAs allowed to identify (i) among Chlamydiae: Parachlamydia acanthamoebae, Chlamydophila psittaci, Chlamydophila felis, and members of Rhabdochlamydiaceae, Simkaniaceae and E6 lineage and (ii) among Legionellaceae: Legionella longbeachae, Legionella bozemanii and Legionella impletisoli. Unexpectedly, we also recovered Diplorickettsia sp. Amoebae collected from nasal mucosae, Acanthamoeba and Vermamoeba, were endosymbiont-free, and chlamydiae revealed refractory to amoeba coculture. This study shows common exposure to chlamydiae and legionellae and suggests open air activities like gardening as a probable additional source of infection.
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References
Amann R, Springer N, Schönhuber W, Ludwig W, Schmid EN, Müller KD, Michel R (1997) Obligate intracellular bacterial parasites of acanthamoebae related to Chlamydia spp. Appl Environ Microbiol 63:115–121
Beeckman DS, Vanrompay DC (2009) Zoonotic Chlamydophila psittaci infections from a clinical perspective. Clin Microbiol Infect 15:11–17
Birtles RJ, Rowbotham TJ, Storey C, Marrie TJ, Raoult D (1997) Chlamydia-like obligate parasite of free-living amoebae. Lancet 349:925–926
Bodetti TJ, Jacobson E, Wan C, Hafner L, Pospischil A, Rose K, Timms P (2002) Molecular evidence to support the expansion of the host range of Chlamydophila pneumoniae to include reptiles as well as humans, horses, koalas and amphibians. Syst Appl Microbiol 25:146–152
Bogaert D, Keijser B, Huse S, Rossen J, Veenhoven R, van Gils E, Bruin J, Montijn R, Bonten M, Sanders E (2011) Variability and diversity of nasopharyngeal microbiota in children: A metagenomic analysis. PLoS ONE 6:e1703
Borella P, Guerrieri E, Marchesi I, Bondi M, Messi P (2005) Water ecology of Legionella and protozoan: environmental and public health perspectives. Biotechnol Annu Rev 11:355–380
Bragina A, Berg C, Cardinale M, Shcherbakov A, Chebotar V, Berg G (2012) Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle. ISME J 6:802–813
Brassinga AKC, Kinchen JM, Cupp ME, Day SR, Hoffman PS, Sifri CD (2010) Caenorhabditis is a metazoan host for Legionella. Cell Microbiol 12:343–361
Bulgari D, Bozkurt AI, Casati P, Cağlayan K, Quaglino F, Bianco PA (2012) Endophytic bacterial community living in roots of healthy and ‘Candidatus Phytoplasma mali’-infected apple (Malus domestica, Borkh.) trees. Antonie Van Leeuwenhoek 102:677–687
Burillo A, Bouza E (2010) Chlamydophila pneumoniae. Infect Dis Clin N Am 24:61–71
Camarinha-Silva A, Jáuregui R, Pieper DH, Wos-Oxley ML (2012) The temporal dynamics of bacterial communities across human anterior nares. Environ Microbiol Rep 4:126–132
Casati S, Giorgia-Martinoni A, Gaia V (2009) Commercial potting soils as an alternative infection source of Legionella pneumophila and other Legionella species in Switzerland. Clin Microbiol Infect 15:571–575
Casson N, Michel R, Müller KD, Aubert JD, Greub G (2008) Protochlamydia naegleriophila as etiologic agent of pneumonia. Emerg Infect Dis 14:168–172
Castellani Pastoris M, Passi C, Maroli M (1989) Evidence of Legionella pneumophila in some arthropods and related natural aquatic habitats. FEMS Microbiol Lett 62:259–263
Cazalet C, Gomez-Valero L, Rusniok C, Lomma M, Dervins-Ravault D, Newton HJ, Sansom FM, Jarraud S, Zidane N, Ma L, Bouchier C, Etienne J, Hartland EL, Buchrieser C (2010) Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires’ disease. PLoS Genet 6:e1000851
Cho MC, Kim H, An D, Lee M, Noh SA, Kim MN, Chong YP, Woo JH (2012) Comparison of sputum and nasopharyngeal swab specimens for molecular diagnosis of Mycoplasma pneumoniae, Chlamydophila pneumoniae, and Legionella pneumophila. Ann Lab Med 32:133–138
Codony F, Fittipaldi M, López E, Morató J, Agustí G (2012) Well water as a possible source of Waddlia chondrophila infections. Microbes Environ 27:529–532
Corsaro D, Greub G (2006) Pathogenic potential of novel Chlamydiae and diagnostic approaches to infections due to these obligate intracellular bacteria. Clin Microbiol Rev 19:283–297
Corsaro D, Venditti D (2004) Emerging chlamydial infections. Crit Rev Microbiol 30:75–106
Corsaro D, Venditti D (2006) Diversity of the parachlamydiae in the environment. Crit Rev Microbiol 32:185–199
Corsaro D, Venditti D (2009) Detection of Chlamydiae from freshwater environments by PCR, amoeba coculture and mixed coculture. Res Microbiol 160:547–552
Corsaro D, Valassina M, Venditti D, Venard V, Le Faou A, Valensin PE (1999) Multiplex PCR for rapid and differential diagnosis of Mycoplasma pneumoniae and Chlamydia pneumoniae in respiratory infections. Diagn Microbiol Infect Dis 35:105–108
Corsaro D, Venditti D, Le Faou A, Guglielmetti P, Valassina M (2001) A new chlamydia-like 16S rDNA sequence from a clinical sample. Microbiology 147:515–516
Corsaro D, Venditti D, Valassina M (2002a) New parachlamydial 16S rDNA phylotypes detected in human clinical samples. Res Microbiol 153:563–567
Corsaro D, Venditti D, Valassina M (2002b) New chlamydial lineages from freshwater samples. Microbiology 148:343–344
Corsaro D, Valassina M, Venditti D (2003) Increasing diversity within Chlamydiae. Crit Rev Microbiol 29:37–78
Corsaro D, Thomas V, Goy G, Venditti D, Radek R, Greub G (2007) ‘Candidatus Rhabdochlamydia crassificans’, an intracellular bacterial pathogen of the cockroach Blatta orientalis (Insecta: Blattodea). Syst Appl Microbiol 30:221–228
Corsaro D, Feroldi V, Saucedo G, Ribas F, Loret JF, Greub G (2009) Novel Chlamydiales strains isolated from a water treatment plant. Environ Microbiol 11:188–200
Corsaro D, Michel R, Walochnik J, Müller KD, Greub G (2010a) Saccamoeba lacustris, sp. nov. (Amoebozoa: Lobosea: Hartmannellidae), a new lobose amoeba, parasitized by the novel chlamydia ‘Candidatus Metachlamydia lacustris’ (Chlamydiae: Parachlamydiaceae). Eur J Protistol 46:86–95
Corsaro D, Saucedo Pages G, Catalan V, Loret JF, Greub G (2010b) Biodiversity of amoebae and amoeba-associated bacteria in water treatment plants. Int J Hyg Environ Health 213:158–166
Corsaro D, Müller KD, Wingender J, Michel R (2013a) “Candidatus Mesochlamydia elodeae“ (Chlamydiae: Parachlamydiaceae), a novel chlamydia parasite of free-living amoebae. Parasitol Res 112:829–838
Corsaro D, Walochnik J, Venditti D, Müller KD, Michel R (2013b) Molecular identification of a phage-infected Protochlamydia strain naturally harboured by non-encysting Naegleria. Acta Protozool 52:273–281
Darville T (2005) Chlamydia trachomatis infections in neonates and young children. Semin Pediatr Infect Dis 16:235–244
Diederen BM, Van Der Eerden MM, Vlaspolder F, Boersma WG, Kluytmans JA, Peeters MF (2009) Detection of respiratory viruses and Legionella spp. by real-time polymerase chain reaction in patients with community acquired pneumonia. Scand J Infect Dis 41:45–50
Engel AS (2010) Microbial diversity of cave ecosystems. In: Barton L, Mandl M, Loy A (eds), Geomicrobiology: Molecular & Environmental Perspectives. Springer. pp 219-238
Engel AS (2011) Karst ecosystems. In: Reitner J, Thiel V (eds) Encyclopedia of Geobiology. Springer Encyclopedia of Earth Sciences Series (EESS, formerly Kluwer Edition), Berlin, pp 521–553
Everett KDE, Thao M, Horn M, Dyszynski GE, Baumann P (2005) Novel chlamydiae in whiteflies and scale insects: endosymbionts ‘Candidatus Fritschea bemisiae’ strain Falk and ‘Candidatus Fritschea eriococci’ strain Elm. Int J Syst Evol Microbiol 55:1581–1587
Fields BS, Benson RF, Besser RE (2002) Legionella and Legionnaires’ disease: 25 years of investigation. Clin Microbiol Rev 15:506–526
Filion M, Hamelin RC, Bernier L, St-Arnaud M (2004) Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery. Appl Environ Microbiol 70:3541–3551
Fittipaldi M, Nocker A, Codony F (2012) Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification. J Microbiol Methods 91:276–289
Greub G, La Scola B, Raoult D (2004) Amoebae-resisting bacteria isolated from human nasal swabs by amoebal coculture. Emerg Infect Dis 10:470–477
Guan W, Xu Y, Chen DL, Xu JN, Tian Y, Chen JP (2012) Application of multilocus sequence analysis (MLSA) for accurate identification of Legionella spp. isolated from municipal fountains in Chengdu, China, based on 16S rRNA, mip, and rpoB genes. J Microbiol 50:127–136
Haider S, Collingro A, Walochnik J, Wagner M, Horn M (2008) Chlamydia-like bacteria in respiratory samples of community acquired pneumonia patients. FEMS Microbiol Lett 281:198–202
Hammerschlag MR (2004) Chlamydia trachomatis and Chlamydia pneumoniae infections in children and adolescents. Pediatr Rev 25:43–51
Heiskanen-Kosma T, Paldanius M, Korppi M (2008) Simkania negevensis may be a true cause of community acquired pneumonia in children. Scand J Infect Dis 40:127–130
Jobb G, von Haeseler A, Strimmer K (2004) TREEFINDER: a powerful ghraphical analysis environment for molecular phylogenetics. BMC Evol Biol 4:18
Jones AM, Harrison RM (2004) The effects of meteorological factors on atmospheric bioaerosol concentrations. Sci Total Environ 326:151–180
Kahane S, Greenberg D, Newman N, Dvoskin B, Friedman MG (2007) Domestic water supplies as a possible source of infection with Simkania. J Infect 54:75–81
Kim JS, Kwon SW, Jordan F, Ryu JC (2003) Analysis of bacterial community structure in bulk soil, rhizosphere soil and root samples of hot pepper plants using FAME and 16S rDNA clone libraries. J Microbiol Biotechnol 13:236–242
Kim E, Park JS, Simpson AG, Matsunaga S, Watanabe M, Murakami A, Sommerfeld K, Onodera NT, Archibald JM (2010) Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands. ISME J 4:1108–1120
Kostanjsek R, Strus J, Drobne D, Avgustin G (2004) ‘Candidatus Rhabdochlamydia porcellionis’, gen. nov., sp. nov., an intracellular bacterium from hepatopancreas of the terrestrial isopod Porcellio scaber. Int J Syst Evol Microbiol 54:543–549
Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H (2007) Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan. Syst Appl Microbiol 30:273–279
Lemon KP, Klepac-Ceraj V, Schiffer HK, Brodie EL, Lynch SV, Kolter R (2010) Comparative analyses of the bacterial microbiota of the human nostril and oropharynx. MBio 1:e00129–\
Lewis DM, Dutkiewicz J, Sorenson WG, Mamolen M, Hall JE (1990) Microbiological and serological studies of an outbreak of ‘humidifier fever’ in a print shop. Biodeterior Res 3:467–477
Lienard J, Croxatto A, Aeby S, Jaton K, Posfay-Barbe K, Gervaix A, Greub G (2011) Development of a new chlamydiales-specific real-time PCR and its application to respiratory clinical samples. J Clin Microbiol 49:2637–2642
Mediannikov O, Sekeyová Z, Birg ML, Raoult D (2010) A novel obligate intracellular Gamma-Proteobacterium associated with ixodid ticks, Diplorickettsia massiliensis, gen. nov., sp. nov. PLoS ONE 5:e11478
Michel R, Hauröder-Philippczyk B, Müller KD, Weishaar I (1994) Acanthamoeba from human nasal mucosa infected with an obligate intracellular parasite. Eur J Protistol 30:104–110
Michel R, Steinert M, Zöller L, Hauröder B, Hennig K (2004) Free-living amoebae may serve as hosts for the Chlamydia-like bacterium Waddlia chondrophila isolated from an aborted bovine fœtus. Acta Protozool 43:37–42
Michel R, Müller KD, Zöller L, Walochnick J, Hartmann M, Schmid EN (2005) Free-living amoebae serve as host for the Chlamydia-like bacterium Simkania negevensis. Acta Protozool 44:113–121
Miyamoto H, Yamamoto H, Arima K, Fujii J, Maruta K, Izu K, Shiomori T, Yoshida SI (1997) Development of a new seminested PCR method for detection of Legionella species and its application to surveillance of Legionellae in hospital cooling tower water. Appl Environ Microbiol 63:2489–2494
Muder RR, Yu VL (2002) Infection due to Legionella species other than L. pneumophila. Clin Infect Dis 35:990–998
Nascimento-Carvalho CM, Cardoso MRA, Paldianus M, Barral A, Araújo-Neto CA, Saukkoriipi A, Vainionpää R, Leinonen M, Ruuskanen O (2009) Simkania negevensis infection among Brazilian children hospitalized with community-acquired pneumonia. J Infect 58:250–253
Niemi S, Greub G, Puolakkainen M (2011) Chlamydia-related bacteria in respiratory samples in Finland. Microbes Infect 13:824–827
Northup DE, Melim LA, Spilde MN, Hathaway JJM, Garcia MG, Moya M, Stone FD, Boston PJ, Dapkevicius MLNE, Riquelme C (2011) Lava cave microbial communities within mats and secondary mineral deposits: Implications for life detection on other planets. Astrobiology 11:601–618
O’Connor BA, Carman J, Eckert K, Tucker G, Givney R, Cameron S (2007) Does using potting mix make you sick? Results from a Legionella longbeachae case-control study in South Australia. Epidemiol Infect 135:34–39
Pantchev A, Sting R, Bauerfeind R, Tyczka J, Sachse K (2010) Detection of all Chlamydophila and Chlamydia spp. of veterinary interest using species-specific real-time PCR assays. Comp Immunol Microbiol Infect Dis 33:473–484
Pérez LM, Codony F, Ríos K, Peñuela G, Adrados B, Fittipaldi M, de Dios G, Morató J (2012) Searching Simkania negevensis in environmental waters. Folia Microbiol 57:11–14
Pravinkumar SJ, Edwards G, Lindsay D, Redmond S, Stirling J, House R, Kerr J, Anderson E, Breen D, Blatchford O, McDonald E, Brown A (2010) A cluster of Legionnaires’ disease caused by Legionella longbeachae linked to potting compost in Scotland, 2008-2009. Euro Surveill 15:19496
Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, Weidmann M, Myers G, Vorimore F, Vicari N, Magnino S, Liebler-Tenorio E, Ruettger A, Bavoil PM, Hufert FT, Rosselló-Móra R, Marz M (2014) Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov. Syst Appl Microbiol 37:79–88
Sagaram US, De Angelis KM, Trivedi P, Andersen GL, Lu SE, Wang N (2009) Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Appl Environ Microbiol 75:1566–1574
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28:2731–2739
Taylor M, Ross K, Bentham R (2009) Legionella, protozoa, and biofilms: interactions within complex microbial systems. Microb Ecol 58:538–547
Trávniček M, Mardzinová S, Čisláková L, Valocký I, Weissová T (2002) Chlamydial infection of cats and human health. Folia Microbiol 47:441–444
Trivedi P, Duan Y, Wang N (2010) Huanglongbing, a systemic disease, restructures the bacterial community associated with citrus roots. Appl Environ Microbiol 76:3427–3436
Wheelhouse N, Sait M, Gidlow J, Deuchande R, Borel N, Baily J, Caldow G, Longbottom D (2011) Molecular detection of Chlamydia-like organisms in cattle drinking water. Vet Microbiol 152:196–199
Zhang YZ, Wang ET, Li M, Li QQ, Zhang YM, Zhao SJ, Jia XL, Zhang LH, Chen WF, Chen WX (2011) Effects of rhizobial inoculation, cropping systems and growth stages on endophytic bacterial community of soybean roots. Plant Soil 347:147–161
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Corsaro, D., Venditti, D. Detection of novel Chlamydiae and Legionellales from human nasal samples of healthy volunteers. Folia Microbiol 60, 325–334 (2015). https://doi.org/10.1007/s12223-015-0378-y
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DOI: https://doi.org/10.1007/s12223-015-0378-y