Abstract
We present here the backbone and side-chain NMR assignments of YFP Venus, a 238-residue protein that emits yellow fluorescence in its native state. Venus is a variant of the green fluorescent protein (GFP), which has improved chromophore maturation and brightness, and the photochemistry and photophysics of which are insensitive to experimental conditions, such as the pH value and buffer content, making it a favourable biomarker.
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Andrews BT, Schoenfish AR, Roy M, Waldo G, Jennings PA (2007) The rough energy landscape of superfolder GFP is linked to the chromophore. J Mol Biol 373:476–490. doi:10.1016/j.jmb.2007.07.071
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293. doi:10.1007/BF00197809
Georgescu J, Rehm T, Wiehler J, Steipe B, Holak TA (2003) Backbone HN, C, Ca and Cb assignment of the GFPuv mutant. J Biomol NMR 25:161–162. doi:10.1023/A:1022296413190
Goddard TD, Kneller DG Sparky 3. University of California, San Francisco
Huang JR, Craggs TD, Christodoulou J, Jackson SE (2007) Stable intermediate states and high energy barriers in the unfolding of GFP. J Mol Biol 370:356–371. doi:10.1016/j.jmb.2007.04.039
Jackson SE, Craggs TD, Huang JR (2006) Understanding the folding of GFP using biophysical techniques. Expert Rev Proteomics 3:545–559. doi:10.1586/14789450.3.5.545
Jung YS, Zweckstetter M (2004) Mars—robust automatic backbone assignment of proteins. J Biomol NMR 30:11–23. doi:10.1023/B:JNMR.0000042954.99056.ad
Khan F, Stott K, Jackson S (2003) 1H, 15N and 13C backbone assignment of the green fluorescent protein (GFP). J Biomol NMR 26:281–282. doi:10.1023/A:1023817001154
Nagai T, Ibata K, Park ES, Kubota M, Mikoshiba K, Miyawaki A (2002) A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat Biotechnol 20:87–90. doi:10.1038/nbt0102-87
Rekas A, Alattia JR, Nagai T, Miyawaki A, Ikura M (2002) Crystal structure of venus, a yellow fluorescent protein with improved maturation and reduced environmental sensitivity. J Biol Chem 277:50573–50578. doi:10.1074/jbc.M209524200
Schwarzinger S, Kroon GJ, Foss TR, Chung J, Wright PE, Dyson HJ (2001) Sequence-dependent correction of random coil NMR chemical shifts. J Am Chem Soc 123:2970–2978. doi:10.1021/ja003760i
Seifert MH, Georgescu J, Ksiazek D, Smialowski P, Rehm T, Steipe B, Holak TA (2003) Backbone dynamics of green fluorescent protein and the effect of histidine 148 substitution. Biochemistry 42:2500–2512. doi:10.1021/bi026481b
Shaner NC, Patterson GH, Davidson MW (2007) Advances in fluorescent protein technology. J Cell Sci 120:4247–4260. doi:10.1242/jcs.005801
Shimozono S, Miyawaki A (2008) Engineering FRET constructs using CFP and YFP. Methods Cell Biol 85:381–393. doi:10.1016/S0091-679X(08)85016-9
Tsien RY (1998) The green fluorescent protein. Annu Rev Biochem 67:509–544. doi:10.1146/annurev.biochem.67.1.509
Yu J, Xiao J, Ren X, Lao K, Xie XS (2006) Probing gene expression in live cells, one protein molecule at a time. Science 311:1600–1603. doi:10.1126/science.1119623
Zhang H, Neal S, Wishart DS (2003) RefDB: a database of uniformly referenced protein chemical shifts. J Biomol NMR 25:173–195. doi:10.1023/A:1022836027055
Acknowledgments
STDH is a recipient of a Netherlands Ramsay and a Human Frontier Science Program Long-term Fellowship (LT0798/2005). CB is holding a Studienstiftung des Deutschen Volkes scholarship and is supported by the Erasmus/Sokrates program. LDC is a NH&MRC C.J. Martin Fellow. CMD acknowledges funding from the Wellcome and Leverhulme Trusts. We thank Prof. Atsushi Miyawaki for providing the DNA plasmid of Venus, Dr. John Christodoulou for helpful discussion, and the staff of the Biomolecular NMR Facility, Department of Chemistry, University of Cambridge. Financial support by the Access to Research Infrastructures activity in the 6th Framework Program of the EC (Contract # RII3-026145, EU-NMR) for conducting the research at CERM is gratefully acknowledged.
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Hsu, ST.D., Behrens, C., Cabrita, L.D. et al. 1H, 15N and 13C assignments of yellow fluorescent protein (YFP) Venus. Biomol NMR Assign 3, 67–72 (2009). https://doi.org/10.1007/s12104-009-9143-y
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DOI: https://doi.org/10.1007/s12104-009-9143-y